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The map label for this gene is lci

Identifier: 154684806

GI number: 154684806

Start: 310858

End: 311142

Strand: Reverse

Name: lci

Synonym: RBAM_003370

Alternate gene names: NA

Gene position: 311142-310858 (Counterclockwise)

Preceding gene: 154684807

Following gene: 154684803

Centisome position: 7.94

GC content: 44.56

Gene sequence:

>285_bases
ATGAAATTCAAAAAAGTGTTAACCGGTTCTGCGCTGTCTCTTGCCTTACTGATGTCTGCCGCTCCTGCCTTTGCCGCATC
ACCAACAGCATCCGCATCCGCGGAAAATAGCCCAATCTCAACGAAAGCAGATGCCGGCATTAATGCCATCAAACTCGTTC
AAAGCCCTAACGGCAACTTCGCTGCTTCTTTCGTTTTAGATGGAACAACGTGGATTTTCAAAAGCAAATACTATGACAGC
AGCAAAGGGTATTGGGTAGGGATTTATGAAAGTGTAGATAAATAA

Upstream 100 bases:

>100_bases
AAATTAAGAAAAAAATTTTAGAAATACAGAAGGAATTTTATGGATAATAATCTAATTATTAACACTGTAACACATTTCAT
TTGAAAAGGGAGTGCTCGAA

Downstream 100 bases:

>100_bases
AAATGAGATAAACAAAAAACCTCCCTTTCAAAAGGGAGGTTTTTTTCATTCTATTTCCACCAATCATCAAACATTGATGC
CGGCACCTGGCGCTTATGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MKFKKVLTGSALSLALLMSAAPAFAASPTASASAENSPISTKADAGINAIKLVQSPNGNFAASFVLDGTTWIFKSKYYDS
SKGYWVGIYESVDK

Sequences:

>Translated_94_residues
MKFKKVLTGSALSLALLMSAAPAFAASPTASASAENSPISTKADAGINAIKLVQSPNGNFAASFVLDGTTWIFKSKYYDS
SKGYWVGIYESVDK
>Mature_94_residues
MKFKKVLTGSALSLALLMSAAPAFAASPTASASAENSPISTKADAGINAIKLVQSPNGNFAASFVLDGTTWIFKSKYYDS
SKGYWVGIYESVDK

Specific function: Has antibacterial activity against X.oryzae pv oryzae and R.solanacearum, but not E.coli or P.carotovorum subsp carotovorum. May bind DNA or mRNA [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020976 [H]

Pfam domain/function: PF12197 lci [H]

EC number: NA

Molecular weight: Translated: 9873; Mature: 9873

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKKVLTGSALSLALLMSAAPAFAASPTASASAENSPISTKADAGINAIKLVQSPNGNF
CCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCE
AASFVLDGTTWIFKSKYYDSSKGYWVGIYESVDK
EEEEEECCEEEEEEECCEECCCCEEEEEECCCCC
>Mature Secondary Structure
MKFKKVLTGSALSLALLMSAAPAFAASPTASASAENSPISTKADAGINAIKLVQSPNGNF
CCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCE
AASFVLDGTTWIFKSKYYDSSKGYWVGIYESVDK
EEEEEECCEEEEEEECCEECCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA