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The map label for this gene is ydeR [H]

Identifier: 154685045

GI number: 154685045

Start: 560202

End: 561392

Strand: Reverse

Name: ydeR [H]

Synonym: RBAM_005830

Alternate gene names: 154685045

Gene position: 561392-560202 (Counterclockwise)

Preceding gene: 154685047

Following gene: 154685039

Centisome position: 14.33

GC content: 50.38

Gene sequence:

>1191_bases
ATGGCTAAAGAAACCAAACAAACAGCAGATCAGGGAATTTCACCTTGTTTAACCCTTCTTCTCGCAACGGCATGCGGTAT
CATTGTCGCTAATCTTTATTATGCACAGCCCTTGGCAGGATTCATTAGTGCGGCAATCGGACTTTCTCCAAGCAGCGCCG
GATTGATTGTCACGCTGACTCAAATCGGATACGTTGCCGGCTTACTGTTTCTCGTCCCTTTGGGAGACATTATCGAAAAC
AAAAAACTTGTCGTTGTATCGCTCCTTCTAAGCGCAGCCGCTTTGACACTGACAGCATTTGCGAAGCATGGAACACTGTT
TTTAGCCGCTGCGTTTTTCATCGGACTGGGATCAATTGCAGCCCAAGTGCTAGTTCCGTTCGCATCATACCTTGCACCTG
ACGCCGCACGCGGCCGGGTTGTCGGCAATGTGATGAGCGGCTTGCTGCTCGGTATTATGCTTTCCCGTCCGATATCCAGT
CTGGTCGCTGATGTATGGGGGTGGAATGCCATATTTGCTTTATCCGCCGCGTTAAGTGTTGTCCTGGCAATCGTCTTATC
AAAAGTGCTTCCTGCCAGAAAACCAACAGCAAACACAAGCTACACCGTCTTACTCGGTTCAATGTGGAAGCTGCTGCGCA
CGACTCCGGTCTTACGCCGCCGTGCCATTTATCATGCGTTTGTATTTGGCGCTTTCAGCTTGTTCTGGACGACTGTACCT
TTATTATTGTCCGGTCCTGCTTTTCATTTTTCTCAAAAGGCAATCGCGCTGTATGCATTAGCGGGCATTGCAGGTGCAGC
GGCTGCACCGATAGGCGGCCGTCTGGCTGATCGCGGCTTGACCCGGCTTGCCACCGGAATCGCTCTCGGTGTTGTCATCG
TTTCTTTATTACTCCCGCTCATGATTCAGAGCAGCTCCCCCGTCGGAATAGCAGTTCTGGTGGCCGCAGCTATCCTGTTG
GATATGGGGGTATCTGCCAATCTCGTACTCAGTCAGCGTGCCATTTTTTCGTTGGCACCTGAATTTCGCAGCCGATTAAA
CGGATTATTTATGGCCATCTTCTTTCTGGGCGGTGCTATAGGATCATCAATCGGAGGATGGGCATACGCCTCAGGCGGGT
GGAGTATCACATTATGGATTGGAATCGCGTTTCCAGTCATCGCATTGCTTTATTTCACCACGGAGAAATAA

Upstream 100 bases:

>100_bases
TTGATGAAACATAGACTCCAAAAGCCTCTGCGTAAAGGAGATGAATCAGCAAATCATTTATCAAGCATCATAAAAAACAC
TTAAAAAGGAGTTCATTCAT

Downstream 100 bases:

>100_bases
GCCATTCACCAAAAATAAGCCGTCAGGACCAAGCTGACAGCTTTTTTTGGTGTATTCTTCTTTACATCCTTCGGAACAAA
AAACCCCTGTTTCATGAGTA

Product: YdeR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MAKETKQTADQGISPCLTLLLATACGIIVANLYYAQPLAGFISAAIGLSPSSAGLIVTLTQIGYVAGLLFLVPLGDIIEN
KKLVVVSLLLSAAALTLTAFAKHGTLFLAAAFFIGLGSIAAQVLVPFASYLAPDAARGRVVGNVMSGLLLGIMLSRPISS
LVADVWGWNAIFALSAALSVVLAIVLSKVLPARKPTANTSYTVLLGSMWKLLRTTPVLRRRAIYHAFVFGAFSLFWTTVP
LLLSGPAFHFSQKAIALYALAGIAGAAAAPIGGRLADRGLTRLATGIALGVVIVSLLLPLMIQSSSPVGIAVLVAAAILL
DMGVSANLVLSQRAIFSLAPEFRSRLNGLFMAIFFLGGAIGSSIGGWAYASGGWSITLWIGIAFPVIALLYFTTEK

Sequences:

>Translated_396_residues
MAKETKQTADQGISPCLTLLLATACGIIVANLYYAQPLAGFISAAIGLSPSSAGLIVTLTQIGYVAGLLFLVPLGDIIEN
KKLVVVSLLLSAAALTLTAFAKHGTLFLAAAFFIGLGSIAAQVLVPFASYLAPDAARGRVVGNVMSGLLLGIMLSRPISS
LVADVWGWNAIFALSAALSVVLAIVLSKVLPARKPTANTSYTVLLGSMWKLLRTTPVLRRRAIYHAFVFGAFSLFWTTVP
LLLSGPAFHFSQKAIALYALAGIAGAAAAPIGGRLADRGLTRLATGIALGVVIVSLLLPLMIQSSSPVGIAVLVAAAILL
DMGVSANLVLSQRAIFSLAPEFRSRLNGLFMAIFFLGGAIGSSIGGWAYASGGWSITLWIGIAFPVIALLYFTTEK
>Mature_395_residues
AKETKQTADQGISPCLTLLLATACGIIVANLYYAQPLAGFISAAIGLSPSSAGLIVTLTQIGYVAGLLFLVPLGDIIENK
KLVVVSLLLSAAALTLTAFAKHGTLFLAAAFFIGLGSIAAQVLVPFASYLAPDAARGRVVGNVMSGLLLGIMLSRPISSL
VADVWGWNAIFALSAALSVVLAIVLSKVLPARKPTANTSYTVLLGSMWKLLRTTPVLRRRAIYHAFVFGAFSLFWTTVPL
LLSGPAFHFSQKAIALYALAGIAGAAAAPIGGRLADRGLTRLATGIALGVVIVSLLLPLMIQSSSPVGIAVLVAAAILLD
MGVSANLVLSQRAIFSLAPEFRSRLNGLFMAIFFLGGAIGSSIGGWAYASGGWSITLWIGIAFPVIALLYFTTEK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787880, Length=366, Percent_Identity=24.3169398907104, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41132; Mature: 41000

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCCCCCEEECCCCEEEHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AKETKQTADQGISPCLTLLLATACGIIVANLYYAQPLAGFISAAIGLSPSSAGLIVTLT
CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHH
QIGYVAGLLFLVPLGDIIENKKLVVVSLLLSAAALTLTAFAKHGTLFLAAAFFIGLGSIA
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
AQVLVPFASYLAPDAARGRVVGNVMSGLLLGIMLSRPISSLVADVWGWNAIFALSAALSV
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
VLAIVLSKVLPARKPTANTSYTVLLGSMWKLLRTTPVLRRRAIYHAFVFGAFSLFWTTVP
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLSGPAFHFSQKAIALYALAGIAGAAAAPIGGRLADRGLTRLATGIALGVVIVSLLLPL
HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIQSSSPVGIAVLVAAAILLDMGVSANLVLSQRAIFSLAPEFRSRLNGLFMAIFFLGGAI
HHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
GSSIGGWAYASGGWSITLWIGIAFPVIALLYFTTEK
HCCCCCCEEECCCCEEEHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]