Click here to switch to the map view.

The map label for this gene is yqjH

Identifier: 154686649

GI number: 154686649

Start: 2355746

End: 2356990

Strand: Reverse

Name: yqjH

Synonym: RBAM_022180

Alternate gene names: 154686649

Gene position: 2356990-2355746 (Counterclockwise)

Preceding gene: 154686652

Following gene: 154686648

Centisome position: 60.15

GC content: 47.79

Gene sequence:

>1245_bases
GTGGCCGGAAAAGGGAGAATTATATTTCATATCGATATGAACAGTTTTTATGCCTCCGTAGAAATGGCGTATGATCCGTC
TTTAAGAGGAAAACCTATCGCCGTTGCCGGAAACGTGAAGGAACGGAAAGGAATCATCGTCACCTGCAGCTATGAAGCGA
GAGCGCGGGGCGTAAAGACCACCATGCCGGTGTGGCGGGCAAAACGTCTCTGTCCGGAACTCATCGTCGTGCCTCCGAAT
TTTGACCGCTATCGGAGTTCGTCAAAAGAAATGTTCAGCATTCTGAGGGAGTATACGGATTTAGTCGAGCCTGTTTCTAT
TGATGAAGGATACATGGATATTACGGACACACCGCACAGCCACAGGGCGTATGAGACAGCCGAAGACATTCAGGCGAGAC
TGCAAAAAGAGCTTTTGCTTCCGTCAAGCATCGGCATCGCCCCGAATAAATTTCTCGCTAAAATGGCTTCTGACATGAAA
AAACCGCTCGGCATCACCATTTTAAGAAAAAGAGAGCTGCCGGACGTATTATGGCCTCTTCCGATTGAAGAGATGCACGG
TATAGGAACGAAAACTGCGGAAAAAATAAAAACGCTCGGCATCAAAACGATCGGTGATTTGGCAAAAGGAGATGAACATG
CGCTGAAAACGCTTCTCGGCATAAACGGCCCGAGGCTGAAGGATAAAGCGAACGGCATCCATCCTGCAGAAGTCAATCCC
GAGCGGATATATGAATTTAAAAGCGTCGGCAACTCATCCACCCTGTCGCATGATTCGGCTGACTGGGATGAATTAACGGG
CGTGTTTGACCGGCTCGCGCTGTCTGTGAGCGAACGGCTCCAGCGTAAGGAGGTCATGGCCTGCCGGCTGTTCATCATGA
TTCGGTATGCGGATTGGAAAACGGTCACAAGAAGCATGACCCTCAGCAATCCGGCTGATCAGAAAAAAGACATCATGGAA
GCGGCGATGGAACTGTTTGACAAGCACTGGAACCAAAATCCGGTAAGGCTTCTCGGCATCACCGGAACGGAACTGGTTGA
AAAACAGCAGGCATATAAACAGCTTGATCTGTTTTCATTCAAGGAGGACGCAAAGGATGAGCCGATTTTTCAGATGATGA
ACGAGCTGAATGAAAAATACGGCCAAAACTTGATCAGAAAAGGCGCCGTTATAAAAAAAGAAGAAAGCAAAACAAGGGGA
ACGAGCTTTAACAGAGACTTTTTTCAGGATGAAAAGAAAAGGTGA

Upstream 100 bases:

>100_bases
AGTCATTCATTGACTCAAGAATCATTTTATCACATCCATTCAGCTCTTATTTTACTACATATATATAAGGTTGTCTATGA
AAGGAAAGGAGGCGCCGGGA

Downstream 100 bases:

>100_bases
ATAACTTGAAAAAAGGGGTTATGTATGATAATTTCTTTAGTATAAATATCATTTTATTTTAATTTAAATTTTAAAATGGT
TAAACGTTTGAAGAAGGGAC

Product: DNA polymerase IV

Products: NA

Alternate protein names: Pol IV

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MAGKGRIIFHIDMNSFYASVEMAYDPSLRGKPIAVAGNVKERKGIIVTCSYEARARGVKTTMPVWRAKRLCPELIVVPPN
FDRYRSSSKEMFSILREYTDLVEPVSIDEGYMDITDTPHSHRAYETAEDIQARLQKELLLPSSIGIAPNKFLAKMASDMK
KPLGITILRKRELPDVLWPLPIEEMHGIGTKTAEKIKTLGIKTIGDLAKGDEHALKTLLGINGPRLKDKANGIHPAEVNP
ERIYEFKSVGNSSTLSHDSADWDELTGVFDRLALSVSERLQRKEVMACRLFIMIRYADWKTVTRSMTLSNPADQKKDIME
AAMELFDKHWNQNPVRLLGITGTELVEKQQAYKQLDLFSFKEDAKDEPIFQMMNELNEKYGQNLIRKGAVIKKEESKTRG
TSFNRDFFQDEKKR

Sequences:

>Translated_414_residues
MAGKGRIIFHIDMNSFYASVEMAYDPSLRGKPIAVAGNVKERKGIIVTCSYEARARGVKTTMPVWRAKRLCPELIVVPPN
FDRYRSSSKEMFSILREYTDLVEPVSIDEGYMDITDTPHSHRAYETAEDIQARLQKELLLPSSIGIAPNKFLAKMASDMK
KPLGITILRKRELPDVLWPLPIEEMHGIGTKTAEKIKTLGIKTIGDLAKGDEHALKTLLGINGPRLKDKANGIHPAEVNP
ERIYEFKSVGNSSTLSHDSADWDELTGVFDRLALSVSERLQRKEVMACRLFIMIRYADWKTVTRSMTLSNPADQKKDIME
AAMELFDKHWNQNPVRLLGITGTELVEKQQAYKQLDLFSFKEDAKDEPIFQMMNELNEKYGQNLIRKGAVIKKEESKTRG
TSFNRDFFQDEKKR
>Mature_413_residues
AGKGRIIFHIDMNSFYASVEMAYDPSLRGKPIAVAGNVKERKGIIVTCSYEARARGVKTTMPVWRAKRLCPELIVVPPNF
DRYRSSSKEMFSILREYTDLVEPVSIDEGYMDITDTPHSHRAYETAEDIQARLQKELLLPSSIGIAPNKFLAKMASDMKK
PLGITILRKRELPDVLWPLPIEEMHGIGTKTAEKIKTLGIKTIGDLAKGDEHALKTLLGINGPRLKDKANGIHPAEVNPE
RIYEFKSVGNSSTLSHDSADWDELTGVFDRLALSVSERLQRKEVMACRLFIMIRYADWKTVTRSMTLSNPADQKKDIMEA
AMELFDKHWNQNPVRLLGITGTELVEKQQAYKQLDLFSFKEDAKDEPIFQMMNELNEKYGQNLIRKGAVIKKEESKTRGT
SFNRDFFQDEKKR

Specific function: Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by polIV. Exhibits

COG id: COG0389

COG function: function code L; Nucleotidyltransferase/DNA polymerase involved in DNA repair

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 umuC domain

Homologues:

Organism=Homo sapiens, GI154350220, Length=257, Percent_Identity=31.1284046692607, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI84043967, Length=414, Percent_Identity=26.8115942028986, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI7706681, Length=415, Percent_Identity=26.7469879518072, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI7705344, Length=108, Percent_Identity=50, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI5729982, Length=157, Percent_Identity=33.7579617834395, Blast_Score=89, Evalue=1e-17,
Organism=Escherichia coli, GI1786425, Length=343, Percent_Identity=36.734693877551, Blast_Score=224, Evalue=8e-60,
Organism=Escherichia coli, GI1787432, Length=401, Percent_Identity=26.4339152119701, Blast_Score=110, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI193205700, Length=414, Percent_Identity=25.8454106280193, Blast_Score=129, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI17537959, Length=355, Percent_Identity=25.3521126760563, Blast_Score=106, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI193205702, Length=357, Percent_Identity=24.3697478991597, Blast_Score=95, Evalue=7e-20,
Organism=Caenorhabditis elegans, GI115534089, Length=281, Percent_Identity=27.4021352313167, Blast_Score=87, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6324921, Length=209, Percent_Identity=29.6650717703349, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI19923006, Length=441, Percent_Identity=26.3038548752834, Blast_Score=120, Evalue=1e-27,
Organism=Drosophila melanogaster, GI21355641, Length=280, Percent_Identity=30.7142857142857, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24644984, Length=280, Percent_Identity=30.7142857142857, Blast_Score=115, Evalue=5e-26,
Organism=Drosophila melanogaster, GI24668444, Length=147, Percent_Identity=34.6938775510204, Blast_Score=91, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DPO4_BACA2 (A7Z6F3)

Other databases:

- EMBL:   CP000560
- RefSeq:   YP_001421810.1
- ProteinModelPortal:   A7Z6F3
- SMR:   A7Z6F3
- STRING:   A7Z6F3
- EnsemblBacteria:   EBBACT00000004569
- GeneID:   5463018
- GenomeReviews:   CP000560_GR
- KEGG:   bay:RBAM_022180
- eggNOG:   COG0389
- GeneTree:   EBGT00050000001510
- HOGENOM:   HBG734504
- OMA:   GDEHIIR
- ProtClustDB:   PRK01810
- BioCyc:   BAMY326423:RBAM_022180-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01113
- InterPro:   IPR017962
- InterPro:   IPR017961
- InterPro:   IPR001126
- InterPro:   IPR017963
- InterPro:   IPR022880
- Gene3D:   G3DSA:3.30.1490.100
- PANTHER:   PTHR11076

Pfam domain/function: PF00817 IMS; SSF100879 DNA_pol_Y-fam_little_finger

EC number: =2.7.7.7

Molecular weight: Translated: 47145; Mature: 47014

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: PS50173 UMUC

Important sites: ACT_SITE 109-109

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGKGRIIFHIDMNSFYASVEMAYDPSLRGKPIAVAGNVKERKGIIVTCSYEARARGVKT
CCCCCCEEEEEECCCCEEEEEEEECCCCCCCCEEEECCCHHCCCEEEEECCHHHHCCCCH
TMPVWRAKRLCPELIVVPPNFDRYRSSSKEMFSILREYTDLVEPVSIDEGYMDITDTPHS
HHHHHHHHHCCCCEEEECCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCC
HRAYETAEDIQARLQKELLLPSSIGIAPNKFLAKMASDMKKPLGITILRKRELPDVLWPL
CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
PIEEMHGIGTKTAEKIKTLGIKTIGDLAKGDEHALKTLLGINGPRLKDKANGIHPAEVNP
CHHHHHCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCCCCCCHHCCCCCCCCCCH
ERIYEFKSVGNSSTLSHDSADWDELTGVFDRLALSVSERLQRKEVMACRLFIMIRYADWK
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHH
TVTRSMTLSNPADQKKDIMEAAMELFDKHWNQNPVRLLGITGTELVEKQQAYKQLDLFSF
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHH
KEDAKDEPIFQMMNELNEKYGQNLIRKGAVIKKEESKTRGTSFNRDFFQDEKKR
HCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure 
AGKGRIIFHIDMNSFYASVEMAYDPSLRGKPIAVAGNVKERKGIIVTCSYEARARGVKT
CCCCCEEEEEECCCCEEEEEEEECCCCCCCCEEEECCCHHCCCEEEEECCHHHHCCCCH
TMPVWRAKRLCPELIVVPPNFDRYRSSSKEMFSILREYTDLVEPVSIDEGYMDITDTPHS
HHHHHHHHHCCCCEEEECCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCC
HRAYETAEDIQARLQKELLLPSSIGIAPNKFLAKMASDMKKPLGITILRKRELPDVLWPL
CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCC
PIEEMHGIGTKTAEKIKTLGIKTIGDLAKGDEHALKTLLGINGPRLKDKANGIHPAEVNP
CHHHHHCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHHCCCCCCCCHHCCCCCCCCCCH
ERIYEFKSVGNSSTLSHDSADWDELTGVFDRLALSVSERLQRKEVMACRLFIMIRYADWK
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCHH
TVTRSMTLSNPADQKKDIMEAAMELFDKHWNQNPVRLLGITGTELVEKQQAYKQLDLFSF
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHH
KEDAKDEPIFQMMNELNEKYGQNLIRKGAVIKKEESKTRGTSFNRDFFQDEKKR
HCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA