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The map label for this gene is yhfW [H]

Identifier: 154685491

GI number: 154685491

Start: 1038222

End: 1039745

Strand: Reverse

Name: yhfW [H]

Synonym: RBAM_010570

Alternate gene names: 154685491

Gene position: 1039745-1038222 (Counterclockwise)

Preceding gene: 154685493

Following gene: 154685490

Centisome position: 26.53

GC content: 50.98

Gene sequence:

>1524_bases
TTGACTACTTTTTCAAACGAAGAACCGGCTTCCTATTGGAAAGCAACAGCTGACATTCCTTCCTTTCCCGCCCTCACTGA
AGATACGGAATGTGACGTTGCGGTTATCGGCGGAGGAATTACGGGCCTGACAACGGCATACGAACTGACGAAAAGAGGTT
TCCGTGTCGCTGTCATTGAAGCAGACCGGATTTTAAACGGGACGACCGCGGGCACGACCGCAAAAATCACCGCCCAGCAT
GATTTCATCTATGCCGATCTTATTCAGCAGATCGGCCTGACCAGCGCAAGGCTGTATTTCGAAGCCCATCTCCGCGCCAT
GGAAGACATGAAGCAGATCATCAAGGACCTTTCGATTGACTGCAGACTGATTGAACAAGACGCATATCTTTACACCAATA
CAGAATCAGGCGTCAAAAAAATCCGCAGTGAGCAGGAAGCTTATACCAAGCTCGGTATTGAACACGAGCTTGTGAAAGAA
CTTCCCGTACCCGTTGATTGCAGGCTCGGTCTCGCCATGAAGAATCAGGCGCAATTCCATCCGCTTTTATATGGCGCGGC
GCTCGTCAATGAGATCGTTAAAAACGGGGCGCGGATTTTTGAACAGACGGCTGCGATCGACATAAAAAAAGAACCGCAGC
CGGAAGTGGTCACGAAAAACAGACACGGCATCAAGTGCAGCTATATTGTCTGCTCTTCCCACTTTCCTTTTTATGACGGA
GGCGGGCTTTATGCCGCCAGAATGTATGCCAGCAGATCCTACGTACTCGCGGTAAAGCCGAAACAAGCGTATCCGGACGG
GATGTATCTCAGCATAGACAAGCCGTCCAGATCACTGCGATACACCGATTTGAACGGTGAAAAACTGGTTCTTGTCGGCG
GCGAAAGCCACAAAACAGGCCAGGGAAAAGAAATGTCCGAGCATTACGAAGCACTGAAACAATTTGCGGAAGACACAATC
GGAGTTGAAAGCATCCCATATCATTGGTCTGCACAAGACCTTGTCACCATTGACAAAATTCCGTTCATCGGTCCCATCTC
GGGCGATGAAGAACATATTTTGGCGGCGACCGGTTTTAAAAAATGGGGCATGACAAGCTCAGCGCTCGCCGCGAAGCTTT
TGGCTGATCATATTCAAAACAAAAAGAACCCGTTTTCCGGCCTGTTTATTCCGTCACGCTTCCACGCAGATCCGGGACTG
AAAAAACTGATTTCCTATAATGCCGACGTGGCCAAACACCTTATCTCGGGCAAACTTGAGAGGCCAGACGCTTCACCTGA
GACTCTTCGGCCCGGGGAGGGAAAAATCGTAACGGTAAACGGCAAACGGGCCGGCGCCTATAAAGATGAAAAAGGCTGTC
TGCATCTTGTCGATACGACATGCACCCATTTGGGCTGTGAGGTCGAATGGAATGACGGCGAACGGACGTGGGACTGTCCT
TGTCACGGGTCCCGGTTCACACCCGACGGCGGGGTTGCCGAAGGTCCCGCCATCAAGCCGCTGAAGCGCCTCAGCCAAGA
TTGA

Upstream 100 bases:

>100_bases
ACTATATTATGAGTAATTTGAGCATCTTATACGAATTTCATGTATGAACAGAGTCTTATTGGAAAAATTAAGAATATACA
ACAGAGGAGGTAAATCTGAA

Downstream 100 bases:

>100_bases
CTAAACCATTCTGTACGAATGGTTTTATTTTTTTTTGCATTAAAATATTTTTATCAGATTCCTTCATTCAAGTTCCTTCC
ATACCGATAAAAAGAAAAAG

Product: YhfW

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 507; Mature: 506

Protein sequence:

>507_residues
MTTFSNEEPASYWKATADIPSFPALTEDTECDVAVIGGGITGLTTAYELTKRGFRVAVIEADRILNGTTAGTTAKITAQH
DFIYADLIQQIGLTSARLYFEAHLRAMEDMKQIIKDLSIDCRLIEQDAYLYTNTESGVKKIRSEQEAYTKLGIEHELVKE
LPVPVDCRLGLAMKNQAQFHPLLYGAALVNEIVKNGARIFEQTAAIDIKKEPQPEVVTKNRHGIKCSYIVCSSHFPFYDG
GGLYAARMYASRSYVLAVKPKQAYPDGMYLSIDKPSRSLRYTDLNGEKLVLVGGESHKTGQGKEMSEHYEALKQFAEDTI
GVESIPYHWSAQDLVTIDKIPFIGPISGDEEHILAATGFKKWGMTSSALAAKLLADHIQNKKNPFSGLFIPSRFHADPGL
KKLISYNADVAKHLISGKLERPDASPETLRPGEGKIVTVNGKRAGAYKDEKGCLHLVDTTCTHLGCEVEWNDGERTWDCP
CHGSRFTPDGGVAEGPAIKPLKRLSQD

Sequences:

>Translated_507_residues
MTTFSNEEPASYWKATADIPSFPALTEDTECDVAVIGGGITGLTTAYELTKRGFRVAVIEADRILNGTTAGTTAKITAQH
DFIYADLIQQIGLTSARLYFEAHLRAMEDMKQIIKDLSIDCRLIEQDAYLYTNTESGVKKIRSEQEAYTKLGIEHELVKE
LPVPVDCRLGLAMKNQAQFHPLLYGAALVNEIVKNGARIFEQTAAIDIKKEPQPEVVTKNRHGIKCSYIVCSSHFPFYDG
GGLYAARMYASRSYVLAVKPKQAYPDGMYLSIDKPSRSLRYTDLNGEKLVLVGGESHKTGQGKEMSEHYEALKQFAEDTI
GVESIPYHWSAQDLVTIDKIPFIGPISGDEEHILAATGFKKWGMTSSALAAKLLADHIQNKKNPFSGLFIPSRFHADPGL
KKLISYNADVAKHLISGKLERPDASPETLRPGEGKIVTVNGKRAGAYKDEKGCLHLVDTTCTHLGCEVEWNDGERTWDCP
CHGSRFTPDGGVAEGPAIKPLKRLSQD
>Mature_506_residues
TTFSNEEPASYWKATADIPSFPALTEDTECDVAVIGGGITGLTTAYELTKRGFRVAVIEADRILNGTTAGTTAKITAQHD
FIYADLIQQIGLTSARLYFEAHLRAMEDMKQIIKDLSIDCRLIEQDAYLYTNTESGVKKIRSEQEAYTKLGIEHELVKEL
PVPVDCRLGLAMKNQAQFHPLLYGAALVNEIVKNGARIFEQTAAIDIKKEPQPEVVTKNRHGIKCSYIVCSSHFPFYDGG
GLYAARMYASRSYVLAVKPKQAYPDGMYLSIDKPSRSLRYTDLNGEKLVLVGGESHKTGQGKEMSEHYEALKQFAEDTIG
VESIPYHWSAQDLVTIDKIPFIGPISGDEEHILAATGFKKWGMTSSALAAKLLADHIQNKKNPFSGLFIPSRFHADPGLK
KLISYNADVAKHLISGKLERPDASPETLRPGEGKIVTVNGKRAGAYKDEKGCLHLVDTTCTHLGCEVEWNDGERTWDCPC
HGSRFTPDGGVAEGPAIKPLKRLSQD

Specific function: Unknown

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1787559, Length=404, Percent_Identity=23.019801980198, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR017941
- InterPro:   IPR005805 [H]

Pfam domain/function: PF01266 DAO; PF00355 Rieske [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 55888; Mature: 55757

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTFSNEEPASYWKATADIPSFPALTEDTECDVAVIGGGITGLTTAYELTKRGFRVAVIE
CCCCCCCCCHHHHEECCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEE
ADRILNGTTAGTTAKITAQHDFIYADLIQQIGLTSARLYFEAHLRAMEDMKQIIKDLSID
ECCEECCCCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
CRLIEQDAYLYTNTESGVKKIRSEQEAYTKLGIEHELVKELPVPVDCRLGLAMKNQAQFH
EEEEECCCEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEECCEECCCCCCC
PLLYGAALVNEIVKNGARIFEQTAAIDIKKEPQPEVVTKNRHGIKCSYIVCSSHFPFYDG
HHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEECCCCCCEEEEEEEECCCCEECC
GGLYAARMYASRSYVLAVKPKQAYPDGMYLSIDKPSRSLRYTDLNGEKLVLVGGESHKTG
CCEEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEECCCCCCCC
QGKEMSEHYEALKQFAEDTIGVESIPYHWSAQDLVTIDKIPFIGPISGDEEHILAATGFK
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCH
KWGMTSSALAAKLLADHIQNKKNPFSGLFIPSRFHADPGLKKLISYNADVAKHLISGKLE
HCCCCHHHHHHHHHHHHHHCCCCCCCEEECCHHHCCCCCHHHHHHCCHHHHHHHHCCCCC
RPDASPETLRPGEGKIVTVNGKRAGAYKDEKGCLHLVDTTCTHLGCEVEWNDGERTWDCP
CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECHHHHCCCEEEECCCCEEECCC
CHGSRFTPDGGVAEGPAIKPLKRLSQD
CCCCCCCCCCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure 
TTFSNEEPASYWKATADIPSFPALTEDTECDVAVIGGGITGLTTAYELTKRGFRVAVIE
CCCCCCCCHHHHEECCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEE
ADRILNGTTAGTTAKITAQHDFIYADLIQQIGLTSARLYFEAHLRAMEDMKQIIKDLSID
ECCEECCCCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
CRLIEQDAYLYTNTESGVKKIRSEQEAYTKLGIEHELVKELPVPVDCRLGLAMKNQAQFH
EEEEECCCEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEECCEECCCCCCC
PLLYGAALVNEIVKNGARIFEQTAAIDIKKEPQPEVVTKNRHGIKCSYIVCSSHFPFYDG
HHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCEECCCCCCEEEEEEEECCCCEECC
GGLYAARMYASRSYVLAVKPKQAYPDGMYLSIDKPSRSLRYTDLNGEKLVLVGGESHKTG
CCEEEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCCEEEEECCCCEEEEECCCCCCCC
QGKEMSEHYEALKQFAEDTIGVESIPYHWSAQDLVTIDKIPFIGPISGDEEHILAATGFK
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCH
KWGMTSSALAAKLLADHIQNKKNPFSGLFIPSRFHADPGLKKLISYNADVAKHLISGKLE
HCCCCHHHHHHHHHHHHHHCCCCCCCEEECCHHHCCCCCHHHHHHCCHHHHHHHHCCCCC
RPDASPETLRPGEGKIVTVNGKRAGAYKDEKGCLHLVDTTCTHLGCEVEWNDGERTWDCP
CCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEECHHHHCCCEEEECCCCEEECCC
CHGSRFTPDGGVAEGPAIKPLKRLSQD
CCCCCCCCCCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]