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The map label for this gene is ypsA

Identifier: 154686466

GI number: 154686466

Start: 2137380

End: 2137928

Strand: Reverse

Name: ypsA

Synonym: RBAM_020340

Alternate gene names: NA

Gene position: 2137928-2137380 (Counterclockwise)

Preceding gene: 154686467

Following gene: 154686465

Centisome position: 54.56

GC content: 45.36

Gene sequence:

>549_bases
TTGAAAGTATTAGCCGTAACAGGATACAAGCCGTTTGAACTCGGAATTTTTAAACAGGATGACCAGGCCCTTGTTTATAT
AAAAAAGGCGATAGAAACCAGACTCAGAAGCTTTATTGACGAAGGCTTGGAATGGATTCTCATATCCGGACAGCTGGGGA
CTGAGCTTTGGGCGGCAGAAACGGCGTACGATCTCAGAGAAGAGTATCCGGAATTAAAGGTTGCCGTTATCACGCCTTTC
TACGGCCAGGAGGAAAAGTGGAAGGAACCGAATAAAGAAATGTATGAAGCGGTGCTTGCTCAGGCAGATTATGAGGAGAG
CCTGACGCATCGGCCGTACGAAAGTCCGCTCCAATTCCGGCAGAAAAACGCGTTCTTTATTGAAAAGTCAGATGCGCTTT
TGCTTTTATATGATCCTGAAATGGAAGGATCGCCGAAATATATGCTGCAGCAGGCAGAAAAACGCCGTGAAACAGACGGA
TATCCAATTTATTCGATCACGATGGATGATCTCCGTGCCGCCGTTGAAGAAGAAGATTTCTTTACATAA

Upstream 100 bases:

>100_bases
TGCGATCATTAGTATTGAACGCTTAAGCAAGATCGGTTAGGATATCAGCAAATCAAAATGGGGCCCGATGGGGAGCCCCA
TTTTTTAAGCAGGTGATCAA

Downstream 100 bases:

>100_bases
CACGTCAGAGAATATTTGACAACGGGACGTGTTTCTGAATAAAATATAACATGATGATTCACGATATGAGGTGAAAAAGA
TGCTTGCTGATAAAGTAAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MKVLAVTGYKPFELGIFKQDDQALVYIKKAIETRLRSFIDEGLEWILISGQLGTELWAAETAYDLREEYPELKVAVITPF
YGQEEKWKEPNKEMYEAVLAQADYEESLTHRPYESPLQFRQKNAFFIEKSDALLLLYDPEMEGSPKYMLQQAEKRRETDG
YPIYSITMDDLRAAVEEEDFFT

Sequences:

>Translated_182_residues
MKVLAVTGYKPFELGIFKQDDQALVYIKKAIETRLRSFIDEGLEWILISGQLGTELWAAETAYDLREEYPELKVAVITPF
YGQEEKWKEPNKEMYEAVLAQADYEESLTHRPYESPLQFRQKNAFFIEKSDALLLLYDPEMEGSPKYMLQQAEKRRETDG
YPIYSITMDDLRAAVEEEDFFT
>Mature_182_residues
MKVLAVTGYKPFELGIFKQDDQALVYIKKAIETRLRSFIDEGLEWILISGQLGTELWAAETAYDLREEYPELKVAVITPF
YGQEEKWKEPNKEMYEAVLAQADYEESLTHRPYESPLQFRQKNAFFIEKSDALLLLYDPEMEGSPKYMLQQAEKRRETDG
YPIYSITMDDLRAAVEEEDFFT

Specific function: Unknown

COG id: COG4474

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0398 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2034_BACA2 (A7Z5X0)

Other databases:

- EMBL:   CP000560
- RefSeq:   YP_001421627.1
- ProteinModelPortal:   A7Z5X0
- SMR:   A7Z5X0
- STRING:   A7Z5X0
- EnsemblBacteria:   EBBACT00000007699
- GeneID:   5459551
- GenomeReviews:   CP000560_GR
- KEGG:   bay:RBAM_020340
- eggNOG:   COG4474
- GeneTree:   EBGT00050000001030
- HOGENOM:   HBG338123
- OMA:   LWVTGYR
- ProtClustDB:   PRK13660
- BioCyc:   BAMY326423:RBAM_020340-MONOMER
- HAMAP:   MF_01575
- InterPro:   IPR010697
- PIRSF:   PIRSF021290

Pfam domain/function: PF06908 DUF1273

EC number: NA

Molecular weight: Translated: 21335; Mature: 21335

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLAVTGYKPFELGIFKQDDQALVYIKKAIETRLRSFIDEGLEWILISGQLGTELWAAE
CEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
TAYDLREEYPELKVAVITPFYGQEEKWKEPNKEMYEAVLAQADYEESLTHRPYESPLQFR
HHHHHHHCCCCEEEEEEECCCCCCHHHCCCCHHHHHHHHHHCCHHHHHCCCCCCCHHHHH
QKNAFFIEKSDALLLLYDPEMEGSPKYMLQQAEKRRETDGYPIYSITMDDLRAAVEEEDF
HCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHCCC
FT
CC
>Mature Secondary Structure
MKVLAVTGYKPFELGIFKQDDQALVYIKKAIETRLRSFIDEGLEWILISGQLGTELWAAE
CEEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
TAYDLREEYPELKVAVITPFYGQEEKWKEPNKEMYEAVLAQADYEESLTHRPYESPLQFR
HHHHHHHCCCCEEEEEEECCCCCCHHHCCCCHHHHHHHHHHCCHHHHHCCCCCCCHHHHH
QKNAFFIEKSDALLLLYDPEMEGSPKYMLQQAEKRRETDGYPIYSITMDDLRAAVEEEDF
HCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHCCC
FT
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA