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The map label for this gene is ysmA [H]

Identifier: 154686977

GI number: 154686977

Start: 2668489

End: 2668926

Strand: Reverse

Name: ysmA [H]

Synonym: RBAM_025490

Alternate gene names: 154686977

Gene position: 2668926-2668489 (Counterclockwise)

Preceding gene: 154686978

Following gene: 154686976

Centisome position: 68.11

GC content: 47.95

Gene sequence:

>438_bases
ATGAAACAACCGCAATATATTGATATCCCGTTTGAAGAATGGAGACAGTCGTTTTCTTTCTTTACTGAAGTATCGGTTCG
TTTTTCAGAAACGGATATGTTCGGCCATATGAATAATGTAACCCCTTTCATCTATTTTGAGGAAGCGCGGATCGCTTATT
TCAAACAGCGAGGCATAACGGCGCAAAACTCGGAAACGATGACGGTCGTCGCAAGCCAGCAGTGCGACTATATGCGTCAG
GTGATGCCGTATGAAAATCTGCGGATTTATGTGAAAGCAAGCGCTGCCGGAAATGCGTCCGTCACCCTTCATTACCTTGG
AGAAAATGAGTCGGGCCTGCCGTGCTTTACGGGTTCTGTCGTTATGGTTCAAGTGTCGAAGAAAAGCGGCAAAGCGGTCA
GCTGGACGGAGCGGGAGAAAGGCATTCTGCTCGCCTGA

Upstream 100 bases:

>100_bases
TACAAGCATTCCGTAATTTCTTCGGAAGCGACAGAGTATAAGAAAGAGAAAAAGAGCCTCTTCCGCACGGGAGAGGTTTT
TTTATAAGGAGCTGAAGGTG

Downstream 100 bases:

>100_bases
ACGGATAACTATTTCTCTAAGAGACGTCACCTCCGAAGCGCCCTTTACATATGATATCTTGACTATATAAACCCATTCGT
TTCAGATTCGCTCTCACCTT

Product: YsmA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MKQPQYIDIPFEEWRQSFSFFTEVSVRFSETDMFGHMNNVTPFIYFEEARIAYFKQRGITAQNSETMTVVASQQCDYMRQ
VMPYENLRIYVKASAAGNASVTLHYLGENESGLPCFTGSVVMVQVSKKSGKAVSWTEREKGILLA

Sequences:

>Translated_145_residues
MKQPQYIDIPFEEWRQSFSFFTEVSVRFSETDMFGHMNNVTPFIYFEEARIAYFKQRGITAQNSETMTVVASQQCDYMRQ
VMPYENLRIYVKASAAGNASVTLHYLGENESGLPCFTGSVVMVQVSKKSGKAVSWTEREKGILLA
>Mature_145_residues
MKQPQYIDIPFEEWRQSFSFFTEVSVRFSETDMFGHMNNVTPFIYFEEARIAYFKQRGITAQNSETMTVVASQQCDYMRQ
VMPYENLRIYVKASAAGNASVTLHYLGENESGLPCFTGSVVMVQVSKKSGKAVSWTEREKGILLA

Specific function: Unknown

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006683 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 16581; Mature: 16581

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00430 TONB_DEPENDENT_REC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQPQYIDIPFEEWRQSFSFFTEVSVRFSETDMFGHMNNVTPFIYFEEARIAYFKQRGIT
CCCCCEEECCHHHHHHHHHEEEEEEEEEECCCCCCCCCCCCEEEEEECCEEEEEHHCCCC
AQNSETMTVVASQQCDYMRQVMPYENLRIYVKASAAGNASVTLHYLGENESGLPCFTGSV
CCCCCEEEEEECCHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCEEECCE
VMVQVSKKSGKAVSWTEREKGILLA
EEEEEECCCCCEEEECCCCCCEEEC
>Mature Secondary Structure
MKQPQYIDIPFEEWRQSFSFFTEVSVRFSETDMFGHMNNVTPFIYFEEARIAYFKQRGIT
CCCCCEEECCHHHHHHHHHEEEEEEEEEECCCCCCCCCCCCEEEEEECCEEEEEHHCCCC
AQNSETMTVVASQQCDYMRQVMPYENLRIYVKASAAGNASVTLHYLGENESGLPCFTGSV
CCCCCEEEEEECCHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCEEECCE
VMVQVSKKSGKAVSWTEREKGILLA
EEEEEECCCCCEEEECCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3114423; 8969504; 9384377 [H]