Click here to switch to the map view.

The map label for this gene is yxaC [H]

Identifier: 154684713

GI number: 154684713

Start: 216341

End: 217033

Strand: Reverse

Name: yxaC [H]

Synonym: RBAM_002440

Alternate gene names: 154684713

Gene position: 217033-216341 (Counterclockwise)

Preceding gene: 154684726

Following gene: 154684712

Centisome position: 5.54

GC content: 50.22

Gene sequence:

>693_bases
GTGCAGCAAGCATGTATCGCAATCCTTATAATTTTGTTCACGGCCGCCGCCTATCTGGCTATGGTGAAATTATATGTGCG
CTTTCCATATCCCTTTCTCATACCGGTTTTGACGACTACGATTTTCATTATCGCCGTGCTGCTTGTTTTTCATATTTCGT
ATAAAGACTATATGATCGGCGGCCAATGGATCAATTCACTGCTCGGACCCGCCGTGGTGGCTTTGGCATACCCGCTTTAT
AAGCAGCGCCGGGTGTTAATCAAGTATATGTTTCCGATCATCGGCGGCGTGTTGGCCGGTTTATTCTCCGGAATGGTCAG
CGGCCTGCTATTTGCAGAGCTGTTCGGCATCAGCCGGAGTTTGATTTTGTCAATTATCCCAAAATCAATTACGACGCCTG
TCGCGATACAGATTGCGTCCGGTATCGGCGGTGTCCCTTCCATGACAGTCGTGTTCGTCATGATCGCAGGGTTTTCCGGC
GTTATCTTAGGACCGCTGCTTCTCAAGTGGATCCGCATCCGCAGCTCACTCGGGAAAGGAATTGCATTCGGGAGCGCTTC
CCATGCGCTCGGCACCTCAAAAGCAATGGAGTACGGAGAATTAACAGTCTCCATGAGTTCTGTTTCCATGACGCTCTGCG
CCGTGTTAGGGTCGGTCTTCGGCCCCGTCGTAGCATGGATGTTTCAAATTTAA

Upstream 100 bases:

>100_bases
TTCTGATCATCGTGCTGAGCACCATCGTCACAATGATCGCCGCAGGGTACGCCAGCCAGCTGTTAGAGCACAAAGCCAAT
CAGAGAAAGGAGAAAAAGAA

Downstream 100 bases:

>100_bases
AGCTGACGGTTCTCCGTCAGCTTTTTTCATGTGCGGATCATCTCATTTCCTTCCATTATTATGTTTCATTTGTAAGAATA
ATGGTAAAGTAGAAAACAAG

Product: YxaC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MQQACIAILIILFTAAAYLAMVKLYVRFPYPFLIPVLTTTIFIIAVLLVFHISYKDYMIGGQWINSLLGPAVVALAYPLY
KQRRVLIKYMFPIIGGVLAGLFSGMVSGLLFAELFGISRSLILSIIPKSITTPVAIQIASGIGGVPSMTVVFVMIAGFSG
VILGPLLLKWIRIRSSLGKGIAFGSASHALGTSKAMEYGELTVSMSSVSMTLCAVLGSVFGPVVAWMFQI

Sequences:

>Translated_230_residues
MQQACIAILIILFTAAAYLAMVKLYVRFPYPFLIPVLTTTIFIIAVLLVFHISYKDYMIGGQWINSLLGPAVVALAYPLY
KQRRVLIKYMFPIIGGVLAGLFSGMVSGLLFAELFGISRSLILSIIPKSITTPVAIQIASGIGGVPSMTVVFVMIAGFSG
VILGPLLLKWIRIRSSLGKGIAFGSASHALGTSKAMEYGELTVSMSSVSMTLCAVLGSVFGPVVAWMFQI
>Mature_230_residues
MQQACIAILIILFTAAAYLAMVKLYVRFPYPFLIPVLTTTIFIIAVLLVFHISYKDYMIGGQWINSLLGPAVVALAYPLY
KQRRVLIKYMFPIIGGVLAGLFSGMVSGLLFAELFGISRSLILSIIPKSITTPVAIQIASGIGGVPSMTVVFVMIAGFSG
VILGPLLLKWIRIRSSLGKGIAFGSASHALGTSKAMEYGELTVSMSSVSMTLCAVLGSVFGPVVAWMFQI

Specific function: Unknown

COG id: COG1346

COG function: function code M; Putative effector of murein hydrolase

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yohK (E.coli)/ywbG (IPA-22R) (B.subtilis) family [H]

Homologues:

Organism=Escherichia coli, GI1788464, Length=205, Percent_Identity=39.5121951219512, Blast_Score=145, Evalue=2e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007300 [H]

Pfam domain/function: PF04172 LrgB [H]

EC number: NA

Molecular weight: Translated: 24664; Mature: 24664

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQACIAILIILFTAAAYLAMVKLYVRFPYPFLIPVLTTTIFIIAVLLVFHISYKDYMIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GQWINSLLGPAVVALAYPLYKQRRVLIKYMFPIIGGVLAGLFSGMVSGLLFAELFGISRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LILSIIPKSITTPVAIQIASGIGGVPSMTVVFVMIAGFSGVILGPLLLKWIRIRSSLGKG
HHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
IAFGSASHALGTSKAMEYGELTVSMSSVSMTLCAVLGSVFGPVVAWMFQI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQQACIAILIILFTAAAYLAMVKLYVRFPYPFLIPVLTTTIFIIAVLLVFHISYKDYMIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GQWINSLLGPAVVALAYPLYKQRRVLIKYMFPIIGGVLAGLFSGMVSGLLFAELFGISRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LILSIIPKSITTPVAIQIASGIGGVPSMTVVFVMIAGFSGVILGPLLLKWIRIRSSLGKG
HHHHHHHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
IAFGSASHALGTSKAMEYGELTVSMSSVSMTLCAVLGSVFGPVVAWMFQI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7584049; 9384377; 10568751 [H]