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The map label for this gene is scpB

Identifier: 154686566

GI number: 154686566

Start: 2229795

End: 2230388

Strand: Reverse

Name: scpB

Synonym: RBAM_021350

Alternate gene names: 154686566

Gene position: 2230388-2229795 (Counterclockwise)

Preceding gene: 154686567

Following gene: 154686565

Centisome position: 56.92

GC content: 49.66

Gene sequence:

>594_bases
ATGGCGCTTGATATCGTGAATTGGAAAGCGATTGTGGAAGCCCTGCTGTATGCGGCGGGTGATGAAGGGCTGACCAAAAA
GCAATTGGTGACGGTGCTTGAAATAGAAGAAGCGGAACTGGCCGGAATCATGGAAGAAGTGGCCGCTCAGTACAAGGAAG
ACGACAGAGGCATCGAGCTTACCGAATATGCGGATACGTATATGCTTGGAACGAAAAAAGAATTCGTGCCTTATTTGAAA
AAACTAATCGAAGTGCCGTCAAAAGGGCTGTCACAGGCTTCTTTGGAAGTGCTGGCGATCGTTTCGTACAAGCAGCCGAT
CACACGGGCGGAAATTGAAGATATCCGGGGTGTGAAGTCTGAGCGGATTCTGCACAGCCTCGTGTCAAAAGCGCTGCTGT
GTGAGGTGGGCCGCGCCGACGGTCCCGGCCGGGCGATTTTATACGGCACGACACCGGTATTTCTTGAACAATTCGGCTTA
AAAACATTGGAGGAGCTCCCGCCGCTTCCTGAAAATGCGGAGGAAGACGTTCTCCAGGAGGAAGCCGATTTATTCTTTGA
AAACTTCAACCAAACTTTTGAGGATATTAAATAA

Upstream 100 bases:

>100_bases
ACGTTTTTAGCAGTCCTGGAACTGATGAAAAATCAGCAGATTATCATTGAACAGGAAGAAAACTTTTCAGATATATACAT
TACGGGGAGTGAATCCATTC

Downstream 100 bases:

>100_bases
TAATCGTTTTTCATCATACGATAGTAGGGAAAGGCCATTGATGAATGACGCAAATGACGACGTACAAGAGAGGAAGGAAA
CGGACGGAAATGGGAAATTC

Product: ScpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MALDIVNWKAIVEALLYAAGDEGLTKKQLVTVLEIEEAELAGIMEEVAAQYKEDDRGIELTEYADTYMLGTKKEFVPYLK
KLIEVPSKGLSQASLEVLAIVSYKQPITRAEIEDIRGVKSERILHSLVSKALLCEVGRADGPGRAILYGTTPVFLEQFGL
KTLEELPPLPENAEEDVLQEEADLFFENFNQTFEDIK

Sequences:

>Translated_197_residues
MALDIVNWKAIVEALLYAAGDEGLTKKQLVTVLEIEEAELAGIMEEVAAQYKEDDRGIELTEYADTYMLGTKKEFVPYLK
KLIEVPSKGLSQASLEVLAIVSYKQPITRAEIEDIRGVKSERILHSLVSKALLCEVGRADGPGRAILYGTTPVFLEQFGL
KTLEELPPLPENAEEDVLQEEADLFFENFNQTFEDIK
>Mature_196_residues
ALDIVNWKAIVEALLYAAGDEGLTKKQLVTVLEIEEAELAGIMEEVAAQYKEDDRGIELTEYADTYMLGTKKEFVPYLKK
LIEVPSKGLSQASLEVLAIVSYKQPITRAEIEDIRGVKSERILHSLVSKALLCEVGRADGPGRAILYGTTPVFLEQFGLK
TLEELPPLPENAEEDVLQEEADLFFENFNQTFEDIK

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SCPB_BACA2 (A7Z670)

Other databases:

- EMBL:   CP000560
- RefSeq:   YP_001421727.1
- ProteinModelPortal:   A7Z670
- SMR:   A7Z670
- STRING:   A7Z670
- EnsemblBacteria:   EBBACT00000006365
- GeneID:   5462553
- GenomeReviews:   CP000560_GR
- KEGG:   bay:RBAM_021350
- eggNOG:   COG1386
- GeneTree:   EBGT00050000002500
- HOGENOM:   HBG752450
- OMA:   NILEEMQ
- ProtClustDB:   CLSK887513
- BioCyc:   BAMY326423:RBAM_021350-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01804
- InterPro:   IPR005234
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PIRSF:   PIRSF019345
- TIGRFAMs:   TIGR00281

Pfam domain/function: PF04079 DUF387

EC number: NA

Molecular weight: Translated: 22024; Mature: 21893

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALDIVNWKAIVEALLYAAGDEGLTKKQLVTVLEIEEAELAGIMEEVAAQYKEDDRGIEL
CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
TEYADTYMLGTKKEFVPYLKKLIEVPSKGLSQASLEVLAIVSYKQPITRAEIEDIRGVKS
HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHH
ERILHSLVSKALLCEVGRADGPGRAILYGTTPVFLEQFGLKTLEELPPLPENAEEDVLQE
HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
EADLFFENFNQTFEDIK
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ALDIVNWKAIVEALLYAAGDEGLTKKQLVTVLEIEEAELAGIMEEVAAQYKEDDRGIEL
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
TEYADTYMLGTKKEFVPYLKKLIEVPSKGLSQASLEVLAIVSYKQPITRAEIEDIRGVKS
HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCHH
ERILHSLVSKALLCEVGRADGPGRAILYGTTPVFLEQFGLKTLEELPPLPENAEEDVLQE
HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
EADLFFENFNQTFEDIK
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA