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The map label for this gene is hofB [H]

Identifier: 15601950

GI number: 15601950

Start: 111403

End: 112788

Strand: Direct

Name: hofB [H]

Synonym: PM0085

Alternate gene names: 15601950

Gene position: 111403-112788 (Clockwise)

Preceding gene: 15601949

Following gene: 15601951

Centisome position: 4.93

GC content: 40.91

Gene sequence:

>1386_bases
ATGTTTCATGAGAATCCTTTGTGTACTGTTAGCGCAATGACAGGAGAGGTATTTGAAATCCAACAGGCGCTATGGCAAAA
AAATCAGCAACAACAACGTTTTTTATTACGTTATTTTGCCTTGCCTTTACAAGAAGATGAAAAACAGTTGTGGCTTGGTG
TGGATTCGTTAGCGAATTTATCAGCATGTGATGCCTTTTCTTTTTTAACGAATAAACACATTGAGCCTGTTTTATTATCA
ACAAATGAACTTAAACGGGCATTGCAGCAACTTTCCCCACCAAAATTACAGGTGGAAGAAAACATACCCACGGTTTATCA
AGTCGCGCAATTAGATTCTGATTCCGCGACGGATGAACCTTTGATTCAATTACTTGATCAGGTTTTTGAACGTGCATTAC
AGCTACAGGCTTCTGACATTCATTTTGAACCGCAACAGCATAGCTTACAAGTGCGTTTTAGAATCGATGGTGTATTACAA
GTCCAGCCTTCCTTTTCAGGGATATTGGCTAATCGCCTGATTTCTCGTCTTAAATTATTAGCAAAATTAGATATTAGTGA
AACACGCTTGCCTCAGGACGGTTGTTTCCAATTTAAAACGACATTTTCTGATACATTAGATTTTCGACTTTCTACGTTGC
CGACACATTTAGGCGAAAAAGCGGTATTGCGTTTACAGCGAAATAAGCCTATTCATCTCAGTTTTGGTGAGTTGGGGATG
ACCGCAGACCAACAACACAGATTCCAACACGCGTTAAGTCAGCCACAAGGACTGATTTTAGTAACGGGACCAACAGGGAG
TGGAAAAAGCATTTCGCTTTATAGTGCGCTAGCTTGGCTCAACAGCATAGAAAAGCATATTTTAACAGCAGAAGATCCGA
TTGAAATTGCGTTGACTGGGATAATCCAAACGCAAGTAAATACGCAAATAGGACTGGATTTCAAGCGTTTATTACGCACT
TTTTTACGTCAAGATCCAGACATTATTATGTTAGGGGAAATTCGTGATGAAGAAAGCGCGTTAATCGCATTACGTGCAGC
TCAAACTGGGCATTTAGTCCTCTCTACCTTGCATACGAATGATGCGCCCTCTGCCCTTACTCGCTTACAGCAATTAGGGG
TGCCTTTGCATGAAATTGAACAAAGCCTCTTACTTGTTGTGGCGCAGCGTTTATTGCGTCGTTGTTGTGATTGCCGTGTA
GAGACACAATCGGCGTGTCGTTGCTATCAGGGGTATAAAGGGAGGATTGGGGTATATCAATTTTTACAAAAAGATAAAAC
AGGGTGTTTTGTCACGGATTTTAGTAGTTTACGCGAGAGTGCGAAGGAAAAAGTTCGTTTAGGCATGACCGATGACAATG
AAGTACAACGTGTATTAGGTGAATGA

Upstream 100 bases:

>100_bases
GCTATACGCTGACAGCGAGTGGTAACGCAGCTCAAGGTGTTTCTTGGACAGTTAATTGTGGTGCTCAATCTGACATTTTC
CCAGCAGGATTTTGCGCATA

Downstream 100 bases:

>100_bases
TGAAAAAATTAAAAATGTTTCGTTGGAAAGGAATAAATCGATTACAACAAATACAAAAAGGAGTTATTGTGGCGGAAAGT
AAAGAGATAGCACAGCAATC

Product: HofB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MFHENPLCTVSAMTGEVFEIQQALWQKNQQQQRFLLRYFALPLQEDEKQLWLGVDSLANLSACDAFSFLTNKHIEPVLLS
TNELKRALQQLSPPKLQVEENIPTVYQVAQLDSDSATDEPLIQLLDQVFERALQLQASDIHFEPQQHSLQVRFRIDGVLQ
VQPSFSGILANRLISRLKLLAKLDISETRLPQDGCFQFKTTFSDTLDFRLSTLPTHLGEKAVLRLQRNKPIHLSFGELGM
TADQQHRFQHALSQPQGLILVTGPTGSGKSISLYSALAWLNSIEKHILTAEDPIEIALTGIIQTQVNTQIGLDFKRLLRT
FLRQDPDIIMLGEIRDEESALIALRAAQTGHLVLSTLHTNDAPSALTRLQQLGVPLHEIEQSLLLVVAQRLLRRCCDCRV
ETQSACRCYQGYKGRIGVYQFLQKDKTGCFVTDFSSLRESAKEKVRLGMTDDNEVQRVLGE

Sequences:

>Translated_461_residues
MFHENPLCTVSAMTGEVFEIQQALWQKNQQQQRFLLRYFALPLQEDEKQLWLGVDSLANLSACDAFSFLTNKHIEPVLLS
TNELKRALQQLSPPKLQVEENIPTVYQVAQLDSDSATDEPLIQLLDQVFERALQLQASDIHFEPQQHSLQVRFRIDGVLQ
VQPSFSGILANRLISRLKLLAKLDISETRLPQDGCFQFKTTFSDTLDFRLSTLPTHLGEKAVLRLQRNKPIHLSFGELGM
TADQQHRFQHALSQPQGLILVTGPTGSGKSISLYSALAWLNSIEKHILTAEDPIEIALTGIIQTQVNTQIGLDFKRLLRT
FLRQDPDIIMLGEIRDEESALIALRAAQTGHLVLSTLHTNDAPSALTRLQQLGVPLHEIEQSLLLVVAQRLLRRCCDCRV
ETQSACRCYQGYKGRIGVYQFLQKDKTGCFVTDFSSLRESAKEKVRLGMTDDNEVQRVLGE
>Mature_461_residues
MFHENPLCTVSAMTGEVFEIQQALWQKNQQQQRFLLRYFALPLQEDEKQLWLGVDSLANLSACDAFSFLTNKHIEPVLLS
TNELKRALQQLSPPKLQVEENIPTVYQVAQLDSDSATDEPLIQLLDQVFERALQLQASDIHFEPQQHSLQVRFRIDGVLQ
VQPSFSGILANRLISRLKLLAKLDISETRLPQDGCFQFKTTFSDTLDFRLSTLPTHLGEKAVLRLQRNKPIHLSFGELGM
TADQQHRFQHALSQPQGLILVTGPTGSGKSISLYSALAWLNSIEKHILTAEDPIEIALTGIIQTQVNTQIGLDFKRLLRT
FLRQDPDIIMLGEIRDEESALIALRAAQTGHLVLSTLHTNDAPSALTRLQQLGVPLHEIEQSLLLVVAQRLLRRCCDCRV
ETQSACRCYQGYKGRIGVYQFLQKDKTGCFVTDFSSLRESAKEKVRLGMTDDNEVQRVLGE

Specific function: Unknown

COG id: COG2804

COG function: function code NU; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1786296, Length=462, Percent_Identity=39.1774891774892, Blast_Score=287, Evalue=1e-78,
Organism=Escherichia coli, GI1789723, Length=339, Percent_Identity=45.7227138643068, Blast_Score=283, Evalue=2e-77,
Organism=Escherichia coli, GI87082188, Length=253, Percent_Identity=34.3873517786561, Blast_Score=107, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007831
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E; PF05157 GSPII_E_N [H]

EC number: NA

Molecular weight: Translated: 52079; Mature: 52079

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: PS00662 T2SP_E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFHENPLCTVSAMTGEVFEIQQALWQKNQQQQRFLLRYFALPLQEDEKQLWLGVDSLANL
CCCCCCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHEEEHHHHCCC
SACDAFSFLTNKHIEPVLLSTNELKRALQQLSPPKLQVEENIPTVYQVAQLDSDSATDEP
HHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCEEECCCCCHHHHHHHCCCCCCCCHH
LIQLLDQVFERALQLQASDIHFEPQQHSLQVRFRIDGVLQVQPSFSGILANRLISRLKLL
HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECEEEEECCCHHHHHHHHHHHHHHHH
AKLDISETRLPQDGCFQFKTTFSDTLDFRLSTLPTHLGEKAVLRLQRNKPIHLSFGELGM
HHCCCHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEHHCCCC
TADQQHRFQHALSQPQGLILVTGPTGSGKSISLYSALAWLNSIEKHILTAEDPIEIALTG
CCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHEEEEE
IIQTQVNTQIGLDFKRLLRTFLRQDPDIIMLGEIRDEESALIALRAAQTGHLVLSTLHTN
HHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEECCC
DAPSALTRLQQLGVPLHEIEQSLLLVVAQRLLRRCCDCRVETQSACRCYQGYKGRIGVYQ
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHH
FLQKDKTGCFVTDFSSLRESAKEKVRLGMTDDNEVQRVLGE
HHHCCCCCEEEECHHHHHHHHHHHEECCCCCCHHHHHHHCC
>Mature Secondary Structure
MFHENPLCTVSAMTGEVFEIQQALWQKNQQQQRFLLRYFALPLQEDEKQLWLGVDSLANL
CCCCCCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHEEEHHHHCCC
SACDAFSFLTNKHIEPVLLSTNELKRALQQLSPPKLQVEENIPTVYQVAQLDSDSATDEP
HHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCEEECCCCCHHHHHHHCCCCCCCCHH
LIQLLDQVFERALQLQASDIHFEPQQHSLQVRFRIDGVLQVQPSFSGILANRLISRLKLL
HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECEEEEECCCHHHHHHHHHHHHHHHH
AKLDISETRLPQDGCFQFKTTFSDTLDFRLSTLPTHLGEKAVLRLQRNKPIHLSFGELGM
HHCCCHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEEEHHCCCC
TADQQHRFQHALSQPQGLILVTGPTGSGKSISLYSALAWLNSIEKHILTAEDPIEIALTG
CCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHEEEEE
IIQTQVNTQIGLDFKRLLRTFLRQDPDIIMLGEIRDEESALIALRAAQTGHLVLSTLHTN
HHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEEECCCCCEEEEEECCC
DAPSALTRLQQLGVPLHEIEQSLLLVVAQRLLRRCCDCRVETQSACRCYQGYKGRIGVYQ
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHH
FLQKDKTGCFVTDFSSLRESAKEKVRLGMTDDNEVQRVLGE
HHHCCCCCEEEECHHHHHHHHHHHEECCCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]