BacMap

Definition	Bacillus amyloliquefaciens FZB42, complete genome.
Accession	NC_009725
Length	3,918,589

Click here to switch to the map view.

The map label for this gene is yfnA [H]

Identifier: 154685213

GI number: 154685213

Start: 745155

End: 746540

Strand: Reverse

Name: yfnA [H]

Synonym: RBAM_007580

Alternate gene names: 154685213

Gene position: 746540-745155 (Counterclockwise)

Preceding gene: 154685217

Following gene: 154685212

Centisome position: 19.05

GC content: 52.38

Gene sequence:

>1386_bases
ATGTCTTTACTATTTCGGAAAAAGCCGCTGGCCGACTTAAAGGCCCAGAGCAAACAGACCAGCCTGTCCCGCTCGTTAAG
CGCTTTTGACTTGGTTTTGCTCGGAATCGGCTGTGTTGTCGGCACGGGGATTTTTGTGATTACCGGGACTGTGGCCGCGA
CAGGCGCAGGACCGGCTTTGATTCTGTCGTTTGTGCTCGCGGGCCTTGCCTGCGCGCTCGCCGCGTTTTGTTATGCGGAA
TTTTCTTCATCCATTCCGATTTCAGGCAGCGTATATACGTATTCATATGTCACTCTCGGGGAGTGTCTCGCGTTTTTAAT
CGGATGGGACTTAATGCTTGAATATGTCATCGCGCTCGCCGCCGTCGCAACCGGCTGGTCATCCTATTTCCAGTCGCTTC
TTGCGGGCTTCGGGCTGCATCTTCCGGAGGCGCTGACCGCCGCACCCGGCAGCAAAACGGGTGCCGGGTTCAACCTGCCG
GCCGTTATCATTATTTTGGTCATTACCGCGATTGTTTCAAGGGGCGTGAAAGAAAGCACCCGCTTTAACAATGTCATTGT
ATTGATGAAAATTGCGATCATTCTGCTGTTTATCATCGTCGGTTTCGGCTACGTGAAACCGGAAAACTGGTCGCCGTTTA
TGCCGTTCGGAATGAAAGGCGTCATCACGAGCGCCGCGACCGTTTTCTTCGCGTATCTCGGATTTGATGCCGTGTCAAAC
GCGTCGGAAGAAGTGAAAAACCCGCAGAAATCAATGCCGGTCGGAATCATCGGCGCGCTCGCCATCTGCACCGTCCTTTA
CATTACGGTATCGCTCGTCCTGACGGGAATGCTTTCGTACACCAAGCTGAATGTCGGGGATCCGGTATCTTTCGCGCTCC
AATTTGTCGGCCAGAACAAGATAGCAGGCATTATTTCCGTCGGCGCGATTATCGGGATTACAACGGTCATGCTCGCTCTG
CTTTACGCTCAGGTGCGCCTTACATTTGCGATGAGCAGAGACGGCCTTTTGCCCCGCATGTTTTCCAAGGTTCACCCGCG
TTTTAAAACACCGTTTCAAAACACATGGGTGACGGGGATCGTTGCCGCCGGGATCGCGGGTTTTATTGATTTGGGAACCT
TGGCGCATCTCGTCAACATGGGAACCTTGGCGGCCTTTACGGTCATTGCGATCGCCGTCATCGTTTTAAGAAAGAAACAT
CCGGAGATCAAATCTTCCTTCCGTGTTCCTTTCGTGCCTTTTGTGCCGATCATCAGCGCATGCTTATGCCTGTATCTCGC
AAGCAGCCTGCCGGGCGTGACATGGCTCGCCTTTGTCATCTGGATCGCCGCCGGGATCGTCGTTTATATGATGTATTCGA
GAAAACACAGTTTGTTAAATAAATAA

Upstream 100 bases:

>100_bases
GTGGAAAATTCTTTAATTGACTGCGAGAAATTTCGACAATATAATACAAACGTCAGTGTATATAATGATAAGAATATTAT
GAATTTTCAGGAGGACCCAT

Downstream 100 bases:

>100_bases
AAAGGGAGGCTCTTTTTTCTGTTTGAGAAAGAAGAGCCTTTTTTGCACTTGATCATTCATTCACCTTATGAATAATATGG
TGTATGCTTCGTTTACATAA

Product: YfnA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 460

Protein sequence:

>461_residues
MSLLFRKKPLADLKAQSKQTSLSRSLSAFDLVLLGIGCVVGTGIFVITGTVAATGAGPALILSFVLAGLACALAAFCYAE
FSSSIPISGSVYTYSYVTLGECLAFLIGWDLMLEYVIALAAVATGWSSYFQSLLAGFGLHLPEALTAAPGSKTGAGFNLP
AVIIILVITAIVSRGVKESTRFNNVIVLMKIAIILLFIIVGFGYVKPENWSPFMPFGMKGVITSAATVFFAYLGFDAVSN
ASEEVKNPQKSMPVGIIGALAICTVLYITVSLVLTGMLSYTKLNVGDPVSFALQFVGQNKIAGIISVGAIIGITTVMLAL
LYAQVRLTFAMSRDGLLPRMFSKVHPRFKTPFQNTWVTGIVAAGIAGFIDLGTLAHLVNMGTLAAFTVIAIAVIVLRKKH
PEIKSSFRVPFVPFVPIISACLCLYLASSLPGVTWLAFVIWIAAGIVVYMMYSRKHSLLNK

Sequences:

>Translated_461_residues
MSLLFRKKPLADLKAQSKQTSLSRSLSAFDLVLLGIGCVVGTGIFVITGTVAATGAGPALILSFVLAGLACALAAFCYAE
FSSSIPISGSVYTYSYVTLGECLAFLIGWDLMLEYVIALAAVATGWSSYFQSLLAGFGLHLPEALTAAPGSKTGAGFNLP
AVIIILVITAIVSRGVKESTRFNNVIVLMKIAIILLFIIVGFGYVKPENWSPFMPFGMKGVITSAATVFFAYLGFDAVSN
ASEEVKNPQKSMPVGIIGALAICTVLYITVSLVLTGMLSYTKLNVGDPVSFALQFVGQNKIAGIISVGAIIGITTVMLAL
LYAQVRLTFAMSRDGLLPRMFSKVHPRFKTPFQNTWVTGIVAAGIAGFIDLGTLAHLVNMGTLAAFTVIAIAVIVLRKKH
PEIKSSFRVPFVPFVPIISACLCLYLASSLPGVTWLAFVIWIAAGIVVYMMYSRKHSLLNK
>Mature_460_residues
SLLFRKKPLADLKAQSKQTSLSRSLSAFDLVLLGIGCVVGTGIFVITGTVAATGAGPALILSFVLAGLACALAAFCYAEF
SSSIPISGSVYTYSYVTLGECLAFLIGWDLMLEYVIALAAVATGWSSYFQSLLAGFGLHLPEALTAAPGSKTGAGFNLPA
VIIILVITAIVSRGVKESTRFNNVIVLMKIAIILLFIIVGFGYVKPENWSPFMPFGMKGVITSAATVFFAYLGFDAVSNA
SEEVKNPQKSMPVGIIGALAICTVLYITVSLVLTGMLSYTKLNVGDPVSFALQFVGQNKIAGIISVGAIIGITTVMLALL
YAQVRLTFAMSRDGLLPRMFSKVHPRFKTPFQNTWVTGIVAAGIAGFIDLGTLAHLVNMGTLAAFTVIAIAVIVLRKKHP
EIKSSFRVPFVPFVPIISACLCLYLASSLPGVTWLAFVIWIAAGIVVYMMYSRKHSLLNK

Specific function: Probable Amino-Acid Or Metabolite Transport Protein. [C]

COG id: COG0531

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Homo sapiens, GI4507047, Length=435, Percent_Identity=36.551724137931, Blast_Score=261, Evalue=7e-70,
Organism=Homo sapiens, GI110347453, Length=399, Percent_Identity=40.3508771929825, Blast_Score=252, Evalue=5e-67,
Organism=Homo sapiens, GI258645169, Length=410, Percent_Identity=34.6341463414634, Blast_Score=251, Evalue=1e-66,
Organism=Homo sapiens, GI258614003, Length=410, Percent_Identity=34.390243902439, Blast_Score=250, Evalue=2e-66,
Organism=Homo sapiens, GI258614005, Length=410, Percent_Identity=34.390243902439, Blast_Score=250, Evalue=2e-66,
Organism=Homo sapiens, GI114326544, Length=441, Percent_Identity=34.0136054421769, Blast_Score=249, Evalue=3e-66,
Organism=Homo sapiens, GI114326550, Length=441, Percent_Identity=34.0136054421769, Blast_Score=249, Evalue=3e-66,
Organism=Homo sapiens, GI181337167, Length=417, Percent_Identity=36.6906474820144, Blast_Score=246, Evalue=5e-65,
Organism=Homo sapiens, GI186910308, Length=445, Percent_Identity=25.3932584269663, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI186910306, Length=445, Percent_Identity=25.3932584269663, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI186910304, Length=445, Percent_Identity=25.3932584269663, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI71979932, Length=426, Percent_Identity=25.1173708920188, Blast_Score=95, Evalue=2e-19,
Organism=Homo sapiens, GI115648063, Length=428, Percent_Identity=24.2990654205607, Blast_Score=94, Evalue=4e-19,
Organism=Homo sapiens, GI115648022, Length=428, Percent_Identity=24.2990654205607, Blast_Score=94, Evalue=4e-19,
Organism=Homo sapiens, GI187423910, Length=474, Percent_Identity=23.6286919831224, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI7657591, Length=474, Percent_Identity=23.6286919831224, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI7657683, Length=429, Percent_Identity=26.5734265734266, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI33286428, Length=389, Percent_Identity=25.706940874036, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI9790235, Length=303, Percent_Identity=23.4323432343234, Blast_Score=69, Evalue=9e-12,
Organism=Escherichia coli, GI87081869, Length=430, Percent_Identity=28.1395348837209, Blast_Score=115, Evalue=6e-27,
Organism=Escherichia coli, GI87082250, Length=465, Percent_Identity=27.9569892473118, Blast_Score=111, Evalue=1e-25,
Organism=Escherichia coli, GI87081708, Length=447, Percent_Identity=23.9373601789709, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI87082023, Length=425, Percent_Identity=26.1176470588235, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1788480, Length=447, Percent_Identity=25.2796420581655, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1786694, Length=407, Percent_Identity=25.7985257985258, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1786302, Length=438, Percent_Identity=23.0593607305936, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789017, Length=353, Percent_Identity=23.7960339943343, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1786789, Length=349, Percent_Identity=23.4957020057307, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081915, Length=433, Percent_Identity=23.094688221709, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1786602, Length=422, Percent_Identity=22.7488151658768, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI1790653, Length=430, Percent_Identity=22.093023255814, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17532491, Length=410, Percent_Identity=37.5609756097561, Blast_Score=263, Evalue=1e-70,
Organism=Caenorhabditis elegans, GI17533459, Length=418, Percent_Identity=34.9282296650718, Blast_Score=235, Evalue=3e-62,
Organism=Caenorhabditis elegans, GI17531343, Length=416, Percent_Identity=35.0961538461538, Blast_Score=228, Evalue=6e-60,
Organism=Caenorhabditis elegans, GI17540018, Length=428, Percent_Identity=24.5327102803738, Blast_Score=96, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI193208714, Length=412, Percent_Identity=26.6990291262136, Blast_Score=96, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI32566695, Length=412, Percent_Identity=26.6990291262136, Blast_Score=96, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI71993915, Length=424, Percent_Identity=23.5849056603774, Blast_Score=86, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17537453, Length=291, Percent_Identity=25.4295532646048, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71982612, Length=406, Percent_Identity=22.6600985221675, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71982608, Length=406, Percent_Identity=22.6600985221675, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17568033, Length=413, Percent_Identity=24.2130750605327, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI32566699, Length=323, Percent_Identity=26.3157894736842, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71995388, Length=431, Percent_Identity=23.8979118329466, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71995382, Length=431, Percent_Identity=23.8979118329466, Blast_Score=74, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6324990, Length=401, Percent_Identity=23.1920199501247, Blast_Score=68, Evalue=3e-12,
Organism=Saccharomyces cerevisiae, GI6319543, Length=367, Percent_Identity=24.7956403269755, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI221512776, Length=425, Percent_Identity=37.4117647058824, Blast_Score=294, Evalue=8e-80,
Organism=Drosophila melanogaster, GI24667468, Length=413, Percent_Identity=40.4358353510896, Blast_Score=294, Evalue=9e-80,
Organism=Drosophila melanogaster, GI24666159, Length=425, Percent_Identity=37.4117647058824, Blast_Score=294, Evalue=1e-79,
Organism=Drosophila melanogaster, GI24668806, Length=413, Percent_Identity=36.319612590799, Blast_Score=261, Evalue=9e-70,
Organism=Drosophila melanogaster, GI21356285, Length=413, Percent_Identity=36.319612590799, Blast_Score=261, Evalue=9e-70,
Organism=Drosophila melanogaster, GI24668802, Length=413, Percent_Identity=36.319612590799, Blast_Score=261, Evalue=9e-70,
Organism=Drosophila melanogaster, GI161077963, Length=396, Percent_Identity=35.8585858585859, Blast_Score=236, Evalue=2e-62,
Organism=Drosophila melanogaster, GI281366235, Length=411, Percent_Identity=36.9829683698297, Blast_Score=232, Evalue=4e-61,
Organism=Drosophila melanogaster, GI116007820, Length=411, Percent_Identity=36.9829683698297, Blast_Score=232, Evalue=4e-61,
Organism=Drosophila melanogaster, GI116007818, Length=412, Percent_Identity=35.9223300970874, Blast_Score=228, Evalue=1e-59,
Organism=Drosophila melanogaster, GI85725152, Length=412, Percent_Identity=35.9223300970874, Blast_Score=228, Evalue=1e-59,
Organism=Drosophila melanogaster, GI21357367, Length=358, Percent_Identity=25.1396648044693, Blast_Score=99, Evalue=5e-21,
Organism=Drosophila melanogaster, GI221331183, Length=460, Percent_Identity=25.8695652173913, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI17647653, Length=460, Percent_Identity=25.8695652173913, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24664379, Length=460, Percent_Identity=25.8695652173913, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24651635, Length=412, Percent_Identity=25.7281553398058, Blast_Score=92, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24651633, Length=412, Percent_Identity=25.7281553398058, Blast_Score=92, Evalue=9e-19,
Organism=Drosophila melanogaster, GI45550968, Length=435, Percent_Identity=22.2988505747126, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI19921172, Length=435, Percent_Identity=22.2988505747126, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24641995, Length=464, Percent_Identity=23.9224137931034, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24641993, Length=464, Percent_Identity=23.9224137931034, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR015606 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 49044; Mature: 48913

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SLLFRKKPLADLKAQSKQTSLSRSLSAFDLVLLGIGCVVGTGIFVITGTVAATGAGPAL
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEECHHHCCCCCHHH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HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]