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The map label for this gene is yvbU [H]

Identifier: 154686641

GI number: 154686641

Start: 2347874

End: 2348752

Strand: Reverse

Name: yvbU [H]

Synonym: RBAM_022100

Alternate gene names: 154686641

Gene position: 2348752-2347874 (Counterclockwise)

Preceding gene: 154686645

Following gene: 154686639

Centisome position: 59.94

GC content: 46.08

Gene sequence:

>879_bases
TTGGATTTAAAGAAGCATTTAGCCTTTATTAAAACGGTTGAAAGCGGCAGCCTGACCCAAGCCGCTGCCATATTGAATTA
CACACAGCCGAACATCAGCCAAATGATCAGTAAATTAGAGGAAGAGTACGGTTTTCCGCTTTTGATCAGACAGCGGCATG
GAGTGAGGCCCACCGCAAATGGCTTGAAAGTGTTACATATTATGAAGGAAATTCAAAAAAACTATGAAAAACTGTCTGAA
ACCGTTGATAATATTAATGGGTTAGAAAGAGGGGAAGTCCGGCTCGGCACTGTTACGAGCGTGGCGGTAAAATGGCTGCC
GAAAATTTTGAGGGAATTTAATGAGCTGTATCCTTCCATTAAGGTGCATTTGTTTGAAGGAAATTCTACTGAACTGGAAG
AATGGCTGAAAGATGATCGGATTGATGCGGCGATTGGGACATCCCACAGCGAGAAGTGGCATTTTTACCCGTTGGCAGAG
GATCCGATTGTAGCGGTGATGAGCCCGCAGCATGAATTGGCGCAATGTGAAACGGTTCCGTTACATGTCATGGAGTCGGT
CAAATGTATCGTGCCTTATCCGGAGACACATTTTGATGTGCTGAAAGTGCTGAAGGAAGAAAAGATTACGCCGCGGGTCG
CTTATCAAATCAGAGGGGATGAAGCGATTATTGCAATGGTGCGGAACAATCTGGGGATCAGCATCTTGCCGCAGCTTTTG
GTGAATGATTGTGATGTGCTCATCAAACGGTTCGACCGGTATGTCTCCAGGCAGCTCGGCATTTTGACAGCTCATGCAAA
GGAGACGCAGACACCTTCTGTCCAGAAACTGATTCAATGCATACAAGAATGGGTTGCGGTCCATCAGGCTTCTGTCTGA

Upstream 100 bases:

>100_bases
GATGGAGACATTGCCATTTTATTTTCGATTGATGTATAAGTAAACTAAATATAACTAATGCATTGGATAATAAAGAATGA
TATCTGGGAGATGAAGCCGG

Downstream 100 bases:

>100_bases
AGAAGCCTGATGTGCGTTTAAGCCGGTTCAGGATAATAGACCAGCATAAAATATGTCACCGGTTCATCCGTGGAATTAAA
ATAACTGTGCGGCATCGCCC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MDLKKHLAFIKTVESGSLTQAAAILNYTQPNISQMISKLEEEYGFPLLIRQRHGVRPTANGLKVLHIMKEIQKNYEKLSE
TVDNINGLERGEVRLGTVTSVAVKWLPKILREFNELYPSIKVHLFEGNSTELEEWLKDDRIDAAIGTSHSEKWHFYPLAE
DPIVAVMSPQHELAQCETVPLHVMESVKCIVPYPETHFDVLKVLKEEKITPRVAYQIRGDEAIIAMVRNNLGISILPQLL
VNDCDVLIKRFDRYVSRQLGILTAHAKETQTPSVQKLIQCIQEWVAVHQASV

Sequences:

>Translated_292_residues
MDLKKHLAFIKTVESGSLTQAAAILNYTQPNISQMISKLEEEYGFPLLIRQRHGVRPTANGLKVLHIMKEIQKNYEKLSE
TVDNINGLERGEVRLGTVTSVAVKWLPKILREFNELYPSIKVHLFEGNSTELEEWLKDDRIDAAIGTSHSEKWHFYPLAE
DPIVAVMSPQHELAQCETVPLHVMESVKCIVPYPETHFDVLKVLKEEKITPRVAYQIRGDEAIIAMVRNNLGISILPQLL
VNDCDVLIKRFDRYVSRQLGILTAHAKETQTPSVQKLIQCIQEWVAVHQASV
>Mature_292_residues
MDLKKHLAFIKTVESGSLTQAAAILNYTQPNISQMISKLEEEYGFPLLIRQRHGVRPTANGLKVLHIMKEIQKNYEKLSE
TVDNINGLERGEVRLGTVTSVAVKWLPKILREFNELYPSIKVHLFEGNSTELEEWLKDDRIDAAIGTSHSEKWHFYPLAE
DPIVAVMSPQHELAQCETVPLHVMESVKCIVPYPETHFDVLKVLKEEKITPRVAYQIRGDEAIIAMVRNNLGISILPQLL
VNDCDVLIKRFDRYVSRQLGILTAHAKETQTPSVQKLIQCIQEWVAVHQASV

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=242, Percent_Identity=28.099173553719, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI157672245, Length=250, Percent_Identity=25.2, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1789204, Length=257, Percent_Identity=25.6809338521401, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1788297, Length=247, Percent_Identity=26.3157894736842, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787879, Length=241, Percent_Identity=27.3858921161826, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789506, Length=180, Percent_Identity=26.6666666666667, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1790262, Length=261, Percent_Identity=23.3716475095785, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787601, Length=244, Percent_Identity=23.3606557377049, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082132, Length=291, Percent_Identity=23.7113402061856, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787530, Length=244, Percent_Identity=21.7213114754098, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788887, Length=294, Percent_Identity=23.8095238095238, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI2367136, Length=292, Percent_Identity=25.3424657534247, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787806, Length=146, Percent_Identity=30.8219178082192, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788481, Length=262, Percent_Identity=25.1908396946565, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1790399, Length=246, Percent_Identity=22.7642276422764, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1790208, Length=297, Percent_Identity=22.8956228956229, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33236; Mature: 33236

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLKKHLAFIKTVESGSLTQAAAILNYTQPNISQMISKLEEEYGFPLLIRQRHGVRPTAN
CCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCC
GLKVLHIMKEIQKNYEKLSETVDNINGLERGEVRLGTVTSVAVKWLPKILREFNELYPSI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCE
KVHLFEGNSTELEEWLKDDRIDAAIGTSHSEKWHFYPLAEDPIVAVMSPQHELAQCETVP
EEEEECCCCHHHHHHHHHCCCCHHHCCCCCCCEEEEECCCCCEEEEECCCHHHHHHCCCH
LHVMESVKCIVPYPETHFDVLKVLKEEKITPRVAYQIRGDEAIIAMVRNNLGISILPQLL
HHHHCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCEEEEHHHCCCCHHHHHHHH
VNDCDVLIKRFDRYVSRQLGILTAHAKETQTPSVQKLIQCIQEWVAVHQASV
HHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLKKHLAFIKTVESGSLTQAAAILNYTQPNISQMISKLEEEYGFPLLIRQRHGVRPTAN
CCHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCC
GLKVLHIMKEIQKNYEKLSETVDNINGLERGEVRLGTVTSVAVKWLPKILREFNELYPSI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCE
KVHLFEGNSTELEEWLKDDRIDAAIGTSHSEKWHFYPLAEDPIVAVMSPQHELAQCETVP
EEEEECCCCHHHHHHHHHCCCCHHHCCCCCCCEEEEECCCCCEEEEECCCHHHHHHCCCH
LHVMESVKCIVPYPETHFDVLKVLKEEKITPRVAYQIRGDEAIIAMVRNNLGISILPQLL
HHHHCCCEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCEEEEHHHCCCCHHHHHHHH
VNDCDVLIKRFDRYVSRQLGILTAHAKETQTPSVQKLIQCIQEWVAVHQASV
HHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]