| Definition | Bacillus amyloliquefaciens FZB42, complete genome. |
|---|---|
| Accession | NC_009725 |
| Length | 3,918,589 |
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The map label for this gene is leuS
Identifier: 154687153
GI number: 154687153
Start: 2850238
End: 2852652
Strand: Reverse
Name: leuS
Synonym: RBAM_027250
Alternate gene names: 154687153
Gene position: 2852652-2850238 (Counterclockwise)
Preceding gene: 154687154
Following gene: 154687152
Centisome position: 72.8
GC content: 50.52
Gene sequence:
>2415_bases TTGAGTTTTCAGCATGAAAAAATAGAAAAGAAATGGCAGAATTACTGGTTGGATCATAAAACGTTCGCCGTCAGTGAAGA GAATGACAAGCCGAAGTTTTACGCGCTTGACATGTTCCCGTATCCTTCAGGAGCCGGCCTTCATGTCGGACATCCGGAAG GCTATACGGCAACCGATATCCTTTCGCGCATGAGACGCATGCAAGGATACAATGTGCTTCATCCGATGGGATGGGACGCG TTCGGGCTTCCTGCCGAGCAATACGCGCTTGACACGGGGAATGATCCGGCCGAGTTCACAAAACAAAATATAGATAATTT CCGCCGCCAGATTCAATCGCTCGGATTTTCATATGATTGGGATCGTGAAATCAATACGACTGATCCGGACTATTACAAGT GGACGCAGTGGATCTTCACCAAGCTGTACGAAAAAGGGCTCGCTTACGTAGACGAAGTGCCGGTCAACTGGTGCCCGGCG CTCGGAACGGTGCTTGCGAACGAAGAAGTCATTGACGGCAAAAGCGAGCGGGGCGGCCATCCGGTTGAACGCCGCCCGAT GAGACAATGGATGCTGAAAATCACCGCTTATGCGGACAGGCTTCTTGAAGATTTAGAAGACCTTGACTGGCCGGAAAGCA TTAAAGACATGCAGCGCAACTGGATCGGACGCTCAGAAGGCGCAAACGTGCATTTCGCGATCGACGGCACTGATGACACG TTTACCGTGTTTACGACAAGACCGGACACGCTGTTCGGCGCGGCTTATGCCGTACTGGCTCCTGAGCATGAGCTTGTGGA GGCCATCACGACGCCTGAACAAAAAGAAGCGGTAGACGCTTATGTTAAAGAAGTTCAGGCGAAAAGTGACCTGGAACGGA CGGATCTTGCGAAAACAAAAACGGGCGTCTTCACGGGCGCATATGCCGTAAACCCTGCAAACGGGGAAAAGCTGCCGATC TGGATAGCGGATTATGTCCTCGCCTCTTACGGAACAGGCGCTGTAATGGCCGTGCCGGCGCATGATGAACGTGATTTTGA ATTCGCAAAAGTGTTCAGCCTGCCTGTCAAAGAAGTCGTAAAAGGCGGAAACACGGAAGAAGAAGCGTACACGGGGGACG GAGAGCATGTCAATTCCGGCTTTCTGAACGGACTGAAAAAAGCGGAAGCGATTGAAAAAATGATCGCCTGGCTTGAAGAA ACGAAAAACGGTGAGAAAAAAGTGACATACCGTCTGCGTGATTGGCTGTTCAGCCGCCAGCGCTATTGGGGCGAGCCGAT TCCGGTTATTCATTGGGAAGACGGCACGTCAACAGCCGTTCCGGCGGAAGAGCTGCCGCTGATTCTGCCGAAAACCGATG AGATCAAACCGAGCGGAACAGGTGAATCACCGCTTGCCAACATTAAAGAGTGGGTGGAAGTCACTGATCCTGAAACGGGC AAAAAAGGCAGAAGAGAAACGAACACGATGCCGCAATGGGCGGGAAGCTGCTGGTATTTCCTCCGCTTTATCGACCCGAA AAATCCGGATCAGCTCGCTTCACCTGAGAAACTGGATAAATGGCTGCCCGTTGATATTTACATCGGAGGAGCGGAGCATG CCGTGCTTCACCTTCTGTACGCGCGTTTCTGGCATAAATTCCTCTACGATATCGGTGTCGTGCCGACGAAAGAACCGTTC CAAAAGCTGTATAACCAAGGAATGATTCTCGGGGAAAATAATGAAAAAATGAGTAAATCCCGCGGAAACGTCGTCAATCC GGATGAAATTGTGGCGTCTCACGGAGCAGATACGCTCCGCCTGTACGAAATGTTTATGGGGCCGCTTGATGCATCTATCG CCTGGTCTGAATCAGGTCTTGACGGAGCGCGCCGCTTCCTTGACCGCGTATGGCGTTTGTTTATCGAGGAAAACGGCGAG CTGACGGGCAAAGTGACAGAAGGCGCAGGCGAAACTCTTGAGCGCGTCTATCATGAAACGGTCATGAAAGTGACAGAAAA CTTCGAAGCCCTTCGTTTTAACACGGGCATTTCTCAGCTGATGGTCTTCATTAATGAAGCTTACAAAGCGAATGAACTGC CGAGAGAATATATCGAAGGTTTTGTGAAGCTGCTTTCTCCTATTGCGCCGCATTTGGCGGAAGAACTGTGGGAAAAACTC GGCCACGAAGGTTCGATTGCATACGAGGCTTGGCCTGCTTATGACGAATCAAAACTGGTGGACGATGAAGTGGAAATCGT CGTCCAGCTGAACGGAAAAGTAAAAGCGAAATTAATGGTTCCGGCTGATGCTGATAAAGCAGCGTTAGAACAGCTCGCAC AAGCTGACGAAAAAGTAAAAGAGCAGCTTGAAGGAAAAACGATCCGAAAAATCATTGCCGTACCGGGCAAGCTTGTCAAT ATCGTGGCAAACTGA
Upstream 100 bases:
>100_bases GGGAGTTTTTTTAGTTTTAGAATAATCTGAATATAATCTTTCTCATCCCGTCAATACTTGGACTACATACGCCGTATTCA ATCAGAAGGAGGTTTTTACG
Downstream 100 bases:
>100_bases CCGGGCGAAGCCCCTCTCCTACAGAGAGGGGCTTTTTTATCAGGCCTCTATCATAGAAATTGCACCGCGGGCTTTGGTAT ACTTAACACCATAAAGATGA
Product: leucyl-tRNA synthetase
Products: NA
Alternate protein names: Leucine--tRNA ligase; LeuRS
Number of amino acids: Translated: 804; Mature: 803
Protein sequence:
>804_residues MSFQHEKIEKKWQNYWLDHKTFAVSEENDKPKFYALDMFPYPSGAGLHVGHPEGYTATDILSRMRRMQGYNVLHPMGWDA FGLPAEQYALDTGNDPAEFTKQNIDNFRRQIQSLGFSYDWDREINTTDPDYYKWTQWIFTKLYEKGLAYVDEVPVNWCPA LGTVLANEEVIDGKSERGGHPVERRPMRQWMLKITAYADRLLEDLEDLDWPESIKDMQRNWIGRSEGANVHFAIDGTDDT FTVFTTRPDTLFGAAYAVLAPEHELVEAITTPEQKEAVDAYVKEVQAKSDLERTDLAKTKTGVFTGAYAVNPANGEKLPI WIADYVLASYGTGAVMAVPAHDERDFEFAKVFSLPVKEVVKGGNTEEEAYTGDGEHVNSGFLNGLKKAEAIEKMIAWLEE TKNGEKKVTYRLRDWLFSRQRYWGEPIPVIHWEDGTSTAVPAEELPLILPKTDEIKPSGTGESPLANIKEWVEVTDPETG KKGRRETNTMPQWAGSCWYFLRFIDPKNPDQLASPEKLDKWLPVDIYIGGAEHAVLHLLYARFWHKFLYDIGVVPTKEPF QKLYNQGMILGENNEKMSKSRGNVVNPDEIVASHGADTLRLYEMFMGPLDASIAWSESGLDGARRFLDRVWRLFIEENGE LTGKVTEGAGETLERVYHETVMKVTENFEALRFNTGISQLMVFINEAYKANELPREYIEGFVKLLSPIAPHLAEELWEKL GHEGSIAYEAWPAYDESKLVDDEVEIVVQLNGKVKAKLMVPADADKAALEQLAQADEKVKEQLEGKTIRKIIAVPGKLVN IVAN
Sequences:
>Translated_804_residues MSFQHEKIEKKWQNYWLDHKTFAVSEENDKPKFYALDMFPYPSGAGLHVGHPEGYTATDILSRMRRMQGYNVLHPMGWDA FGLPAEQYALDTGNDPAEFTKQNIDNFRRQIQSLGFSYDWDREINTTDPDYYKWTQWIFTKLYEKGLAYVDEVPVNWCPA LGTVLANEEVIDGKSERGGHPVERRPMRQWMLKITAYADRLLEDLEDLDWPESIKDMQRNWIGRSEGANVHFAIDGTDDT FTVFTTRPDTLFGAAYAVLAPEHELVEAITTPEQKEAVDAYVKEVQAKSDLERTDLAKTKTGVFTGAYAVNPANGEKLPI WIADYVLASYGTGAVMAVPAHDERDFEFAKVFSLPVKEVVKGGNTEEEAYTGDGEHVNSGFLNGLKKAEAIEKMIAWLEE TKNGEKKVTYRLRDWLFSRQRYWGEPIPVIHWEDGTSTAVPAEELPLILPKTDEIKPSGTGESPLANIKEWVEVTDPETG KKGRRETNTMPQWAGSCWYFLRFIDPKNPDQLASPEKLDKWLPVDIYIGGAEHAVLHLLYARFWHKFLYDIGVVPTKEPF QKLYNQGMILGENNEKMSKSRGNVVNPDEIVASHGADTLRLYEMFMGPLDASIAWSESGLDGARRFLDRVWRLFIEENGE LTGKVTEGAGETLERVYHETVMKVTENFEALRFNTGISQLMVFINEAYKANELPREYIEGFVKLLSPIAPHLAEELWEKL GHEGSIAYEAWPAYDESKLVDDEVEIVVQLNGKVKAKLMVPADADKAALEQLAQADEKVKEQLEGKTIRKIIAVPGKLVN IVAN >Mature_803_residues SFQHEKIEKKWQNYWLDHKTFAVSEENDKPKFYALDMFPYPSGAGLHVGHPEGYTATDILSRMRRMQGYNVLHPMGWDAF GLPAEQYALDTGNDPAEFTKQNIDNFRRQIQSLGFSYDWDREINTTDPDYYKWTQWIFTKLYEKGLAYVDEVPVNWCPAL GTVLANEEVIDGKSERGGHPVERRPMRQWMLKITAYADRLLEDLEDLDWPESIKDMQRNWIGRSEGANVHFAIDGTDDTF TVFTTRPDTLFGAAYAVLAPEHELVEAITTPEQKEAVDAYVKEVQAKSDLERTDLAKTKTGVFTGAYAVNPANGEKLPIW IADYVLASYGTGAVMAVPAHDERDFEFAKVFSLPVKEVVKGGNTEEEAYTGDGEHVNSGFLNGLKKAEAIEKMIAWLEET KNGEKKVTYRLRDWLFSRQRYWGEPIPVIHWEDGTSTAVPAEELPLILPKTDEIKPSGTGESPLANIKEWVEVTDPETGK KGRRETNTMPQWAGSCWYFLRFIDPKNPDQLASPEKLDKWLPVDIYIGGAEHAVLHLLYARFWHKFLYDIGVVPTKEPFQ KLYNQGMILGENNEKMSKSRGNVVNPDEIVASHGADTLRLYEMFMGPLDASIAWSESGLDGARRFLDRVWRLFIEENGEL TGKVTEGAGETLERVYHETVMKVTENFEALRFNTGISQLMVFINEAYKANELPREYIEGFVKLLSPIAPHLAEELWEKLG HEGSIAYEAWPAYDESKLVDDEVEIVVQLNGKVKAKLMVPADADKAALEQLAQADEKVKEQLEGKTIRKIIAVPGKLVNI VAN
Specific function: Unknown
COG id: COG0495
COG function: function code J; Leucyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI7661872, Length=877, Percent_Identity=33.751425313569, Blast_Score=474, Evalue=1e-133, Organism=Homo sapiens, GI94721239, Length=181, Percent_Identity=28.1767955801105, Blast_Score=74, Evalue=8e-13, Organism=Homo sapiens, GI94721241, Length=181, Percent_Identity=28.1767955801105, Blast_Score=74, Evalue=8e-13, Organism=Escherichia coli, GI1786861, Length=863, Percent_Identity=42.5260718424102, Blast_Score=676, Evalue=0.0, Organism=Escherichia coli, GI1790708, Length=391, Percent_Identity=24.2966751918159, Blast_Score=88, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71997510, Length=808, Percent_Identity=29.3316831683168, Blast_Score=317, Evalue=2e-86, Organism=Caenorhabditis elegans, GI71997517, Length=808, Percent_Identity=29.2079207920792, Blast_Score=317, Evalue=2e-86, Organism=Caenorhabditis elegans, GI212645227, Length=376, Percent_Identity=27.9255319148936, Blast_Score=139, Evalue=4e-33, Organism=Caenorhabditis elegans, GI17554638, Length=279, Percent_Identity=26.8817204301075, Blast_Score=75, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6323414, Length=853, Percent_Identity=36.9284876905041, Blast_Score=477, Evalue=1e-135, Organism=Saccharomyces cerevisiae, GI6321531, Length=433, Percent_Identity=23.3256351039261, Blast_Score=87, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6319395, Length=186, Percent_Identity=29.5698924731183, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21355409, Length=776, Percent_Identity=32.4742268041237, Blast_Score=371, Evalue=1e-102, Organism=Drosophila melanogaster, GI281366294, Length=829, Percent_Identity=22.7985524728589, Blast_Score=107, Evalue=4e-23,
Paralogues:
None
Copy number: 800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYL_BACA2 (A7Z7V7)
Other databases:
- EMBL: CP000560 - RefSeq: YP_001422314.1 - ProteinModelPortal: A7Z7V7 - SMR: A7Z7V7 - STRING: A7Z7V7 - EnsemblBacteria: EBBACT00000004370 - GeneID: 5462049 - GenomeReviews: CP000560_GR - KEGG: bay:RBAM_027250 - eggNOG: COG0495 - GeneTree: EBGT00070000031891 - HOGENOM: HBG693845 - OMA: ERGNFPV - ProtClustDB: PRK00390 - BioCyc: BAMY326423:RBAM_027250-MONOMER - GO: GO:0005737 - HAMAP: MF_00049_B - InterPro: IPR001412 - InterPro: IPR002300 - InterPro: IPR002302 - InterPro: IPR014729 - InterPro: IPR009080 - InterPro: IPR013155 - InterPro: IPR009008 - Gene3D: G3DSA:3.40.50.620 - PANTHER: PTHR11946:SF7 - PRINTS: PR00985 - TIGRFAMs: TIGR00396
Pfam domain/function: PF08264 Anticodon_1; PF00133 tRNA-synt_1; SSF47323 tRNAsyn_1a_bind; SSF50677 ValRS_IleRS_edit
EC number: =6.1.1.4
Molecular weight: Translated: 91271; Mature: 91140
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: BINDING 579-579
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFQHEKIEKKWQNYWLDHKTFAVSEENDKPKFYALDMFPYPSGAGLHVGHPEGYTATDI CCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCCCCEECCCCCCCCHHHH LSRMRRMQGYNVLHPMGWDAFGLPAEQYALDTGNDPAEFTKQNIDNFRRQIQSLGFSYDW HHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC DREINTTDPDYYKWTQWIFTKLYEKGLAYVDEVPVNWCPALGTVLANEEVIDGKSERGGH CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHCCCCCCCCCC PVERRPMRQWMLKITAYADRLLEDLEDLDWPESIKDMQRNWIGRSEGANVHFAIDGTDDT CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCE FTVFTTRPDTLFGAAYAVLAPEHELVEAITTPEQKEAVDAYVKEVQAKSDLERTDLAKTK EEEEECCCCHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH TGVFTGAYAVNPANGEKLPIWIADYVLASYGTGAVMAVPAHDERDFEFAKVFSLPVKEVV CCEEECEEEECCCCCCEEEEEHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHCCHHHHH KGGNTEEEAYTGDGEHVNSGFLNGLKKAEAIEKMIAWLEETKNGEKKVTYRLRDWLFSRQ CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH RYWGEPIPVIHWEDGTSTAVPAEELPLILPKTDEIKPSGTGESPLANIKEWVEVTDPETG HHCCCCCCEEEECCCCCCCCCHHHCCEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC KKGRRETNTMPQWAGSCWYFLRFIDPKNPDQLASPEKLDKWLPVDIYIGGAEHAVLHLLY CCCCCCCCCCCHHHCCCEEEEEECCCCCCHHCCCHHHHHCCCCEEEEECCHHHHHHHHHH ARFWHKFLYDIGVVPTKEPFQKLYNQGMILGENNEKMSKSRGNVVNPDEIVASHGADTLR HHHHHHHHHHCCCCCCHHHHHHHHHCCEEECCCCHHHHHCCCCCCCHHHHHHHCCCHHHH LYEMFMGPLDASIAWSESGLDGARRFLDRVWRLFIEENGELTGKVTEGAGETLERVYHET HHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH VMKVTENFEALRFNTGISQLMVFINEAYKANELPREYIEGFVKLLSPIAPHLAEELWEKL HHHHHHCCHHEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC GHEGSIAYEAWPAYDESKLVDDEVEIVVQLNGKVKAKLMVPADADKAALEQLAQADEKVK CCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHH EQLEGKTIRKIIAVPGKLVNIVAN HHHCCHHHHHHHHCCCHHHHEECC >Mature Secondary Structure SFQHEKIEKKWQNYWLDHKTFAVSEENDKPKFYALDMFPYPSGAGLHVGHPEGYTATDI CCCHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCCCCEECCCCCCCCHHHH LSRMRRMQGYNVLHPMGWDAFGLPAEQYALDTGNDPAEFTKQNIDNFRRQIQSLGFSYDW HHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC DREINTTDPDYYKWTQWIFTKLYEKGLAYVDEVPVNWCPALGTVLANEEVIDGKSERGGH CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHCCCCCCCCCC PVERRPMRQWMLKITAYADRLLEDLEDLDWPESIKDMQRNWIGRSEGANVHFAIDGTDDT CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCE FTVFTTRPDTLFGAAYAVLAPEHELVEAITTPEQKEAVDAYVKEVQAKSDLERTDLAKTK EEEEECCCCHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH TGVFTGAYAVNPANGEKLPIWIADYVLASYGTGAVMAVPAHDERDFEFAKVFSLPVKEVV CCEEECEEEECCCCCCEEEEEHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHCCHHHHH KGGNTEEEAYTGDGEHVNSGFLNGLKKAEAIEKMIAWLEETKNGEKKVTYRLRDWLFSRQ CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH RYWGEPIPVIHWEDGTSTAVPAEELPLILPKTDEIKPSGTGESPLANIKEWVEVTDPETG HHCCCCCCEEEECCCCCCCCCHHHCCEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC KKGRRETNTMPQWAGSCWYFLRFIDPKNPDQLASPEKLDKWLPVDIYIGGAEHAVLHLLY CCCCCCCCCCCHHHCCCEEEEEECCCCCCHHCCCHHHHHCCCCEEEEECCHHHHHHHHHH ARFWHKFLYDIGVVPTKEPFQKLYNQGMILGENNEKMSKSRGNVVNPDEIVASHGADTLR HHHHHHHHHHCCCCCCHHHHHHHHHCCEEECCCCHHHHHCCCCCCCHHHHHHHCCCHHHH LYEMFMGPLDASIAWSESGLDGARRFLDRVWRLFIEENGELTGKVTEGAGETLERVYHET HHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHH VMKVTENFEALRFNTGISQLMVFINEAYKANELPREYIEGFVKLLSPIAPHLAEELWEKL HHHHHHCCHHEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC GHEGSIAYEAWPAYDESKLVDDEVEIVVQLNGKVKAKLMVPADADKAALEQLAQADEKVK CCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCHHHHHHHHHHHHHHH EQLEGKTIRKIIAVPGKLVNIVAN HHHCCHHHHHHHHCCCHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA