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The map label for this gene is yodT [H]

Identifier: 154686389

GI number: 154686389

Start: 2070087

End: 2071418

Strand: Reverse

Name: yodT [H]

Synonym: RBAM_019570

Alternate gene names: 154686389

Gene position: 2071418-2070087 (Counterclockwise)

Preceding gene: 154686390

Following gene: 154686388

Centisome position: 52.86

GC content: 51.5

Gene sequence:

>1332_bases
ATGGGGAGCTATTTAATCAAACCGGAGCTTGACGGGAATTATCCGTCAGTCAGTCATGGAAAGGGATCATATGTGTATGA
TCAGGAGGGGAACAAGTATCTTGACGGAGCATCGGGGGCGGTCACTTGCAATATCGGCCACGGCACGGAGGATATTATAC
AAGCTTTAAAAGAGCAGCTTGACTCCGTTTCGTTTGTGTATCGCTCGCAATTCACCAGTACTCCGGCAGAAGAACTGGCT
TTATTTCTGGCCGATCATCTGCCGGGCGGGCTGAATTGGTCATTTTTTGTAAACAGCGGCTCAGAGGCAGTCGAAACAGC
GATGAAAATAGCCGTTCAATATTGGCAGGAAAAAGGGCAATACCAAAAATCCGTCTTCCTATCAAGATGGGGCAGTTACC
ACGGCATTACTTTGGGAGCGCTTTCATTATCGGGGTTTTACGAACGGAGATACCGCTTCACCCAGTTGCTCGAACGGTTT
CCGGCCGTTTCAGCTCCTAATATGTATCGTTCAGAGCTGCAGGGAGAGGAATTTGTGAAAGCTGCGGCGGCTGAACTGGA
AACGGCTGTTCAACGGATCGGTTCCTCATTTATCGCGGGATTTGTCGCAGAACCGATTGTCGGAGCAGCCGGGGCGGCCA
TCACTCCGCCGGCAGGTTATTATGAAGCGCTTGAGGATGTCTGCCGCCGGCACGGTATTTTGTTTATCGCGGATGAAGTC
ATGACGGGGCTCGGGAGAACAGGGCGGATGCTTGCTTCTGAGCATTGGGGGATCGCACCTGATATCGCGGTGCTCGGAAA
AGGGTTAGGCGCCGGTTACGCTCCGATTGCGGCAGCCGTTGCGTCTGATGACATCATTGAAACGATCAAGCGGGGCTCCG
GGGTCATTATGAGCGGACATACGTACAGTGCCAACCCATACTGTGCAAGAGCGGCGCTTGAAGTGCTTCGCTATGTTAAG
AAACACGAGCTGCTCCGGCAGTCAGAGGAGAAAGGCGTAATGCTGAAGCGGAAATTAGAAGAAATCAAAGAGCGCAGCGG
GGTGATTGGGGATGTCCGCGGTAAAGGCCTCCTGATCGGGGTTGAATTCGTTAAGGATAAAACGACGAAGGACGTTTTTT
CGAAAAAACAGGCCTTCACCGAAAAAATCATTAAAGCGGCAAAAAAACGGGGCCTGCTTATTTACCCTGCAAAGCCCGGC
ATTGACAGCGGAGAAGGAGACGCCGTCATCATCGCCCCGCCGTTCACGATCTCATATGCCGAGCTGGATGAGCTGTCAGA
TCTATTTTCCCAGGCCGCAGAAGAAGTTGAAAAAATGATGAAGAAGGATTGA

Upstream 100 bases:

>100_bases
TACAGAAAAGTATTTTCTGCAAAAAACTTTCTGAAGGATAAGAATGCGGTTATTCATCTGTTCATACAATGAAGCAAATG
GGTTTTAGAGGTGGAAAGAT

Downstream 100 bases:

>100_bases
GCTGATATGTCTATTTTTCATAAAAAAATCGATATTCATGAAGCAATTGCCGATGTCAAGGACGAATCTGTCATCATGTT
CGGCGGTTTTGGGGGAGTGG

Product: hypothetical protein

Products: L-Glutamate; L-Glutamate 5-semialdehyde [C]

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MGSYLIKPELDGNYPSVSHGKGSYVYDQEGNKYLDGASGAVTCNIGHGTEDIIQALKEQLDSVSFVYRSQFTSTPAEELA
LFLADHLPGGLNWSFFVNSGSEAVETAMKIAVQYWQEKGQYQKSVFLSRWGSYHGITLGALSLSGFYERRYRFTQLLERF
PAVSAPNMYRSELQGEEFVKAAAAELETAVQRIGSSFIAGFVAEPIVGAAGAAITPPAGYYEALEDVCRRHGILFIADEV
MTGLGRTGRMLASEHWGIAPDIAVLGKGLGAGYAPIAAAVASDDIIETIKRGSGVIMSGHTYSANPYCARAALEVLRYVK
KHELLRQSEEKGVMLKRKLEEIKERSGVIGDVRGKGLLIGVEFVKDKTTKDVFSKKQAFTEKIIKAAKKRGLLIYPAKPG
IDSGEGDAVIIAPPFTISYAELDELSDLFSQAAEEVEKMMKKD

Sequences:

>Translated_443_residues
MGSYLIKPELDGNYPSVSHGKGSYVYDQEGNKYLDGASGAVTCNIGHGTEDIIQALKEQLDSVSFVYRSQFTSTPAEELA
LFLADHLPGGLNWSFFVNSGSEAVETAMKIAVQYWQEKGQYQKSVFLSRWGSYHGITLGALSLSGFYERRYRFTQLLERF
PAVSAPNMYRSELQGEEFVKAAAAELETAVQRIGSSFIAGFVAEPIVGAAGAAITPPAGYYEALEDVCRRHGILFIADEV
MTGLGRTGRMLASEHWGIAPDIAVLGKGLGAGYAPIAAAVASDDIIETIKRGSGVIMSGHTYSANPYCARAALEVLRYVK
KHELLRQSEEKGVMLKRKLEEIKERSGVIGDVRGKGLLIGVEFVKDKTTKDVFSKKQAFTEKIIKAAKKRGLLIYPAKPG
IDSGEGDAVIIAPPFTISYAELDELSDLFSQAAEEVEKMMKKD
>Mature_442_residues
GSYLIKPELDGNYPSVSHGKGSYVYDQEGNKYLDGASGAVTCNIGHGTEDIIQALKEQLDSVSFVYRSQFTSTPAEELAL
FLADHLPGGLNWSFFVNSGSEAVETAMKIAVQYWQEKGQYQKSVFLSRWGSYHGITLGALSLSGFYERRYRFTQLLERFP
AVSAPNMYRSELQGEEFVKAAAAELETAVQRIGSSFIAGFVAEPIVGAAGAAITPPAGYYEALEDVCRRHGILFIADEVM
TGLGRTGRMLASEHWGIAPDIAVLGKGLGAGYAPIAAAVASDDIIETIKRGSGVIMSGHTYSANPYCARAALEVLRYVKK
HELLRQSEEKGVMLKRKLEEIKERSGVIGDVRGKGLLIGVEFVKDKTTKDVFSKKQAFTEKIIKAAKKRGLLIYPAKPGI
DSGEGDAVIIAPPFTISYAELDELSDLFSQAAEEVEKMMKKD

Specific function: Unknown

COG id: COG0161

COG function: function code H; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI4557809, Length=421, Percent_Identity=32.0665083135392, Blast_Score=178, Evalue=9e-45,
Organism=Homo sapiens, GI13994255, Length=469, Percent_Identity=29.2110874200426, Blast_Score=160, Evalue=3e-39,
Organism=Homo sapiens, GI284507298, Length=338, Percent_Identity=32.5443786982249, Blast_Score=147, Evalue=2e-35,
Organism=Homo sapiens, GI37574042, Length=429, Percent_Identity=28.2051282051282, Blast_Score=142, Evalue=8e-34,
Organism=Homo sapiens, GI226442705, Length=429, Percent_Identity=28.4382284382284, Blast_Score=140, Evalue=3e-33,
Organism=Homo sapiens, GI24119277, Length=400, Percent_Identity=28.75, Blast_Score=139, Evalue=5e-33,
Organism=Homo sapiens, GI226442709, Length=408, Percent_Identity=28.1862745098039, Blast_Score=130, Evalue=3e-30,
Organism=Homo sapiens, GI188536080, Length=406, Percent_Identity=23.1527093596059, Blast_Score=92, Evalue=8e-19,
Organism=Homo sapiens, GI38679950, Length=406, Percent_Identity=23.1527093596059, Blast_Score=92, Evalue=8e-19,
Organism=Homo sapiens, GI38679946, Length=406, Percent_Identity=23.1527093596059, Blast_Score=92, Evalue=8e-19,
Organism=Escherichia coli, GI145693181, Length=415, Percent_Identity=30.8433734939759, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1789016, Length=415, Percent_Identity=30.3614457831325, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1786991, Length=434, Percent_Identity=29.9539170506912, Blast_Score=162, Evalue=5e-41,
Organism=Escherichia coli, GI1788044, Length=417, Percent_Identity=29.2565947242206, Blast_Score=158, Evalue=6e-40,
Organism=Escherichia coli, GI1789759, Length=422, Percent_Identity=27.7251184834123, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI1787560, Length=415, Percent_Identity=29.1566265060241, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1786349, Length=395, Percent_Identity=23.5443037974684, Blast_Score=78, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI25144271, Length=430, Percent_Identity=28.6046511627907, Blast_Score=170, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI71992977, Length=422, Percent_Identity=28.436018957346, Blast_Score=158, Evalue=5e-39,
Organism=Caenorhabditis elegans, GI32564660, Length=447, Percent_Identity=29.5302013422819, Blast_Score=150, Evalue=9e-37,
Organism=Caenorhabditis elegans, GI25144274, Length=254, Percent_Identity=31.8897637795276, Blast_Score=134, Evalue=7e-32,
Organism=Caenorhabditis elegans, GI17541228, Length=377, Percent_Identity=24.6684350132626, Blast_Score=93, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6323470, Length=415, Percent_Identity=32.289156626506, Blast_Score=180, Evalue=4e-46,
Organism=Saccharomyces cerevisiae, GI6324432, Length=432, Percent_Identity=27.5462962962963, Blast_Score=138, Evalue=2e-33,
Organism=Saccharomyces cerevisiae, GI6324386, Length=429, Percent_Identity=26.1072261072261, Blast_Score=104, Evalue=4e-23,
Organism=Drosophila melanogaster, GI28574759, Length=461, Percent_Identity=29.5010845986985, Blast_Score=165, Evalue=7e-41,
Organism=Drosophila melanogaster, GI161085790, Length=448, Percent_Identity=29.0178571428571, Blast_Score=158, Evalue=6e-39,
Organism=Drosophila melanogaster, GI21357415, Length=422, Percent_Identity=27.7251184834123, Blast_Score=150, Evalue=1e-36,
Organism=Drosophila melanogaster, GI21356575, Length=423, Percent_Identity=27.8959810874704, Blast_Score=145, Evalue=8e-35,
Organism=Drosophila melanogaster, GI281366494, Length=389, Percent_Identity=24.6786632390745, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24667139, Length=389, Percent_Identity=24.6786632390745, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24667143, Length=389, Percent_Identity=24.6786632390745, Blast_Score=95, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005814
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00202 Aminotran_3 [H]

EC number: 2.6.1.13 [C]

Molecular weight: Translated: 48258; Mature: 48126

Theoretical pI: Translated: 6.14; Mature: 6.14

Prosite motif: PS00600 AA_TRANSFER_CLASS_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSYLIKPELDGNYPSVSHGKGSYVYDQEGNKYLDGASGAVTCNIGHGTEDIIQALKEQL
CCCEEECCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCEEEEECCCCHHHHHHHHHHHH
DSVSFVYRSQFTSTPAEELALFLADHLPGGLNWSFFVNSGSEAVETAMKIAVQYWQEKGQ
HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCH
YQKSVFLSRWGSYHGITLGALSLSGFYERRYRFTQLLERFPAVSAPNMYRSELQGEEFVK
HHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHH
AAAAELETAVQRIGSSFIAGFVAEPIVGAAGAAITPPAGYYEALEDVCRRHGILFIADEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCEEEEHHHH
MTGLGRTGRMLASEHWGIAPDIAVLGKGLGAGYAPIAAAVASDDIIETIKRGSGVIMSGH
HHCCCCCCHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECC
TYSANPYCARAALEVLRYVKKHELLRQSEEKGVMLKRKLEEIKERSGVIGDVRGKGLLIG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEECCCCEEEEE
VEFVKDKTTKDVFSKKQAFTEKIIKAAKKRGLLIYPAKPGIDSGEGDAVIIAPPFTISYA
EHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEECCCEECHH
ELDELSDLFSQAAEEVEKMMKKD
HHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GSYLIKPELDGNYPSVSHGKGSYVYDQEGNKYLDGASGAVTCNIGHGTEDIIQALKEQL
CCEEECCCCCCCCCCCCCCCCCEEEECCCCEEECCCCCEEEEECCCCHHHHHHHHHHHH
DSVSFVYRSQFTSTPAEELALFLADHLPGGLNWSFFVNSGSEAVETAMKIAVQYWQEKGQ
HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCH
YQKSVFLSRWGSYHGITLGALSLSGFYERRYRFTQLLERFPAVSAPNMYRSELQGEEFVK
HHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHH
AAAAELETAVQRIGSSFIAGFVAEPIVGAAGAAITPPAGYYEALEDVCRRHGILFIADEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCEEEEHHHH
MTGLGRTGRMLASEHWGIAPDIAVLGKGLGAGYAPIAAAVASDDIIETIKRGSGVIMSGH
HHCCCCCCHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECC
TYSANPYCARAALEVLRYVKKHELLRQSEEKGVMLKRKLEEIKERSGVIGDVRGKGLLIG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEECCCCEEEEE
VEFVKDKTTKDVFSKKQAFTEKIIKAAKKRGLLIYPAKPGIDSGEGDAVIIAPPFTISYA
EHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEECCCEECHH
ELDELSDLFSQAAEEVEKMMKKD
HHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Pyridoxal Phosphate. [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 2-Oxoglutarate; Ornithine [C]

Specific reaction: 2-Oxoglutarate + Ornithine --> L-Glutamate + L-Glutamate 5-semialdehyde [C]

General reaction: Amino group transfer [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]