Click here to switch to the map view.

The map label for this gene is ypdC [H]

Identifier: 154686540

GI number: 154686540

Start: 2205534

End: 2206190

Strand: Reverse

Name: ypdC [H]

Synonym: RBAM_021090

Alternate gene names: 154686540

Gene position: 2206190-2205534 (Counterclockwise)

Preceding gene: 154686541

Following gene: 154686539

Centisome position: 56.3

GC content: 44.6

Gene sequence:

>657_bases
ATGTTTGCAATCATCTCTGCAGGAATTGCTCCCGGCATTGCGCTGTTAAGCTATTTTTATTTAAAAGATCAGTATGACAA
TGAACCCGTACATATGGTGCTGAGGTCTTTTTTTCTCGGGGTTGTCCTTGTGTTTCCGACCATGTTTATCCAATATGTTC
TTGAAAAAGAGCATGTGGGGGGAGGAAGCTTTTTCGTTTCGTTTTTGTCTTCGGGATTTCTGGAAGAATCGGTGAAATGG
TTCGTTCTGATGATCAGTGTGTATCCGCATGCTCATTTTGATGAGCATTATGACGGAATCGTTTACGGGGCCAGTGTGTC
TTTAGGATTTGCCACGCTTGAAAATATTCTGTATTTATTCGGCCACGGCGTTGAGCATGCTTTCATCAGGGCGCTTCTGC
CGGTCTCCTGCCATGCGCTGATCGGAGTAATTATGGGATTTTATCTCGGAAAAGCCCGCTTTTCGCAGAAAAAAGCCCGT
GTCAAATGGTTTGTGATTTCGCTGGCCGTGCCTTCATGTCTGCACGGTTCTTACGATTTTATTCTTACCGCCCTCAATCA
TTGGGTATATTATATGCTGCCGTTTATGCTGTTTTTATGGTGGTTCGGGCTGCGAAAGGCAAAAAAAGCACGCTCCGTCA
ATATGATCCAAGTGTGA

Upstream 100 bases:

>100_bases
ATGATCATTCATATGCTCTTTTTTAAAAAAATTGAAAGATGTAAAAATATGAACAACATGGTACGATAGATATAGGAATA
TAAAGGAAAGAGGTTGCCTG

Downstream 100 bases:

>100_bases
AGAAACCGCGCGTCGCGTGCGGTTTCTTTTTTATGCCTTGACAGGGGATAAGAAGGAAACGTGCATAAAAATAACCTCGT
GACAGACAATACGGGTACAC

Product: YpdC

Products: NA

Alternate protein names: Protease responsible for activating sigma-W [H]

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MFAIISAGIAPGIALLSYFYLKDQYDNEPVHMVLRSFFLGVVLVFPTMFIQYVLEKEHVGGGSFFVSFLSSGFLEESVKW
FVLMISVYPHAHFDEHYDGIVYGASVSLGFATLENILYLFGHGVEHAFIRALLPVSCHALIGVIMGFYLGKARFSQKKAR
VKWFVISLAVPSCLHGSYDFILTALNHWVYYMLPFMLFLWWFGLRKAKKARSVNMIQV

Sequences:

>Translated_218_residues
MFAIISAGIAPGIALLSYFYLKDQYDNEPVHMVLRSFFLGVVLVFPTMFIQYVLEKEHVGGGSFFVSFLSSGFLEESVKW
FVLMISVYPHAHFDEHYDGIVYGASVSLGFATLENILYLFGHGVEHAFIRALLPVSCHALIGVIMGFYLGKARFSQKKAR
VKWFVISLAVPSCLHGSYDFILTALNHWVYYMLPFMLFLWWFGLRKAKKARSVNMIQV
>Mature_218_residues
MFAIISAGIAPGIALLSYFYLKDQYDNEPVHMVLRSFFLGVVLVFPTMFIQYVLEKEHVGGGSFFVSFLSSGFLEESVKW
FVLMISVYPHAHFDEHYDGIVYGASVSLGFATLENILYLFGHGVEHAFIRALLPVSCHALIGVIMGFYLGKARFSQKKAR
VKWFVISLAVPSCLHGSYDFILTALNHWVYYMLPFMLFLWWFGLRKAKKARSVNMIQV

Specific function: Is responsible for Site-1 cleavage of the RsiW anti- sigma factor. This results, after two other proteolytic steps catalyzed by the RasP and ClpXP proteases, in the release of SigW and the transcription activation of the genes under the control of the sig

COG id: COG2339

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the protease prsW family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24847; Mature: 24847

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFAIISAGIAPGIALLSYFYLKDQYDNEPVHMVLRSFFLGVVLVFPTMFIQYVLEKEHVG
CCEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GGSFFVSFLSSGFLEESVKWFVLMISVYPHAHFDEHYDGIVYGASVSLGFATLENILYLF
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHH
GHGVEHAFIRALLPVSCHALIGVIMGFYLGKARFSQKKARVKWFVISLAVPSCLHGSYDF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
ILTALNHWVYYMLPFMLFLWWFGLRKAKKARSVNMIQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MFAIISAGIAPGIALLSYFYLKDQYDNEPVHMVLRSFFLGVVLVFPTMFIQYVLEKEHVG
CCEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GGSFFVSFLSSGFLEESVKWFVLMISVYPHAHFDEHYDGIVYGASVSLGFATLENILYLF
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHH
GHGVEHAFIRALLPVSCHALIGVIMGFYLGKARFSQKKARVKWFVISLAVPSCLHGSYDF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
ILTALNHWVYYMLPFMLFLWWFGLRKAKKARSVNMIQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 8830707 [H]