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The map label for this gene is ydbD [H]

Identifier: 154684945

GI number: 154684945

Start: 470679

End: 471500

Strand: Reverse

Name: ydbD [H]

Synonym: RBAM_004760

Alternate gene names: 154684945

Gene position: 471500-470679 (Counterclockwise)

Preceding gene: 154684946

Following gene: 154684940

Centisome position: 12.03

GC content: 50.49

Gene sequence:

>822_bases
ATGTTTACACATACGAAAAAACTGCAGCATCCGGCTAAACCGGATCGTCCTGACCCGCTGTTCGCCAAAAAGATGCAGGA
AATTTTAGGGGGACAATACGGGGAAATATCCGTCGCCATGCAATATTTGTTCCAAGGATGGAATACACGGGGCAATGAAA
AATATAAGGATCTTCTGATGGATACCGCGACGGAAGAAATCGGCCATGTCGAAATGATCGCGACGATGATTGCGAGACTG
TTAGAAGACGCCCCGCTGGCAGAGCAGGAAAAAGCGGCTGATGATCCGGTCATCGGGTCCATTTTAGGCGGCATGAATCC
GCATCATGCGATTGTCTCAGGACTCGGCGCAATGCCGGAGAGCAGCACGGGCGTTCCGTGGAGCGCAGGCTATATCGTCG
CAAGCGGAAACCTTCTGGCAGACTTCCGCGCCAATCTGAACGCCGAATCACAAGGAAGGCTTCAAGTCGCACGCCTGTAT
GAAATGACCGATGATAAAGGCGTGAAAGATATGCTCAGCTTTTTATTGGCCCGCGATACCATGCATCAAAACCAATGGCT
TGCGGCCATTAAAGAATTAGAAGAACAGGAAGGTCCGATCGTTCCTTCCACATTCCCGAAGGCACTGGAAAAACAGTCAT
TCTCCCATAAGCTTATTCATTTCTCAGATGGCGGAGAAAGCGCTGAACAAAATTGGCTGAAGGAAACAGCGCCGGACGGA
GAACCATTTGAATACGAAAAGGAACCGAAAGCGCACGGCGAAATAGCTAAGCTGGATCCTGTCCCGCCGTATGTCCATAA
CACGCTTCCCGGACGCGAGTAA

Upstream 100 bases:

>100_bases
CGCCGCGAGCCTTAGCAGGACCAATACGCCCATCTCCGTTTCATCCCTTTTCCCGCCGGGGAAGTAAATAGGGACAGAGC
AAAGAAAAGGAGATGGAGAC

Downstream 100 bases:

>100_bases
AGACACAAGCCCAAAACAAACTGTTTTGGGCTTTCATTATGCCTTCTGAACCGTCCAGTCCGGTTCGTATCGGATGTCCG
GGTGATGTAACAGCTCGTGA

Product: YdbD

Products: NA

Alternate protein names: General stress protein 80; GSP80 [H]

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MFTHTKKLQHPAKPDRPDPLFAKKMQEILGGQYGEISVAMQYLFQGWNTRGNEKYKDLLMDTATEEIGHVEMIATMIARL
LEDAPLAEQEKAADDPVIGSILGGMNPHHAIVSGLGAMPESSTGVPWSAGYIVASGNLLADFRANLNAESQGRLQVARLY
EMTDDKGVKDMLSFLLARDTMHQNQWLAAIKELEEQEGPIVPSTFPKALEKQSFSHKLIHFSDGGESAEQNWLKETAPDG
EPFEYEKEPKAHGEIAKLDPVPPYVHNTLPGRE

Sequences:

>Translated_273_residues
MFTHTKKLQHPAKPDRPDPLFAKKMQEILGGQYGEISVAMQYLFQGWNTRGNEKYKDLLMDTATEEIGHVEMIATMIARL
LEDAPLAEQEKAADDPVIGSILGGMNPHHAIVSGLGAMPESSTGVPWSAGYIVASGNLLADFRANLNAESQGRLQVARLY
EMTDDKGVKDMLSFLLARDTMHQNQWLAAIKELEEQEGPIVPSTFPKALEKQSFSHKLIHFSDGGESAEQNWLKETAPDG
EPFEYEKEPKAHGEIAKLDPVPPYVHNTLPGRE
>Mature_273_residues
MFTHTKKLQHPAKPDRPDPLFAKKMQEILGGQYGEISVAMQYLFQGWNTRGNEKYKDLLMDTATEEIGHVEMIATMIARL
LEDAPLAEQEKAADDPVIGSILGGMNPHHAIVSGLGAMPESSTGVPWSAGYIVASGNLLADFRANLNAESQGRLQVARLY
EMTDDKGVKDMLSFLLARDTMHQNQWLAAIKELEEQEGPIVPSTFPKALEKQSFSHKLIHFSDGGESAEQNWLKETAPDG
EPFEYEKEPKAHGEIAKLDPVPPYVHNTLPGRE

Specific function: Unknown

COG id: COG3546

COG function: function code P; Mn-containing catalase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the manganese catalase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007760
- InterPro:   IPR012347
- InterPro:   IPR009078 [H]

Pfam domain/function: PF05067 Mn_catalase [H]

EC number: =1.11.1.6 [H]

Molecular weight: Translated: 30262; Mature: 30262

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTHTKKLQHPAKPDRPDPLFAKKMQEILGGQYGEISVAMQYLFQGWNTRGNEKYKDLLM
CCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
DTATEEIGHVEMIATMIARLLEDAPLAEQEKAADDPVIGSILGGMNPHHAIVSGLGAMPE
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHCCCCHHHHHHHHHCCCCC
SSTGVPWSAGYIVASGNLLADFRANLNAESQGRLQVARLYEMTDDKGVKDMLSFLLARDT
CCCCCCCCCCEEEECCCEEEHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
MHQNQWLAAIKELEEQEGPIVPSTFPKALEKQSFSHKLIHFSDGGESAEQNWLKETAPDG
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCC
EPFEYEKEPKAHGEIAKLDPVPPYVHNTLPGRE
CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC
>Mature Secondary Structure
MFTHTKKLQHPAKPDRPDPLFAKKMQEILGGQYGEISVAMQYLFQGWNTRGNEKYKDLLM
CCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHH
DTATEEIGHVEMIATMIARLLEDAPLAEQEKAADDPVIGSILGGMNPHHAIVSGLGAMPE
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHCCCCHHHHHHHHHCCCCC
SSTGVPWSAGYIVASGNLLADFRANLNAESQGRLQVARLYEMTDDKGVKDMLSFLLARDT
CCCCCCCCCCEEEECCCEEEHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
MHQNQWLAAIKELEEQEGPIVPSTFPKALEKQSFSHKLIHFSDGGESAEQNWLKETAPDG
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCC
EPFEYEKEPKAHGEIAKLDPVPPYVHNTLPGRE
CCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9298659 [H]