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The map label for this gene is yclF [H]

Identifier: 154684853

GI number: 154684853

Start: 380790

End: 382268

Strand: Reverse

Name: yclF [H]

Synonym: RBAM_003840

Alternate gene names: 154684853

Gene position: 382268-380790 (Counterclockwise)

Preceding gene: 154684855

Following gene: 154684848

Centisome position: 9.76

GC content: 50.1

Gene sequence:

>1479_bases
GTGGCATCTATTGATAAGGACTCTATAACAGAAACTGTGCCGCAACGAGGCTTTTTCGGTCATCCCCGCGGCTTGTTCAC
ACTGTTTTTCACCGAATTTTGGGAGCGTTTCTCCTACTATGGTATGAGAGCCATATTGCTTTACTATTTATACACGGAAG
TCGCTCATGGCGGTCTCGGCTTTGATAAAACGACCGCAGTTGCCATCATGTCCATATACGGGTCTCTCGTATACATGTCG
AGCGTCATCGGCGGATGGCTGGCCGACCGGGTATTCGGCACGGCAAACACCGTATTTTACGGCGGAATTTTAATTATGTT
CGGGCACATCGCTCTTGCCTTCCCTGGCAGCACGGCGGCGTTTTTTACCAGCATGGCTCTGATCATTATCGGAACCGGCC
TGCTTAAACCAAACGTATCCAGCGTTGTCGGAGATTTATATACGAAGGAAGACGAGCGCCGCGACTCAGGTTTCAGCATC
TTTTACATGGGGATCAACCTCGGCGGATTGCTTGCGCCGCTAATTGTCGGAACACTCGGACAGAAGTACAACTACCACTT
AGGCTTCGGATGCGCCGCGGCCGGTATGTTCCTCGGACTGATTGTTTTCGCTCTTACGAGAAAGAAATACCTCGGCAAAG
CAGGCTCCAATGTACCGAATCCGATTTCTAAATCATCAGTGATCGGCACGGGAATCGGAGTGGTCATCGCAGCAGCCGTT
ATCATCGTTCTGATTCAAACCGGCTGGCTGACGATCCAGCGTGTGATTGATACCGTCAGTATCCTCGGCATTGTCATTCC
GGTTATTTACTTTATCGTGATGTTCACGAGCAAAAAAGCGACGAAAACGGAAAAATCACGGCTTGCGGCTTATGTTCCGC
TGTTTGTTGCAGCGGCAATGTTCTGGGCGATTCAGGAGCAGGGCGCGACGATTCTTGCTTTATATGCGGATCAGCGCACG
AGACTTTCCTTTGCGGGCATGCATCTTGAGTCTTCATGGTTCCAGTCTCTGAACCCGTTATTCATCGTTATTTTCGCGCC
GGTGTTCGCCTGGATCTGGATGAAGCTTGGCAAACGCCAGCCTTCAACACCGATTAAATTCGCGATCGGCATTATCCTTG
CCGGATTATCATTTTTAGTCATGGTGCTTCCGGTTATGGGCGGGAGCGGCGAGCTTGTGAGCCCGCTTTGGCTTGTGCTC
AGCTTCCTTTTGGTTGTGCTTGGTGAGCTTTGCCTTTCACCGGTCGGTTTATCCGTCACAACGAAACTTGCGCCTGCCGC
TTTCTCAGCGCAGACGATGAGCATGTGGTTTTTAACAAACGCCTGCGGTCAAGCCCTGAACGCAAAAGTAGTCGGTTTGT
TTGATAAGATTTCTGAAGCGGCCTACTTCGGCTCAATCGGTCTTGTTTCGATCATTCTCGGTATTATTTTGATTCTTCTG
TCTCCCGTCATTAAACGGGCGATGAAAGGCGTACAATAA

Upstream 100 bases:

>100_bases
ATTCTGGAATTTTTTGAATTCAGTATAAATTATATTGACACAAGTATTATATAAGAATATGATTTTTGTAATACACTTTT
TTAAGAAAGGGTTGGCTCAG

Downstream 100 bases:

>100_bases
TAGAAAAGCCTGCGGAATCGTCCGCAGGCTTTTTTGATGCGTCTATCGTTTTAACTCCTCAAGTGTTTCTCTCCATCTCT
TCAAGACATCTTCCGGTTCG

Product: YclF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 492; Mature: 491

Protein sequence:

>492_residues
MASIDKDSITETVPQRGFFGHPRGLFTLFFTEFWERFSYYGMRAILLYYLYTEVAHGGLGFDKTTAVAIMSIYGSLVYMS
SVIGGWLADRVFGTANTVFYGGILIMFGHIALAFPGSTAAFFTSMALIIIGTGLLKPNVSSVVGDLYTKEDERRDSGFSI
FYMGINLGGLLAPLIVGTLGQKYNYHLGFGCAAAGMFLGLIVFALTRKKYLGKAGSNVPNPISKSSVIGTGIGVVIAAAV
IIVLIQTGWLTIQRVIDTVSILGIVIPVIYFIVMFTSKKATKTEKSRLAAYVPLFVAAAMFWAIQEQGATILALYADQRT
RLSFAGMHLESSWFQSLNPLFIVIFAPVFAWIWMKLGKRQPSTPIKFAIGIILAGLSFLVMVLPVMGGSGELVSPLWLVL
SFLLVVLGELCLSPVGLSVTTKLAPAAFSAQTMSMWFLTNACGQALNAKVVGLFDKISEAAYFGSIGLVSIILGIILILL
SPVIKRAMKGVQ

Sequences:

>Translated_492_residues
MASIDKDSITETVPQRGFFGHPRGLFTLFFTEFWERFSYYGMRAILLYYLYTEVAHGGLGFDKTTAVAIMSIYGSLVYMS
SVIGGWLADRVFGTANTVFYGGILIMFGHIALAFPGSTAAFFTSMALIIIGTGLLKPNVSSVVGDLYTKEDERRDSGFSI
FYMGINLGGLLAPLIVGTLGQKYNYHLGFGCAAAGMFLGLIVFALTRKKYLGKAGSNVPNPISKSSVIGTGIGVVIAAAV
IIVLIQTGWLTIQRVIDTVSILGIVIPVIYFIVMFTSKKATKTEKSRLAAYVPLFVAAAMFWAIQEQGATILALYADQRT
RLSFAGMHLESSWFQSLNPLFIVIFAPVFAWIWMKLGKRQPSTPIKFAIGIILAGLSFLVMVLPVMGGSGELVSPLWLVL
SFLLVVLGELCLSPVGLSVTTKLAPAAFSAQTMSMWFLTNACGQALNAKVVGLFDKISEAAYFGSIGLVSIILGIILILL
SPVIKRAMKGVQ
>Mature_491_residues
ASIDKDSITETVPQRGFFGHPRGLFTLFFTEFWERFSYYGMRAILLYYLYTEVAHGGLGFDKTTAVAIMSIYGSLVYMSS
VIGGWLADRVFGTANTVFYGGILIMFGHIALAFPGSTAAFFTSMALIIIGTGLLKPNVSSVVGDLYTKEDERRDSGFSIF
YMGINLGGLLAPLIVGTLGQKYNYHLGFGCAAAGMFLGLIVFALTRKKYLGKAGSNVPNPISKSSVIGTGIGVVIAAAVI
IVLIQTGWLTIQRVIDTVSILGIVIPVIYFIVMFTSKKATKTEKSRLAAYVPLFVAAAMFWAIQEQGATILALYADQRTR
LSFAGMHLESSWFQSLNPLFIVIFAPVFAWIWMKLGKRQPSTPIKFAIGIILAGLSFLVMVLPVMGGSGELVSPLWLVLS
FLLVVLGELCLSPVGLSVTTKLAPAAFSAQTMSMWFLTNACGQALNAKVVGLFDKISEAAYFGSIGLVSIILGIILILLS
PVIKRAMKGVQ

Specific function: Unknown

COG id: COG3104

COG function: function code E; Dipeptide/tripeptide permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTR2/POT transporter (TC 2.A.17) family [H]

Homologues:

Organism=Homo sapiens, GI4827008, Length=404, Percent_Identity=27.970297029703, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI226371746, Length=377, Percent_Identity=28.1167108753316, Blast_Score=113, Evalue=5e-25,
Organism=Homo sapiens, GI226371748, Length=368, Percent_Identity=27.1739130434783, Blast_Score=99, Evalue=7e-21,
Organism=Escherichia coli, GI1787922, Length=499, Percent_Identity=30.2605210420842, Blast_Score=213, Evalue=2e-56,
Organism=Escherichia coli, GI1789911, Length=496, Percent_Identity=27.8225806451613, Blast_Score=195, Evalue=4e-51,
Organism=Escherichia coli, GI1790572, Length=415, Percent_Identity=29.6385542168675, Blast_Score=192, Evalue=4e-50,
Organism=Escherichia coli, GI1786927, Length=415, Percent_Identity=31.0843373493976, Blast_Score=189, Evalue=3e-49,
Organism=Caenorhabditis elegans, GI71987453, Length=379, Percent_Identity=27.7044854881267, Blast_Score=108, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17569141, Length=411, Percent_Identity=26.5206812652068, Blast_Score=92, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17541704, Length=197, Percent_Identity=31.4720812182741, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI28571102, Length=407, Percent_Identity=29.2383292383292, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI28571100, Length=407, Percent_Identity=29.2383292383292, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI28571098, Length=407, Percent_Identity=29.2383292383292, Blast_Score=113, Evalue=3e-25,
Organism=Drosophila melanogaster, GI24639583, Length=376, Percent_Identity=27.3936170212766, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24639585, Length=363, Percent_Identity=27.5482093663912, Blast_Score=106, Evalue=4e-23,
Organism=Drosophila melanogaster, GI24639581, Length=363, Percent_Identity=27.5482093663912, Blast_Score=105, Evalue=7e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR016196
- InterPro:   IPR000109
- InterPro:   IPR005279
- InterPro:   IPR018456 [H]

Pfam domain/function: PF00854 PTR2 [H]

EC number: NA

Molecular weight: Translated: 53129; Mature: 52998

Theoretical pI: Translated: 9.91; Mature: 9.91

Prosite motif: PS50850 MFS ; PS01022 PTR2_1 ; PS01023 PTR2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASIDKDSITETVPQRGFFGHPRGLFTLFFTEFWERFSYYGMRAILLYYLYTEVAHGGLG
CCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
FDKTTAVAIMSIYGSLVYMSSVIGGWLADRVFGTANTVFYGGILIMFGHIALAFPGSTAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHH
FFTSMALIIIGTGLLKPNVSSVVGDLYTKEDERRDSGFSIFYMGINLGGLLAPLIVGTLG
HHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHC
QKYNYHLGFGCAAAGMFLGLIVFALTRKKYLGKAGSNVPNPISKSSVIGTGIGVVIAAAV
CCCCEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
IIVLIQTGWLTIQRVIDTVSILGIVIPVIYFIVMFTSKKATKTEKSRLAAYVPLFVAAAM
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FWAIQEQGATILALYADQRTRLSFAGMHLESSWFQSLNPLFIVIFAPVFAWIWMKLGKRQ
HHHHHHCCCEEEEEECCCCHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC
PSTPIKFAIGIILAGLSFLVMVLPVMGGSGELVSPLWLVLSFLLVVLGELCLSPVGLSVT
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
TKLAPAAFSAQTMSMWFLTNACGQALNAKVVGLFDKISEAAYFGSIGLVSIILGIILILL
HHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SPVIKRAMKGVQ
HHHHHHHHCCCC
>Mature Secondary Structure 
ASIDKDSITETVPQRGFFGHPRGLFTLFFTEFWERFSYYGMRAILLYYLYTEVAHGGLG
CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC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HHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]