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The map label for this gene is dctB [H]

Identifier: 154684946

GI number: 154684946

Start: 471586

End: 472638

Strand: Reverse

Name: dctB [H]

Synonym: RBAM_004770

Alternate gene names: 154684946

Gene position: 472638-471586 (Counterclockwise)

Preceding gene: 154684955

Following gene: 154684945

Centisome position: 12.06

GC content: 47.29

Gene sequence:

>1053_bases
ATGAAAAGCTTGCTGACTTGTCTCAGCCTGATGGTACTCGGTATCGGAACCGCTTTATTCATCGGCTTTCATGATCGTTT
CTCAACGGAAGAACCGTATTATGATGACGAACAGGAAGGCCTGAAAGATCAAATCGTTTTCAAATTCAGCCATGTCGTTG
CTGAGAACACGCCAAAAGGGCGGGCGGCGAATAAGTTTGCCGACCTTGTCTATCAAAAGTCCGGCGGCACCATTAAAGTA
GAGGTGTTTCCAAACGGGAGCCTCTATTCAGATAATGAAGAAATAAACGCCCTCCAAAACGGGGACGTGCAATTCATCGC
TCCCTCCACCTCAAAGCTCGGATCACTGTCTCCCGAATGGGGTGTTTTGGATCTGCCGTACGCGTTTACAAACTATAAAG
CCGTGCAAGAAGGCCTCAACGGCAAAATCGGCACACGCCTGTTCGCTTCTTTAGAAAAGCATCATTTGAAAGGTCTGGCG
TACTGGACGAACGGGTTTAAGCAGCTTACGTCAAATAAAGGACCGATCTTCACTCCGGACGATTTGAAAGGACAGGCGCT
CAGGATCATGCCGAGCAGCGTGATCGAAGACCAATACCGCCTGCTCGGCGCGCACCCGCGGCAGGATTCCTTTAATTCCA
CGTTTCAGCTCTTGGAAAGCAATCTTGTAGACGGAGAAGAAAATACGATTTCAAATATCTATTCTAAAAAATTTTATAAT
GTTCAAGATTATTTGACAATCAGCAATCACGGGTACCTCGGTTATGCCGTGATGACCGACGAGCATTTCTGGAATTCGCA
GACAGAAAAAACGAGAACCATCTTAACGGAGGCGATGAGAGAAACGACGGAGTGGAACGAAGCCTCCGCTGAGAAAATGA
ATAAAGACCAGCTTGAAGAGATAAAGAAGAATTCATCCATTCATATTCATGTGCTGAGCAAAGCGGAAAAGAACACATGG
ATGAAACGCCTCGACCCGATTTACGGACAATATGAACAGGTGATCGGCCGCGGGCTTGTGCAGGATTTGTTATCCTTGCG
CCGCGAGCCTTAG

Upstream 100 bases:

>100_bases
GTGAGCTTTTTTTTCGTCATTGGCCTCTTCCTTTCCGTCTCTTTACGAAAACGGCCCGCCCGATTATGCTTGTTATAGAA
AATGGCGGAGGGGGTTTTCG

Downstream 100 bases:

>100_bases
CAGGACCAATACGCCCATCTCCGTTTCATCCCTTTTCCCGCCGGGGAAGTAAATAGGGACAGAGCAAAGAAAAGGAGATG
GAGACATGTTTACACATACG

Product: DctB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MKSLLTCLSLMVLGIGTALFIGFHDRFSTEEPYYDDEQEGLKDQIVFKFSHVVAENTPKGRAANKFADLVYQKSGGTIKV
EVFPNGSLYSDNEEINALQNGDVQFIAPSTSKLGSLSPEWGVLDLPYAFTNYKAVQEGLNGKIGTRLFASLEKHHLKGLA
YWTNGFKQLTSNKGPIFTPDDLKGQALRIMPSSVIEDQYRLLGAHPRQDSFNSTFQLLESNLVDGEENTISNIYSKKFYN
VQDYLTISNHGYLGYAVMTDEHFWNSQTEKTRTILTEAMRETTEWNEASAEKMNKDQLEEIKKNSSIHIHVLSKAEKNTW
MKRLDPIYGQYEQVIGRGLVQDLLSLRREP

Sequences:

>Translated_350_residues
MKSLLTCLSLMVLGIGTALFIGFHDRFSTEEPYYDDEQEGLKDQIVFKFSHVVAENTPKGRAANKFADLVYQKSGGTIKV
EVFPNGSLYSDNEEINALQNGDVQFIAPSTSKLGSLSPEWGVLDLPYAFTNYKAVQEGLNGKIGTRLFASLEKHHLKGLA
YWTNGFKQLTSNKGPIFTPDDLKGQALRIMPSSVIEDQYRLLGAHPRQDSFNSTFQLLESNLVDGEENTISNIYSKKFYN
VQDYLTISNHGYLGYAVMTDEHFWNSQTEKTRTILTEAMRETTEWNEASAEKMNKDQLEEIKKNSSIHIHVLSKAEKNTW
MKRLDPIYGQYEQVIGRGLVQDLLSLRREP
>Mature_350_residues
MKSLLTCLSLMVLGIGTALFIGFHDRFSTEEPYYDDEQEGLKDQIVFKFSHVVAENTPKGRAANKFADLVYQKSGGTIKV
EVFPNGSLYSDNEEINALQNGDVQFIAPSTSKLGSLSPEWGVLDLPYAFTNYKAVQEGLNGKIGTRLFASLEKHHLKGLA
YWTNGFKQLTSNKGPIFTPDDLKGQALRIMPSSVIEDQYRLLGAHPRQDSFNSTFQLLESNLVDGEENTISNIYSKKFYN
VQDYLTISNHGYLGYAVMTDEHFWNSQTEKTRTILTEAMRETTEWNEASAEKMNKDQLEEIKKNSSIHIHVLSKAEKNTW
MKRLDPIYGQYEQVIGRGLVQDLLSLRREP

Specific function: Part of the binding-protein-dependent transport system for uptake of C4-dicarboxylates. Responsible for growth on fumarate and succinate but not malate. Is not directly involved in C4-dicarboxylate uptake, but plays a sensory role in the dctS/dctR two-com

COG id: COG1638

COG function: function code G; TRAP-type C4-dicarboxylate transport system, periplasmic component

Gene ontology:

Cell location: Secreted (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 7 family [H]

Homologues:

Organism=Escherichia coli, GI1790004, Length=239, Percent_Identity=28.4518828451883, Blast_Score=134, Evalue=7e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018389
- InterPro:   IPR004682 [H]

Pfam domain/function: PF03480 SBP_bac_7 [H]

EC number: NA

Molecular weight: Translated: 39687; Mature: 39687

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSLLTCLSLMVLGIGTALFIGFHDRFSTEEPYYDDEQEGLKDQIVFKFSHVVAENTPKG
CHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCC
RAANKFADLVYQKSGGTIKVEVFPNGSLYSDNEEINALQNGDVQFIAPSTSKLGSLSPEW
CHHHHHHHHHEECCCCEEEEEEECCCCEECCCHHHHHCCCCCEEEECCCCHHHCCCCCCC
GVLDLPYAFTNYKAVQEGLNGKIGTRLFASLEKHHLKGLAYWTNGFKQLTSNKGPIFTPD
CEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC
DLKGQALRIMPSSVIEDQYRLLGAHPRQDSFNSTFQLLESNLVDGEENTISNIYSKKFYN
CCCCCEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
VQDYLTISNHGYLGYAVMTDEHFWNSQTEKTRTILTEAMRETTEWNEASAEKMNKDQLEE
HHHEEEECCCCEEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHH
IKKNSSIHIHVLSKAEKNTWMKRLDPIYGQYEQVIGRGLVQDLLSLRREP
HHCCCCEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKSLLTCLSLMVLGIGTALFIGFHDRFSTEEPYYDDEQEGLKDQIVFKFSHVVAENTPKG
CHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCC
RAANKFADLVYQKSGGTIKVEVFPNGSLYSDNEEINALQNGDVQFIAPSTSKLGSLSPEW
CHHHHHHHHHEECCCCEEEEEEECCCCEECCCHHHHHCCCCCEEEECCCCHHHCCCCCCC
GVLDLPYAFTNYKAVQEGLNGKIGTRLFASLEKHHLKGLAYWTNGFKQLTSNKGPIFTPD
CEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC
DLKGQALRIMPSSVIEDQYRLLGAHPRQDSFNSTFQLLESNLVDGEENTISNIYSKKFYN
CCCCCEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCC
VQDYLTISNHGYLGYAVMTDEHFWNSQTEKTRTILTEAMRETTEWNEASAEKMNKDQLEE
HHHEEEECCCCEEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHH
IKKNSSIHIHVLSKAEKNTWMKRLDPIYGQYEQVIGRGLVQDLLSLRREP
HHCCCCEEEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 10708364 [H]