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The map label for this gene is ybgF [H]

Identifier: 154684746

GI number: 154684746

Start: 249711

End: 251114

Strand: Reverse

Name: ybgF [H]

Synonym: RBAM_002770

Alternate gene names: 154684746

Gene position: 251114-249711 (Counterclockwise)

Preceding gene: 154684747

Following gene: 154684744

Centisome position: 6.41

GC content: 51.28

Gene sequence:

>1404_bases
ATGAACAACAAGAACGAGACGAATTTTCAGAGAAGTATGAAAAGCAGACACCTCTTTATGCTATCACTTGGAGGTGTGAT
CGGAACGGGGCTGTTTTTAAGCTCTGGGTATACCATTCATCAGGCGGGTCCGGCGGGCACCATTTTCGCTTACCTTTTGG
GCGCGGGCATCGTCTATCTTGTCATGCTTTGCCTTGGTGAACTGTCAGTGGCCATGCCGGTGACGGGCGCATTCCACACC
TATGCGAAAACCTATATCGGGCCCGCGACGGGCTTTACGGTAGCATGGCTGTACTGGCTGACGTGGGCGGTGGCGCTGGG
CTCTGAATTCACGGCGGCCGGGCTTTTCATGCAGCGTTGGTTCCCGCATACTTCAGTTTGGATGTGGAGTGCGGTATTCG
CTCTTTTCATCTTTTTATTAAACGCCTTCTCCGTGAAATTTTTTGCTGAATCGGAGTTTTGGTTCTCAAGCATTAAAGTC
TTAGCCATCTTACTGTTTATTTTATTGGGCGGAGCGGCGATGTTCGGCATCGTCCCGATGAAAAGCGGTGAGGCCGCACC
TATGCTGTCGAACTTTACGGATGGCGGCAGCCTTTTTCCAAATGGCTTTTTCCCGATACTGATGACGATGCTTTCAGTAA
ACTTTGCTTTTTCAGGGACGGAATTGATCGGAATCGCCGCAGGGGAAAGCGCCGATCCGGAAAAAACCGTTCCGCGCGCC
ATTAAGACCACAGTCTGGCGGCTGGCGCTTTTCTTTATAGGAACGATTTTTGTGCTGTCAGGGATGGTCTCCATCAAGGA
AGCCGGTGTGATTGAAAGCCCGTTCGTCACGGTATTTGACAGAGTCGGCGTGCCTTATGCGGCCGATCTGATGAATTTCG
TCATTTTAACGGCGCTTCTGTCTGCGGCCAATTCAGGGCTGTACGCGTCATCACGTATGCTGTGGTCCCTGTCTAAAGAA
GGGGAGCTTCATCCCGCCTTTGCCAGGCTGACCTCTAAAGGCATTCCTTTTAACGCTCTGATCTTCAGTATGATCGGCGG
CATTCTGTCGTTGTTGTCAAGCGTATTTGCAGCGGATACAGTCTATCTTGTTCTCGTCTCCGTCTCAGGATTTGCGGTAG
TGGCTGTGTGGATGAGCATCGCCGCATCGCAATTTTTGTTCCGAAGACGGTTTCTTACAGAAGGGCACCAGCTTTCAGAC
TTGAAATACAGGACGCCGGGATATCCGGCCGTACCGATAGCGGCCTTTCTCCTGTGCCTCGCCTCCTGTATCGGCATCGC
TTTTGATCCGAACCAGGCCATCGCCCTTTATTGCGGAATTGCATTTATGGCCGTTTGCTACACCGCTTATTACTTGAAAA
ACCGGAAAAGCAGAGCCCGCGTGCAAGCCGTAAAATCCCAATAA

Upstream 100 bases:

>100_bases
TTTGTATATTCTATTCAAAAAGCCGGTTCGCCGGAATCTCGTGCCGTTCGCCGGCATGAGATTTTTTATTAGGACGGCCC
TCGCAGAAAGTTGGAAAACA

Downstream 100 bases:

>100_bases
CCAAAAAAAGAACCCTGCAGCGCAAGGGTTCTTTTTTCATTTATACTTCAACCACCCATCTGAACGAATCCCGCACCTTC
CCGACTTGGATGCCGGCAAT

Product: YbgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MNNKNETNFQRSMKSRHLFMLSLGGVIGTGLFLSSGYTIHQAGPAGTIFAYLLGAGIVYLVMLCLGELSVAMPVTGAFHT
YAKTYIGPATGFTVAWLYWLTWAVALGSEFTAAGLFMQRWFPHTSVWMWSAVFALFIFLLNAFSVKFFAESEFWFSSIKV
LAILLFILLGGAAMFGIVPMKSGEAAPMLSNFTDGGSLFPNGFFPILMTMLSVNFAFSGTELIGIAAGESADPEKTVPRA
IKTTVWRLALFFIGTIFVLSGMVSIKEAGVIESPFVTVFDRVGVPYAADLMNFVILTALLSAANSGLYASSRMLWSLSKE
GELHPAFARLTSKGIPFNALIFSMIGGILSLLSSVFAADTVYLVLVSVSGFAVVAVWMSIAASQFLFRRRFLTEGHQLSD
LKYRTPGYPAVPIAAFLLCLASCIGIAFDPNQAIALYCGIAFMAVCYTAYYLKNRKSRARVQAVKSQ

Sequences:

>Translated_467_residues
MNNKNETNFQRSMKSRHLFMLSLGGVIGTGLFLSSGYTIHQAGPAGTIFAYLLGAGIVYLVMLCLGELSVAMPVTGAFHT
YAKTYIGPATGFTVAWLYWLTWAVALGSEFTAAGLFMQRWFPHTSVWMWSAVFALFIFLLNAFSVKFFAESEFWFSSIKV
LAILLFILLGGAAMFGIVPMKSGEAAPMLSNFTDGGSLFPNGFFPILMTMLSVNFAFSGTELIGIAAGESADPEKTVPRA
IKTTVWRLALFFIGTIFVLSGMVSIKEAGVIESPFVTVFDRVGVPYAADLMNFVILTALLSAANSGLYASSRMLWSLSKE
GELHPAFARLTSKGIPFNALIFSMIGGILSLLSSVFAADTVYLVLVSVSGFAVVAVWMSIAASQFLFRRRFLTEGHQLSD
LKYRTPGYPAVPIAAFLLCLASCIGIAFDPNQAIALYCGIAFMAVCYTAYYLKNRKSRARVQAVKSQ
>Mature_467_residues
MNNKNETNFQRSMKSRHLFMLSLGGVIGTGLFLSSGYTIHQAGPAGTIFAYLLGAGIVYLVMLCLGELSVAMPVTGAFHT
YAKTYIGPATGFTVAWLYWLTWAVALGSEFTAAGLFMQRWFPHTSVWMWSAVFALFIFLLNAFSVKFFAESEFWFSSIKV
LAILLFILLGGAAMFGIVPMKSGEAAPMLSNFTDGGSLFPNGFFPILMTMLSVNFAFSGTELIGIAAGESADPEKTVPRA
IKTTVWRLALFFIGTIFVLSGMVSIKEAGVIESPFVTVFDRVGVPYAADLMNFVILTALLSAANSGLYASSRMLWSLSKE
GELHPAFARLTSKGIPFNALIFSMIGGILSLLSSVFAADTVYLVLVSVSGFAVVAVWMSIAASQFLFRRRFLTEGHQLSD
LKYRTPGYPAVPIAAFLLCLASCIGIAFDPNQAIALYCGIAFMAVCYTAYYLKNRKSRARVQAVKSQ

Specific function: Transporter For The Intake Of S-Methylmethionine. [C]

COG id: COG0833

COG function: function code E; Amino acid transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the amino acid-polyamine-organocation (APC) superfamily [H]

Homologues:

Organism=Homo sapiens, GI33286428, Length=348, Percent_Identity=25.2873563218391, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI258645169, Length=386, Percent_Identity=21.7616580310881, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI71999149, Length=340, Percent_Identity=26.1764705882353, Blast_Score=67, Evalue=3e-11,
Organism=Homo sapiens, GI258614005, Length=367, Percent_Identity=21.5258855585831, Blast_Score=67, Evalue=5e-11,
Organism=Homo sapiens, GI258614003, Length=367, Percent_Identity=21.5258855585831, Blast_Score=67, Evalue=5e-11,
Organism=Escherichia coli, GI87081708, Length=459, Percent_Identity=61.8736383442266, Blast_Score=589, Evalue=1e-169,
Organism=Escherichia coli, GI1788480, Length=472, Percent_Identity=41.5254237288136, Blast_Score=355, Evalue=3e-99,
Organism=Escherichia coli, GI1786602, Length=459, Percent_Identity=35.0762527233115, Blast_Score=270, Evalue=2e-73,
Organism=Escherichia coli, GI1786302, Length=461, Percent_Identity=33.8394793926247, Blast_Score=268, Evalue=5e-73,
Organism=Escherichia coli, GI48994972, Length=466, Percent_Identity=33.6909871244635, Blast_Score=253, Evalue=2e-68,
Organism=Escherichia coli, GI1786789, Length=422, Percent_Identity=35.781990521327, Blast_Score=253, Evalue=3e-68,
Organism=Escherichia coli, GI87081915, Length=436, Percent_Identity=33.7155963302752, Blast_Score=252, Evalue=3e-68,
Organism=Escherichia coli, GI1789017, Length=398, Percent_Identity=36.1809045226131, Blast_Score=249, Evalue=2e-67,
Organism=Escherichia coli, GI1790653, Length=406, Percent_Identity=34.7290640394089, Blast_Score=228, Evalue=5e-61,
Organism=Caenorhabditis elegans, GI17540018, Length=462, Percent_Identity=22.9437229437229, Blast_Score=65, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6320772, Length=420, Percent_Identity=32.6190476190476, Blast_Score=227, Evalue=2e-60,
Organism=Saccharomyces cerevisiae, GI6324061, Length=423, Percent_Identity=32.1513002364066, Blast_Score=227, Evalue=3e-60,
Organism=Saccharomyces cerevisiae, GI6324990, Length=481, Percent_Identity=29.3139293139293, Blast_Score=197, Evalue=3e-51,
Organism=Saccharomyces cerevisiae, GI6320717, Length=423, Percent_Identity=28.8416075650118, Blast_Score=196, Evalue=5e-51,
Organism=Saccharomyces cerevisiae, GI6324553, Length=405, Percent_Identity=31.6049382716049, Blast_Score=196, Evalue=7e-51,
Organism=Saccharomyces cerevisiae, GI6321629, Length=412, Percent_Identity=29.126213592233, Blast_Score=194, Evalue=2e-50,
Organism=Saccharomyces cerevisiae, GI6324059, Length=424, Percent_Identity=31.1320754716981, Blast_Score=187, Evalue=3e-48,
Organism=Saccharomyces cerevisiae, GI6322892, Length=416, Percent_Identity=30.2884615384615, Blast_Score=182, Evalue=9e-47,
Organism=Saccharomyces cerevisiae, GI6319542, Length=415, Percent_Identity=27.9518072289157, Blast_Score=179, Evalue=8e-46,
Organism=Saccharomyces cerevisiae, GI6319824, Length=414, Percent_Identity=27.536231884058, Blast_Score=177, Evalue=3e-45,
Organism=Saccharomyces cerevisiae, GI6322967, Length=408, Percent_Identity=30.3921568627451, Blast_Score=176, Evalue=7e-45,
Organism=Saccharomyces cerevisiae, GI6324924, Length=431, Percent_Identity=27.3781902552204, Blast_Score=175, Evalue=2e-44,
Organism=Saccharomyces cerevisiae, GI6319543, Length=442, Percent_Identity=27.8280542986425, Blast_Score=174, Evalue=2e-44,
Organism=Saccharomyces cerevisiae, GI6320251, Length=416, Percent_Identity=26.6826923076923, Blast_Score=172, Evalue=1e-43,
Organism=Saccharomyces cerevisiae, GI6324981, Length=408, Percent_Identity=32.1078431372549, Blast_Score=171, Evalue=2e-43,
Organism=Saccharomyces cerevisiae, GI6321053, Length=430, Percent_Identity=26.2790697674419, Blast_Score=165, Evalue=1e-41,
Organism=Saccharomyces cerevisiae, GI6319608, Length=434, Percent_Identity=25.3456221198157, Blast_Score=155, Evalue=2e-38,
Organism=Saccharomyces cerevisiae, GI6320364, Length=531, Percent_Identity=25.9887005649718, Blast_Score=127, Evalue=5e-30,
Organism=Drosophila melanogaster, GI45550968, Length=493, Percent_Identity=24.3407707910751, Blast_Score=79, Evalue=7e-15,
Organism=Drosophila melanogaster, GI19921172, Length=493, Percent_Identity=24.3407707910751, Blast_Score=79, Evalue=7e-15,
Organism=Drosophila melanogaster, GI221331183, Length=330, Percent_Identity=23.6363636363636, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI17647653, Length=330, Percent_Identity=23.6363636363636, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24664379, Length=330, Percent_Identity=23.6363636363636, Blast_Score=68, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24666159, Length=379, Percent_Identity=22.6912928759894, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221512776, Length=379, Percent_Identity=22.6912928759894, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004841
- InterPro:   IPR002293
- InterPro:   IPR004840 [H]

Pfam domain/function: PF00324 AA_permease [H]

EC number: NA

Molecular weight: Translated: 50724; Mature: 50724

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS00218 AMINO_ACID_PERMEASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKNETNFQRSMKSRHLFMLSLGGVIGTGLFLSSGYTIHQAGPAGTIFAYLLGAGIVYL
CCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHH
VMLCLGELSVAMPVTGAFHTYAKTYIGPATGFTVAWLYWLTWAVALGSEFTAAGLFMQRW
HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
FPHTSVWMWSAVFALFIFLLNAFSVKFFAESEFWFSSIKVLAILLFILLGGAAMFGIVPM
CCCHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHCCHHHHHEEEC
KSGEAAPMLSNFTDGGSLFPNGFFPILMTMLSVNFAFSGTELIGIAAGESADPEKTVPRA
CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCEECCCEEEEEECCCCCCCHHHHHHH
IKTTVWRLALFFIGTIFVLSGMVSIKEAGVIESPFVTVFDRVGVPYAADLMNFVILTALL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH
SAANSGLYASSRMLWSLSKEGELHPAFARLTSKGIPFNALIFSMIGGILSLLSSVFAADT
HHHCCCCCHHHHHHEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VYLVLVSVSGFAVVAVWMSIAASQFLFRRRFLTEGHQLSDLKYRTPGYPAVPIAAFLLCL
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
ASCIGIAFDPNQAIALYCGIAFMAVCYTAYYLKNRKSRARVQAVKSQ
HHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
>Mature Secondary Structure
MNNKNETNFQRSMKSRHLFMLSLGGVIGTGLFLSSGYTIHQAGPAGTIFAYLLGAGIVYL
CCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHH
VMLCLGELSVAMPVTGAFHTYAKTYIGPATGFTVAWLYWLTWAVALGSEFTAAGLFMQRW
HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
FPHTSVWMWSAVFALFIFLLNAFSVKFFAESEFWFSSIKVLAILLFILLGGAAMFGIVPM
CCCHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHCCHHHHHEEEC
KSGEAAPMLSNFTDGGSLFPNGFFPILMTMLSVNFAFSGTELIGIAAGESADPEKTVPRA
CCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHCEECCCEEEEEECCCCCCCHHHHHHH
IKTTVWRLALFFIGTIFVLSGMVSIKEAGVIESPFVTVFDRVGVPYAADLMNFVILTALL
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH
SAANSGLYASSRMLWSLSKEGELHPAFARLTSKGIPFNALIFSMIGGILSLLSSVFAADT
HHHCCCCCHHHHHHEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
VYLVLVSVSGFAVVAVWMSIAASQFLFRRRFLTEGHQLSDLKYRTPGYPAVPIAAFLLCL
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
ASCIGIAFDPNQAIALYCGIAFMAVCYTAYYLKNRKSRARVQAVKSQ
HHHHCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]