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The map label for this gene is ybbB [H]

Identifier: 154684687

GI number: 154684687

Start: 188155

End: 189750

Strand: Reverse

Name: ybbB [H]

Synonym: RBAM_002130

Alternate gene names: 154684687

Gene position: 189750-188155 (Counterclockwise)

Preceding gene: 154684688

Following gene: 154684686

Centisome position: 4.84

GC content: 45.18

Gene sequence:

>1596_bases
ATGAAAAACACATTATTCTTTCAGCCCATTGATATCATCTCCGTAAAAAAAACAGCCGACCTTCTGTCAGAGCATCAGCT
CACTGATTCCCCCGTATTGATCTTTCATGTGAAAGGCGAGGGACAAATTGATATCGGAACAGACAGCTTTCCGCTGCAGA
AGGAAACGCTCTACATCTGTCCTTGTGATGAGACATTCAATATTGCCCCTATACCGTCAGGCGGCATCCATTTGTATATC
GTCAGACTCCGTGTTTTCTCCTATTCATCAGATAATGAAGCGATGCTTCCGGATAATGGGGAAGACATCTTCCACGGACT
TCAGCAAATGAATTTACAAACGGTTGATCATTTGACAAGCCGGCTTCAGTCACTTTCTGAAAACGTGCGATCGGCGGATG
CATTGCAGAAAATGAAATATACAGCCGACTTTCAGCAGCTGATGTACGATCTTTATGCCGCAAAAGTATGCCATCAAAAT
AATACGAAAGCGGCGATCGAACAGACAAAACAATTCATACATACTCAGTCCGACACAAAAATCACGCTCACCCAGCTCGC
TCATATGGCGGGAATCAGTCCCAAGCATTACAGTGAAACCTTTAAAAAACTATATGGGCAGAGCGTAACTGAATATATCA
CAGACATCCGCATAACCAATGCGAAAAAACTGATGGCCAAGGCAAACTGCAAACTGCGGGAAATCGCTCATCAAATCGGC
TACCAAGACGAATTTTATTTCAGCCGCATCTTTAAAAAACATACCGGCAGCTCACCTACAAGCTATATGAAAAAAAGGCG
CACAAAAATGGCCGCGTACGGAAAAGAAACGATGGGGCATCTGATTCCTCTGCATCACGTGCCTTACGCTGCGGCGCTGC
ACCCGAAATGGACGGCCTATTATTACAAACAATTCTCTTCCGATATTCCGGTTCACCTGAGTGCTTACCGCTATAATGCA
AATTGGGAAGAGAACCTGCACACGCTGTCCCAAGCTGCCCCGGACATCATTTTCAGTCTTGATTCTGTCAGTGAAGAAGA
AAAACAGCGCCTGAATGACATCACTGACGTTTTTTACCTTCCGGCTCAAGAGAATTGGAGAGACCAGTTTCTTCGCACAG
CCGCATATTTGAATGAAGAGCAGGAAGCTCGGCACTGGCTTAAAGCTTATCAAAGTCTCGCCCATTCAGCGAAAGATGCT
CTTAAACACGTGCGGCATCAGCGGTTCTTATTTGTCCGTGTATATAAAGAAAATATGTACATCGCCCATAACAACAGTAT
TGAGGATGTCTTCTTCGGTGATTTAGGCTTTGCCTCCGCAAAACCGGAATCTTTTGCTCCTGACGAAAAGATTTCCTTGG
ACATGCTGGCGGATTGCCAGGCTGACTGCATCATGCTTTTCACTTGTAAAGAACCGGAAACGCTTCGTTATTTTCAGCGG
ATTCAGCAGACCGGGATATGGCAGAACCTTAGAGCCGTCAGCAATAAACGCGTGTTTCCCATATCATCTGACCCGTGGAT
TGAATATTCTCCAAGCGGACATCAGCGGATGATCGAGCAAAGCATTTCCATTTTATCCGAAGATCGTCCATGGTAA

Upstream 100 bases:

>100_bases
TCACATTTCCGCTTTTTATAGGAAAACATTCATTTATTTGGTACAATTTAAATGATAACAGTTATCATTTAAATGAATGT
TTCCTAAAAGGTGGTTTCTC

Downstream 100 bases:

>100_bases
TGCCGGAAATTATCCATGGTCTTATCCCTGTTCATTCTCTATAATTCCAATTGATAATAGTTATCAATTGAACAGGAGGA
ACAATAGATGAAGAAATTGG

Product: YbbB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 531; Mature: 531

Protein sequence:

>531_residues
MKNTLFFQPIDIISVKKTADLLSEHQLTDSPVLIFHVKGEGQIDIGTDSFPLQKETLYICPCDETFNIAPIPSGGIHLYI
VRLRVFSYSSDNEAMLPDNGEDIFHGLQQMNLQTVDHLTSRLQSLSENVRSADALQKMKYTADFQQLMYDLYAAKVCHQN
NTKAAIEQTKQFIHTQSDTKITLTQLAHMAGISPKHYSETFKKLYGQSVTEYITDIRITNAKKLMAKANCKLREIAHQIG
YQDEFYFSRIFKKHTGSSPTSYMKKRRTKMAAYGKETMGHLIPLHHVPYAAALHPKWTAYYYKQFSSDIPVHLSAYRYNA
NWEENLHTLSQAAPDIIFSLDSVSEEEKQRLNDITDVFYLPAQENWRDQFLRTAAYLNEEQEARHWLKAYQSLAHSAKDA
LKHVRHQRFLFVRVYKENMYIAHNNSIEDVFFGDLGFASAKPESFAPDEKISLDMLADCQADCIMLFTCKEPETLRYFQR
IQQTGIWQNLRAVSNKRVFPISSDPWIEYSPSGHQRMIEQSISILSEDRPW

Sequences:

>Translated_531_residues
MKNTLFFQPIDIISVKKTADLLSEHQLTDSPVLIFHVKGEGQIDIGTDSFPLQKETLYICPCDETFNIAPIPSGGIHLYI
VRLRVFSYSSDNEAMLPDNGEDIFHGLQQMNLQTVDHLTSRLQSLSENVRSADALQKMKYTADFQQLMYDLYAAKVCHQN
NTKAAIEQTKQFIHTQSDTKITLTQLAHMAGISPKHYSETFKKLYGQSVTEYITDIRITNAKKLMAKANCKLREIAHQIG
YQDEFYFSRIFKKHTGSSPTSYMKKRRTKMAAYGKETMGHLIPLHHVPYAAALHPKWTAYYYKQFSSDIPVHLSAYRYNA
NWEENLHTLSQAAPDIIFSLDSVSEEEKQRLNDITDVFYLPAQENWRDQFLRTAAYLNEEQEARHWLKAYQSLAHSAKDA
LKHVRHQRFLFVRVYKENMYIAHNNSIEDVFFGDLGFASAKPESFAPDEKISLDMLADCQADCIMLFTCKEPETLRYFQR
IQQTGIWQNLRAVSNKRVFPISSDPWIEYSPSGHQRMIEQSISILSEDRPW
>Mature_531_residues
MKNTLFFQPIDIISVKKTADLLSEHQLTDSPVLIFHVKGEGQIDIGTDSFPLQKETLYICPCDETFNIAPIPSGGIHLYI
VRLRVFSYSSDNEAMLPDNGEDIFHGLQQMNLQTVDHLTSRLQSLSENVRSADALQKMKYTADFQQLMYDLYAAKVCHQN
NTKAAIEQTKQFIHTQSDTKITLTQLAHMAGISPKHYSETFKKLYGQSVTEYITDIRITNAKKLMAKANCKLREIAHQIG
YQDEFYFSRIFKKHTGSSPTSYMKKRRTKMAAYGKETMGHLIPLHHVPYAAALHPKWTAYYYKQFSSDIPVHLSAYRYNA
NWEENLHTLSQAAPDIIFSLDSVSEEEKQRLNDITDVFYLPAQENWRDQFLRTAAYLNEEQEARHWLKAYQSLAHSAKDA
LKHVRHQRFLFVRVYKENMYIAHNNSIEDVFFGDLGFASAKPESFAPDEKISLDMLADCQADCIMLFTCKEPETLRYFQR
IQQTGIWQNLRAVSNKRVFPISSDPWIEYSPSGHQRMIEQSISILSEDRPW

Specific function: Unknown

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=121, Percent_Identity=28.099173553719, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1786251, Length=98, Percent_Identity=30.6122448979592, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002491 [H]

Pfam domain/function: PF00165 HTH_AraC; PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 61405; Mature: 61405

Theoretical pI: Translated: 7.14; Mature: 7.14

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2 ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNTLFFQPIDIISVKKTADLLSEHQLTDSPVLIFHVKGEGQIDIGTDSFPLQKETLYIC
CCCCEEECCCHHEEHHHHHHHHHHCCCCCCCEEEEEECCCCEEEECCCCCCCCCCEEEEE
PCDETFNIAPIPSGGIHLYIVRLRVFSYSSDNEAMLPDNGEDIFHGLQQMNLQTVDHLTS
ECCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHH
RLQSLSENVRSADALQKMKYTADFQQLMYDLYAAKVCHQNNTKAAIEQTKQFIHTQSDTK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCE
ITLTQLAHMAGISPKHYSETFKKLYGQSVTEYITDIRITNAKKLMAKANCKLREIAHQIG
EHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCEECCHHHHHHHHCCHHHHHHHHCC
YQDEFYFSRIFKKHTGSSPTSYMKKRRTKMAAYGKETMGHLIPLHHVPYAAALHPKWTAY
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHCCHHCCCCHHCCCCCHHHH
YYKQFSSDIPVHLSAYRYNANWEENLHTLSQAAPDIIFSLDSVSEEEKQRLNDITDVFYL
HHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHCCHHEEEHHHCCHHHHHHHHHHHHEEEC
PAQENWRDQFLRTAAYLNEEQEARHWLKAYQSLAHSAKDALKHVRHQRFLFVRVYKENMY
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCEE
IAHNNSIEDVFFGDLGFASAKPESFAPDEKISLDMLADCQADCIMLFTCKEPETLRYFQR
EEECCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCHHHHHHHH
IQQTGIWQNLRAVSNKRVFPISSDPWIEYSPSGHQRMIEQSISILSEDRPW
HHHHCHHHHHHHHCCCEEEECCCCCCEEECCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKNTLFFQPIDIISVKKTADLLSEHQLTDSPVLIFHVKGEGQIDIGTDSFPLQKETLYIC
CCCCEEECCCHHEEHHHHHHHHHHCCCCCCCEEEEEECCCCEEEECCCCCCCCCCEEEEE
PCDETFNIAPIPSGGIHLYIVRLRVFSYSSDNEAMLPDNGEDIFHGLQQMNLQTVDHLTS
ECCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHH
RLQSLSENVRSADALQKMKYTADFQQLMYDLYAAKVCHQNNTKAAIEQTKQFIHTQSDTK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCE
ITLTQLAHMAGISPKHYSETFKKLYGQSVTEYITDIRITNAKKLMAKANCKLREIAHQIG
EHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCEECCHHHHHHHHCCHHHHHHHHCC
YQDEFYFSRIFKKHTGSSPTSYMKKRRTKMAAYGKETMGHLIPLHHVPYAAALHPKWTAY
CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHCCHHCCCCHHCCCCCHHHH
YYKQFSSDIPVHLSAYRYNANWEENLHTLSQAAPDIIFSLDSVSEEEKQRLNDITDVFYL
HHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHCCHHEEEHHHCCHHHHHHHHHHHHEEEC
PAQENWRDQFLRTAAYLNEEQEARHWLKAYQSLAHSAKDALKHVRHQRFLFVRVYKENMY
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCEE
IAHNNSIEDVFFGDLGFASAKPESFAPDEKISLDMLADCQADCIMLFTCKEPETLRYFQR
EEECCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCHHHHHHHH
IQQTGIWQNLRAVSNKRVFPISSDPWIEYSPSGHQRMIEQSISILSEDRPW
HHHHCHHHHHHHHCCCEEEECCCCCCEEECCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]