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The map label for this gene is yodJ [H]

Identifier: 154686373

GI number: 154686373

Start: 2059749

End: 2060567

Strand: Reverse

Name: yodJ [H]

Synonym: RBAM_019410

Alternate gene names: 154686373

Gene position: 2060567-2059749 (Counterclockwise)

Preceding gene: 154686374

Following gene: 154686370

Centisome position: 52.58

GC content: 43.96

Gene sequence:

>819_bases
ATGAAGAAATCCACTAAATGGTTCTCGCTCGCTGCCGCTCTCAGCGTAACCGCAATCGTGGGAACCGGCTGCAGCATTTC
AGGCGGCGACAGCCACAAGGACACAAAAACAGCAGCTGAAACAAAACAATCAGATGACACATCAAGCAAAAAAACAACGA
AGGCAGAAAACAGCGATTTTGTATTGGAGAGCAAATATTTTAATGATATTAAAGAAGTGAACGGGCTTGAGACCATTCAA
AACCCGACAAATACACTTGCGCTCGTGAATAAGACATACACGCTGCCGGGAGATTATAAACCGAATGATCTCGTGATCCC
GAAAGTCGAATTTTCTTTTACTGAGAAAATCGAGAAACGATATATCCGCAAACCTGCCGCCGATGCTTTGGCGGAACTAT
TCAGCGCCGGGAAAAAAGAAGGTTATGACCTGGTTGCCGTTTCAGGATACCGCTCTTATGACAGACAGAAAGTTATTTTC
GATAATGAAGTCAGTCTGAAAGGTGAAAAAAAGGCGAAAGAAGCCGTCGCATATCCGGGGCAAAGCGAACACCAGACGGG
GCTTGCCATGGACATTTCCAGCAAAAGCAACGGATATGAGCTGAATGAAGCGTTCGGAAACACGGCGGACGGCAAATGGG
TGAAAGACCATGCGTATGAATACGGCTTTATCATCCGCTATCCTAAAGGAAAAGAAAATGTCACAAAGTATGAGTATGAA
CCATGGCATTTACGCTATGTAGGCAAAAAAGCGGCAAAAGCCATCCATGACCATCAATTAACACTTGAAGAATATTTTAA
TGAAGTAAAGAAAGTGTAA

Upstream 100 bases:

>100_bases
TGCATACTGTATCGTAAACTTGAGATGAGGGTTATGCTGATTAAAGCAGCCCTCTTCTTTATGCATCGCCCTGATTCAAA
AAAAGAAAGGTAAGTGTAAA

Downstream 100 bases:

>100_bases
TAAGAAGAAGCCCGCTTGAAAAATAGAAAGCGGGCTTTCTTTATTACCAGAAGAGTAAACCTCCAAGCGCAAATCCGGTA
ATGAAACCAAGGCCGATACC

Product: YodJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MKKSTKWFSLAAALSVTAIVGTGCSISGGDSHKDTKTAAETKQSDDTSSKKTTKAENSDFVLESKYFNDIKEVNGLETIQ
NPTNTLALVNKTYTLPGDYKPNDLVIPKVEFSFTEKIEKRYIRKPAADALAELFSAGKKEGYDLVAVSGYRSYDRQKVIF
DNEVSLKGEKKAKEAVAYPGQSEHQTGLAMDISSKSNGYELNEAFGNTADGKWVKDHAYEYGFIIRYPKGKENVTKYEYE
PWHLRYVGKKAAKAIHDHQLTLEEYFNEVKKV

Sequences:

>Translated_272_residues
MKKSTKWFSLAAALSVTAIVGTGCSISGGDSHKDTKTAAETKQSDDTSSKKTTKAENSDFVLESKYFNDIKEVNGLETIQ
NPTNTLALVNKTYTLPGDYKPNDLVIPKVEFSFTEKIEKRYIRKPAADALAELFSAGKKEGYDLVAVSGYRSYDRQKVIF
DNEVSLKGEKKAKEAVAYPGQSEHQTGLAMDISSKSNGYELNEAFGNTADGKWVKDHAYEYGFIIRYPKGKENVTKYEYE
PWHLRYVGKKAAKAIHDHQLTLEEYFNEVKKV
>Mature_272_residues
MKKSTKWFSLAAALSVTAIVGTGCSISGGDSHKDTKTAAETKQSDDTSSKKTTKAENSDFVLESKYFNDIKEVNGLETIQ
NPTNTLALVNKTYTLPGDYKPNDLVIPKVEFSFTEKIEKRYIRKPAADALAELFSAGKKEGYDLVAVSGYRSYDRQKVIF
DNEVSLKGEKKAKEAVAYPGQSEHQTGLAMDISSKSNGYELNEAFGNTADGKWVKDHAYEYGFIIRYPKGKENVTKYEYE
PWHLRYVGKKAAKAIHDHQLTLEEYFNEVKKV

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 30473; Mature: 30473

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSTKWFSLAAALSVTAIVGTGCSISGGDSHKDTKTAAETKQSDDTSSKKTTKAENSDF
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCE
VLESKYFNDIKEVNGLETIQNPTNTLALVNKTYTLPGDYKPNDLVIPKVEFSFTEKIEKR
EEEHHHHHHHHHCCCHHHHCCCCCEEEEEEEEEECCCCCCCCCEEEEEECHHHHHHHHHH
YIRKPAADALAELFSAGKKEGYDLVAVSGYRSYDRQKVIFDNEVSLKGEKKAKEAVAYPG
HHCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCCCHHHHHHHCCCC
QSEHQTGLAMDISSKSNGYELNEAFGNTADGKWVKDHAYEYGFIIRYPKGKENVTKYEYE
CCCCCCCEEEEECCCCCCEEHHHHCCCCCCCCEEHHCCEEEEEEEECCCCCCCCCEECCC
PWHLRYVGKKAAKAIHDHQLTLEEYFNEVKKV
CEEEEEHHHHHHHHHHHCCCCHHHHHHHHHCC
>Mature Secondary Structure
MKKSTKWFSLAAALSVTAIVGTGCSISGGDSHKDTKTAAETKQSDDTSSKKTTKAENSDF
CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCE
VLESKYFNDIKEVNGLETIQNPTNTLALVNKTYTLPGDYKPNDLVIPKVEFSFTEKIEKR
EEEHHHHHHHHHCCCHHHHCCCCCEEEEEEEEEECCCCCCCCCEEEEEECHHHHHHHHHH
YIRKPAADALAELFSAGKKEGYDLVAVSGYRSYDRQKVIFDNEVSLKGEKKAKEAVAYPG
HHCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEEEECCCCCCCCCHHHHHHHCCCC
QSEHQTGLAMDISSKSNGYELNEAFGNTADGKWVKDHAYEYGFIIRYPKGKENVTKYEYE
CCCCCCCEEEEECCCCCCEEHHHHCCCCCCCCEEHHCCEEEEEEEECCCCCCCCCEECCC
PWHLRYVGKKAAKAIHDHQLTLEEYFNEVKKV
CEEEEEHHHHHHHHHHHCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]