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The map label for this gene is ydeL [H]

Identifier: 154685039

GI number: 154685039

Start: 554280

End: 555662

Strand: Reverse

Name: ydeL [H]

Synonym: RBAM_005770

Alternate gene names: 154685039

Gene position: 555662-554280 (Counterclockwise)

Preceding gene: 154685045

Following gene: 154685036

Centisome position: 14.18

GC content: 44.97

Gene sequence:

>1383_bases
ATGAAAAATATGATTTTCGCTTTCGAAAGCGATACCCCGAAATACAAACAAATTTACGAGCAATTTAAAACATTGATTGA
GCAGGGAAATATTCAGGCAGATGAGCGGCTGCCTTCGATTCGGGAGCTGGCAGATTCCCTGCGGGTAAGCCGCAATACAA
CGCTGATGGCTTATGATCTTCTTTTAGCGGAGGGATACATTCGCGGAGAAACACGCAAAGGTTATTTTGTAAATGAAGTA
GAACCTTCTTTATTTCAAAAAGAAAACGATGTTGTTTACGCTGAAAAAACCGAATCAACTCAGCCGGTCCTGATTGATTT
TCGCGCCGGAGCCGTCGATCAAAAGCATTTTCCTCTGAAAACATGGAGAAAATTATACAATCAAGTTTTGACATCAGAGA
AAAGCTTCCTGTACGGTGAACCGTTCGGCGAGAGAGACCTGCGTGAACAAATTGCCGCTTATCTCTTGGAATCCCGCGGA
GTGAAAACAGATGCGGATTCCATTATCATCGGCAGCAGCACCCAGCAGATGCTGATATATCTCAGCCGGATTCTGAAAGA
GGATTTTTCGGGAATGATCGTTGAAGACCCGGGATTTGACGGTGCCAGAGCGGCATTTCAATTTCACGGCCTATCTCTGG
AAACGATGCCTGTCTATGAAAACGGAGCTGATTTTTCTCAATTACATGCAATGAAAGAAAAATTAATCTATGTGACCCCA
TCCCATCACAGCCCTTACGGCGTAAGCATGTCCATTCAGCAGCGCCAAACTCTGATCAATTGGGTGAATCATAGAGAGGG
TTATATTCTTGAGGATGATTATGACAGTGAATTCCGTTATACACAGCAGCCGTTTCCCGCTCTTGCTTCCATTCAATCAG
ACCGGGTGATTTATTTAGGGAATTTCTCAAAATCCTTTCTTCCGGGCATCCGCATAAGCTATATGGTTTTGCCGCAGCGC
CTTTTGCACCGGTATAAAAAACGGTTTATTCATTTCGAAAGCACCGCTTCTTCGCTTAACCAGCTGACCATGGCTGAATT
GATGAAGGCCGGTGAATGGACCCGCCATATTAAGCGCATGCGCATTGTTTACAGGCGAAAAATGCAGCACTTGATTTCAC
ATGTAAAGCAGCAGTTCGGCGATCATGTGACGATCATCGGCGAGCAGTCGGGATTGTATATATTGGTGAGAGTTCACCTG
AACTATACAGAAGAAACATTAATCGAACGCGCTTTTCAGTACGGAGTGAAGGTATACCCTACCGCCGTTTATTTCGTTGC
CGAAAAACCCGAACCGCCGATCATAAAGCTAGGGTTCGCCCATCTTGATACGGATCAGATCACACAGGGCGTACAGCTTT
TGAGAAATGCTTGGCTGTCATGA

Upstream 100 bases:

>100_bases
AACATGGATTGATAAAGCGCTTTCCGCTATAATAAGATATCAACTGACATTTAAAAAGGTACAGTTAGGAATAAATACAC
ATGTCAGAGGAGAACATCTG

Downstream 100 bases:

>100_bases
AAGAAAAAAGGCGCCGAACGGCGCCTTTTTTTATTTCGTATTTCTTGTGAACTTCGGCAGTCCAAATATGATGGCGGCGA
TGCCGCAGATTCCGATGAAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 460; Mature: 460

Protein sequence:

>460_residues
MKNMIFAFESDTPKYKQIYEQFKTLIEQGNIQADERLPSIRELADSLRVSRNTTLMAYDLLLAEGYIRGETRKGYFVNEV
EPSLFQKENDVVYAEKTESTQPVLIDFRAGAVDQKHFPLKTWRKLYNQVLTSEKSFLYGEPFGERDLREQIAAYLLESRG
VKTDADSIIIGSSTQQMLIYLSRILKEDFSGMIVEDPGFDGARAAFQFHGLSLETMPVYENGADFSQLHAMKEKLIYVTP
SHHSPYGVSMSIQQRQTLINWVNHREGYILEDDYDSEFRYTQQPFPALASIQSDRVIYLGNFSKSFLPGIRISYMVLPQR
LLHRYKKRFIHFESTASSLNQLTMAELMKAGEWTRHIKRMRIVYRRKMQHLISHVKQQFGDHVTIIGEQSGLYILVRVHL
NYTEETLIERAFQYGVKVYPTAVYFVAEKPEPPIIKLGFAHLDTDQITQGVQLLRNAWLS

Sequences:

>Translated_460_residues
MKNMIFAFESDTPKYKQIYEQFKTLIEQGNIQADERLPSIRELADSLRVSRNTTLMAYDLLLAEGYIRGETRKGYFVNEV
EPSLFQKENDVVYAEKTESTQPVLIDFRAGAVDQKHFPLKTWRKLYNQVLTSEKSFLYGEPFGERDLREQIAAYLLESRG
VKTDADSIIIGSSTQQMLIYLSRILKEDFSGMIVEDPGFDGARAAFQFHGLSLETMPVYENGADFSQLHAMKEKLIYVTP
SHHSPYGVSMSIQQRQTLINWVNHREGYILEDDYDSEFRYTQQPFPALASIQSDRVIYLGNFSKSFLPGIRISYMVLPQR
LLHRYKKRFIHFESTASSLNQLTMAELMKAGEWTRHIKRMRIVYRRKMQHLISHVKQQFGDHVTIIGEQSGLYILVRVHL
NYTEETLIERAFQYGVKVYPTAVYFVAEKPEPPIIKLGFAHLDTDQITQGVQLLRNAWLS
>Mature_460_residues
MKNMIFAFESDTPKYKQIYEQFKTLIEQGNIQADERLPSIRELADSLRVSRNTTLMAYDLLLAEGYIRGETRKGYFVNEV
EPSLFQKENDVVYAEKTESTQPVLIDFRAGAVDQKHFPLKTWRKLYNQVLTSEKSFLYGEPFGERDLREQIAAYLLESRG
VKTDADSIIIGSSTQQMLIYLSRILKEDFSGMIVEDPGFDGARAAFQFHGLSLETMPVYENGADFSQLHAMKEKLIYVTP
SHHSPYGVSMSIQQRQTLINWVNHREGYILEDDYDSEFRYTQQPFPALASIQSDRVIYLGNFSKSFLPGIRISYMVLPQR
LLHRYKKRFIHFESTASSLNQLTMAELMKAGEWTRHIKRMRIVYRRKMQHLISHVKQQFGDHVTIIGEQSGLYILVRVHL
NYTEETLIERAFQYGVKVYPTAVYFVAEKPEPPIIKLGFAHLDTDQITQGVQLLRNAWLS

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=312, Percent_Identity=19.5512820512821, Blast_Score=73, Evalue=7e-13,
Organism=Homo sapiens, GI33469970, Length=312, Percent_Identity=19.5512820512821, Blast_Score=73, Evalue=7e-13,
Organism=Escherichia coli, GI1787710, Length=441, Percent_Identity=25.3968253968254, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1790797, Length=413, Percent_Identity=27.3607748184019, Blast_Score=116, Evalue=3e-27,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 53380; Mature: 53380

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNMIFAFESDTPKYKQIYEQFKTLIEQGNIQADERLPSIRELADSLRVSRNTTLMAYDL
CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEHHH
LLAEGYIRGETRKGYFVNEVEPSLFQKENDVVYAEKTESTQPVLIDFRAGAVDQKHFPLK
HHHCCCEECCCCCCEEEECCCHHHHCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCHH
TWRKLYNQVLTSEKSFLYGEPFGERDLREQIAAYLLESRGVKTDADSIIIGSSTQQMLIY
HHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHH
LSRILKEDFSGMIVEDPGFDGARAAFQFHGLSLETMPVYENGADFSQLHAMKEKLIYVTP
HHHHHHHCCCCEEEECCCCCCHHHHEEEECCEEEEEECCCCCCCHHHHHHHHHCEEEEEC
SHHSPYGVSMSIQQRQTLINWVNHREGYILEDDYDSEFRYTQQPFPALASIQSDRVIYLG
CCCCCCCCEEEHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHCCCCCCEEEEE
NFSKSFLPGIRISYMVLPQRLLHRYKKRFIHFESTASSLNQLTMAELMKAGEWTRHIKRM
CCCHHHCCCCEEHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
RIVYRRKMQHLISHVKQQFGDHVTIIGEQSGLYILVRVHLNYTEETLIERAFQYGVKVYP
HHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEEEEEECCCHHHHHHHHHHCCCEEEE
TAVYFVAEKPEPPIIKLGFAHLDTDQITQGVQLLRNAWLS
EEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKNMIFAFESDTPKYKQIYEQFKTLIEQGNIQADERLPSIRELADSLRVSRNTTLMAYDL
CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEHHH
LLAEGYIRGETRKGYFVNEVEPSLFQKENDVVYAEKTESTQPVLIDFRAGAVDQKHFPLK
HHHCCCEECCCCCCEEEECCCHHHHCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCHH
TWRKLYNQVLTSEKSFLYGEPFGERDLREQIAAYLLESRGVKTDADSIIIGSSTQQMLIY
HHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHH
LSRILKEDFSGMIVEDPGFDGARAAFQFHGLSLETMPVYENGADFSQLHAMKEKLIYVTP
HHHHHHHCCCCEEEECCCCCCHHHHEEEECCEEEEEECCCCCCCHHHHHHHHHCEEEEEC
SHHSPYGVSMSIQQRQTLINWVNHREGYILEDDYDSEFRYTQQPFPALASIQSDRVIYLG
CCCCCCCCEEEHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCHHHHCCCCCCEEEEE
NFSKSFLPGIRISYMVLPQRLLHRYKKRFIHFESTASSLNQLTMAELMKAGEWTRHIKRM
CCCHHHCCCCEEHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
RIVYRRKMQHLISHVKQQFGDHVTIIGEQSGLYILVRVHLNYTEETLIERAFQYGVKVYP
HHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEEEEEECCCHHHHHHHHHHCCCEEEE
TAVYFVAEKPEPPIIKLGFAHLDTDQITQGVQLLRNAWLS
EEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]