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The map label for this gene is yprB [H]

Identifier: 154686468

GI number: 154686468

Start: 2138566

End: 2139804

Strand: Reverse

Name: yprB [H]

Synonym: RBAM_020360

Alternate gene names: 154686468

Gene position: 2139804-2138566 (Counterclockwise)

Preceding gene: 154686469

Following gene: 154686467

Centisome position: 54.61

GC content: 46.81

Gene sequence:

>1239_bases
ATGTCCTTGAAAAATAAATTAAAGCGGATGAAAAACCACCTGAATGTGCCGGAAGCTGAAAAAAAGCCGGCAGCTTCACA
ACTTTCGGTCCCGGATATTCAAGTCCCATTTAGAGAAGAATGGGAGGCATTCGGAGTGAAGCCTTTCTTTTTTGAGGATG
AATACTGTCTTATCCGCGAAACCGTCTATCCGCTTTCGCACCGCCACGGACGGTACAGCTTCAGTGAGCTTGATGACGTC
ATGGCATTATGGAATAAAGGCGGTTTGACACATACTTTATCAGCAGAAGGATACGAAAAAAGCCAGCTGTTCTTCTTTGA
TACTGAAACGACCGGCCTCGGCGGCGGGGCCGGCAATATGATCTTTTTGCTCGGTCATGCAAGAGTGTATGAAGACCGTG
TCGCGGTTAAACAGCATCTGCTTCCTAAACCGGGAAACGAGACGGCTCTTTACAAAAGCTTTTTAAGTGAGGTTGACATT
ACGTCTCTTGTTACGTATAACGGAAAAGCCTTTGACTGGCCGCAGGTAAAAACTAGGCATACATTGCTCCGGGACAGGCT
TCCGAAACTTCCTGACTTCGGTCACTTTGATCTTCTGCACGGGGCGAGACGGCTTTGGAAACATAAATTAGAGCGTGTAT
CGCTTTCGGCGGTTGAAAATGAAGAGCTTGCTTTTAAAAGGGACGAAGACACCCCTGGTTATTTGGCGCCGATGCTGTAT
TTTCAATTTTTAAAGGCGGAGGATCCGGCTCTTTTAAAGGGAGTGCTCTCGCATAATGAACAAGATGTGCTTTCCCTCAT
CGCTCTTTACATCCATATGTCAAAAAAGATTTTTGCATCTTCTGATCAGACGTCAGAACGTCAGGAAGCATACGCCATGG
CGAAATGGTTTATCGCTCATAAAGAAACCGATCGGGCTGTTTCACAGCTGGAAGCGCTGCAAGGCAAAGCCTTTGAAGAT
TCAGATCGGGCCCTTTTTGACTTAGCAATGCTTTATAAAAAACAAAACCGCAGGCAAGACGCCGTGCCCCTTTGGGAGAA
ACTGACGGGCTCTGATCTTCACATATGCAGACACCAATCAGCGGTAGAGCTGGCGATCTATTTTGAGCATCACGCAAAAG
ATTACAAAAAAGCTCTGCAGGCCGCGCAGCAGGCGGCAGAAGACGGGGAAATTTCGGAAAAAGAAGCTGAGAAGCTCCAT
GTGAGAATTGCCCGGCTTAAGAGGAAATATTCCTCTTGA

Upstream 100 bases:

>100_bases
GGATGTCCTTCCTGCATCGGCTCCGAAATAGAAGGAATAGATGCAAAGAAAGCGATACTCCGGCTCTTGAATTACGTGTA
AAAGAAAAGGGGGACGAAAG

Downstream 100 bases:

>100_bases
AATATTGCCCGGGAAAGCGCAAAAGCCGAGCTGTTTCGCCAAAAATATTTTTTTCTGAATCCGCATCGATTTTGTTGTAG
AATGGTGCCGCATCTTGTAA

Product: YprB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MSLKNKLKRMKNHLNVPEAEKKPAASQLSVPDIQVPFREEWEAFGVKPFFFEDEYCLIRETVYPLSHRHGRYSFSELDDV
MALWNKGGLTHTLSAEGYEKSQLFFFDTETTGLGGGAGNMIFLLGHARVYEDRVAVKQHLLPKPGNETALYKSFLSEVDI
TSLVTYNGKAFDWPQVKTRHTLLRDRLPKLPDFGHFDLLHGARRLWKHKLERVSLSAVENEELAFKRDEDTPGYLAPMLY
FQFLKAEDPALLKGVLSHNEQDVLSLIALYIHMSKKIFASSDQTSERQEAYAMAKWFIAHKETDRAVSQLEALQGKAFED
SDRALFDLAMLYKKQNRRQDAVPLWEKLTGSDLHICRHQSAVELAIYFEHHAKDYKKALQAAQQAAEDGEISEKEAEKLH
VRIARLKRKYSS

Sequences:

>Translated_412_residues
MSLKNKLKRMKNHLNVPEAEKKPAASQLSVPDIQVPFREEWEAFGVKPFFFEDEYCLIRETVYPLSHRHGRYSFSELDDV
MALWNKGGLTHTLSAEGYEKSQLFFFDTETTGLGGGAGNMIFLLGHARVYEDRVAVKQHLLPKPGNETALYKSFLSEVDI
TSLVTYNGKAFDWPQVKTRHTLLRDRLPKLPDFGHFDLLHGARRLWKHKLERVSLSAVENEELAFKRDEDTPGYLAPMLY
FQFLKAEDPALLKGVLSHNEQDVLSLIALYIHMSKKIFASSDQTSERQEAYAMAKWFIAHKETDRAVSQLEALQGKAFED
SDRALFDLAMLYKKQNRRQDAVPLWEKLTGSDLHICRHQSAVELAIYFEHHAKDYKKALQAAQQAAEDGEISEKEAEKLH
VRIARLKRKYSS
>Mature_411_residues
SLKNKLKRMKNHLNVPEAEKKPAASQLSVPDIQVPFREEWEAFGVKPFFFEDEYCLIRETVYPLSHRHGRYSFSELDDVM
ALWNKGGLTHTLSAEGYEKSQLFFFDTETTGLGGGAGNMIFLLGHARVYEDRVAVKQHLLPKPGNETALYKSFLSEVDIT
SLVTYNGKAFDWPQVKTRHTLLRDRLPKLPDFGHFDLLHGARRLWKHKLERVSLSAVENEELAFKRDEDTPGYLAPMLYF
QFLKAEDPALLKGVLSHNEQDVLSLIALYIHMSKKIFASSDQTSERQEAYAMAKWFIAHKETDRAVSQLEALQGKAFEDS
DRALFDLAMLYKKQNRRQDAVPLWEKLTGSDLHICRHQSAVELAIYFEHHAKDYKKALQAAQQAAEDGEISEKEAEKLHV
RIARLKRKYSS

Specific function: Unknown

COG id: COG3359

COG function: function code L; Predicted exonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012337
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47373; Mature: 47242

Theoretical pI: Translated: 7.59; Mature: 7.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKNKLKRMKNHLNVPEAEKKPAASQLSVPDIQVPFREEWEAFGVKPFFFEDEYCLIRE
CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHH
TVYPLSHRHGRYSFSELDDVMALWNKGGLTHTLSAEGYEKSQLFFFDTETTGLGGGAGNM
HHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCE
IFLLGHARVYEDRVAVKQHLLPKPGNETALYKSFLSEVDITSLVTYNGKAFDWPQVKTRH
EEEEECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHEEEECCCCCCCCCHHHHH
TLLRDRLPKLPDFGHFDLLHGARRLWKHKLERVSLSAVENEELAFKRDEDTPGYLAPMLY
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHH
FQFLKAEDPALLKGVLSHNEQDVLSLIALYIHMSKKIFASSDQTSERQEAYAMAKWFIAH
HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
KETDRAVSQLEALQGKAFEDSDRALFDLAMLYKKQNRRQDAVPLWEKLTGSDLHICRHQS
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHCCC
AVELAIYFEHHAKDYKKALQAAQQAAEDGEISEKEAEKLHVRIARLKRKYSS
CEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLKNKLKRMKNHLNVPEAEKKPAASQLSVPDIQVPFREEWEAFGVKPFFFEDEYCLIRE
CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHH
TVYPLSHRHGRYSFSELDDVMALWNKGGLTHTLSAEGYEKSQLFFFDTETTGLGGGAGNM
HHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCCCCCCCCE
IFLLGHARVYEDRVAVKQHLLPKPGNETALYKSFLSEVDITSLVTYNGKAFDWPQVKTRH
EEEEECHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHEEEECCCCCCCCCHHHHH
TLLRDRLPKLPDFGHFDLLHGARRLWKHKLERVSLSAVENEELAFKRDEDTPGYLAPMLY
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHH
FQFLKAEDPALLKGVLSHNEQDVLSLIALYIHMSKKIFASSDQTSERQEAYAMAKWFIAH
HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
KETDRAVSQLEALQGKAFEDSDRALFDLAMLYKKQNRRQDAVPLWEKLTGSDLHICRHQS
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHCCC
AVELAIYFEHHAKDYKKALQAAQQAAEDGEISEKEAEKLHVRIARLKRKYSS
CEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 3145906 [H]