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The map label for this gene is qacR [H]

Identifier: 154685510

GI number: 154685510

Start: 1053471

End: 1054091

Strand: Reverse

Name: qacR [H]

Synonym: RBAM_010760

Alternate gene names: 154685510

Gene position: 1054091-1053471 (Counterclockwise)

Preceding gene: 154685511

Following gene: 154685509

Centisome position: 26.9

GC content: 43.48

Gene sequence:

>621_bases
GTGACAAATACAAAAGGCGGTGCCGGAAAGAGCGAAAAGACGAAGAACAGGCTCGTATCCGCTTCGCGTGACTTATTTGC
AAAAAAAGGATATTCAGAAACATCGATTCGGGATATTTTAGAGGCGGCCGAAATCAGTAAAGGCAATCTATATCACCATT
TTAAAGGAAAAGAGTTTCTGTTTCTTCATATCATGGAAGAGGATCACCGCGTGATGATCGAGACGTGGAGGGAAATGGAA
GCTGATCTGAAAGATGCTGCCGAAAAACTGGCGGGCTTTGCGGAGCTGCTCAGCCGGATGAGCATCAATTACCCGCTTAT
GAGAGCAAGTGAAGAGTTTTATGCGAGTGCGTTTACGTCAGAGGAGGTCGTAAAGCGGCTCAACAAAATTGATATTGAAT
ATGACGATGTGATGAGAGAGATCTTAGAAGAGGGAAATCAAGACGGCAGCTGGTCCATTCATCATGTCGAATCAAAAGTA
AAAATCCTGCTATCCGTCTTCTACGGTTTAGATGTGTTATATAAAAACGATACCATTCAGCAAAGAATCGAATTGCAAAA
AGAAGCCATCTCCGTGTTTATTCACGGGTCGATCAGCGCTGATAAACAGAATGACAGCTGA

Upstream 100 bases:

>100_bases
ACCCTTTATAATAAAATAAACCAACTGGTCGGTTTTAAACGAACCGAGCCCCGCTTTGCCGGGACAACGATATGAATGAG
GCGGAAAGGATCTGTGTGAA

Downstream 100 bases:

>100_bases
CAAAGGAGAAACAACATGCAAAAACCGATCAGAGAACAAAAGGCTGTACTCATCATCTTATTAAGCAATATATTTATTGC
GTTTTTAGGCATCGGATTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MTNTKGGAGKSEKTKNRLVSASRDLFAKKGYSETSIRDILEAAEISKGNLYHHFKGKEFLFLHIMEEDHRVMIETWREME
ADLKDAAEKLAGFAELLSRMSINYPLMRASEEFYASAFTSEEVVKRLNKIDIEYDDVMREILEEGNQDGSWSIHHVESKV
KILLSVFYGLDVLYKNDTIQQRIELQKEAISVFIHGSISADKQNDS

Sequences:

>Translated_206_residues
MTNTKGGAGKSEKTKNRLVSASRDLFAKKGYSETSIRDILEAAEISKGNLYHHFKGKEFLFLHIMEEDHRVMIETWREME
ADLKDAAEKLAGFAELLSRMSINYPLMRASEEFYASAFTSEEVVKRLNKIDIEYDDVMREILEEGNQDGSWSIHHVESKV
KILLSVFYGLDVLYKNDTIQQRIELQKEAISVFIHGSISADKQNDS
>Mature_205_residues
TNTKGGAGKSEKTKNRLVSASRDLFAKKGYSETSIRDILEAAEISKGNLYHHFKGKEFLFLHIMEEDHRVMIETWREMEA
DLKDAAEKLAGFAELLSRMSINYPLMRASEEFYASAFTSEEVVKRLNKIDIEYDDVMREILEEGNQDGSWSIHHVESKVK
ILLSVFYGLDVLYKNDTIQQRIELQKEAISVFIHGSISADKQNDS

Specific function: Transcriptional repressor of qacA. Binds to IR1, an unusually long 28 bp operator, which is located downstream from the qacA promoter and overlaps its transcription start site. QacR is induced from its IR1 site by binding to one of many structurally dissi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR013571
- InterPro:   IPR001647 [H]

Pfam domain/function: PF08360 TetR_C_5; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 23616; Mature: 23485

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNTKGGAGKSEKTKNRLVSASRDLFAKKGYSETSIRDILEAAEISKGNLYHHFKGKEFL
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCEEE
FLHIMEEDHRVMIETWREMEADLKDAAEKLAGFAELLSRMSINYPLMRASEEFYASAFTS
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHCCH
EEVVKRLNKIDIEYDDVMREILEEGNQDGSWSIHHVESKVKILLSVFYGLDVLYKNDTIQ
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHEECCHHHH
QRIELQKEAISVFIHGSISADKQNDS
HHHHHHHHHHEEEEECCCCCCCCCCC
>Mature Secondary Structure 
TNTKGGAGKSEKTKNRLVSASRDLFAKKGYSETSIRDILEAAEISKGNLYHHFKGKEFL
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCEEE
FLHIMEEDHRVMIETWREMEADLKDAAEKLAGFAELLSRMSINYPLMRASEEFYASAFTS
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHCCH
EEVVKRLNKIDIEYDDVMREILEEGNQDGSWSIHHVESKVKILLSVFYGLDVLYKNDTIQ
HHHHHHHHHCCCCHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHEECCHHHH
QRIELQKEAISVFIHGSISADKQNDS
HHHHHHHHHHEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]