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The map label for this gene is abrB [H]

Identifier: 154684556

GI number: 154684556

Start: 45611

End: 45895

Strand: Reverse

Name: abrB [H]

Synonym: RBAM_000460

Alternate gene names: 154684556

Gene position: 45895-45611 (Counterclockwise)

Preceding gene: 154684670

Following gene: 154684536

Centisome position: 1.17

GC content: 38.95

Gene sequence:

>285_bases
ATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTACACTGGG
CATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGCGCTGAG
CAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Upstream 100 bases:

>100_bases
TTGGAAACCTTGTTATGCTAGGAATGTAAGGAATTTTGTCGAATAATGACGAAGAAAAATATAAACTACAAAATAATTAT
CTCTCGGGAGGAGACTGTTA

Downstream 100 bases:

>100_bases
GCTATTTCATACAAAAACCGTTCTTGTTACGATACAAGAACGGTTTTTTTTATGATTGAATGTGATAAGCATCATAAATC
TCGCGTTTCGGAACGCCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEGAE
QIISEIQNQLQNQK

Sequences:

>Translated_94_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEGAE
QIISEIQNQLQNQK
>Mature_94_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEGAE
QIISEIQNQLQNQK

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 10509; Mature: 10509

Theoretical pI: Translated: 6.70; Mature: 6.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEV
CCCCCHHHHHHHCCCEEEEEEEHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEEECCC
SDDNLKLAGGKLVLSKEGAEQIISEIQNQLQNQK
CCCCEEEECCEEEEECCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEV
CCCCCHHHHHHHCCCEEEEEEEHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEEECCC
SDDNLKLAGGKLVLSKEGAEQIISEIQNQLQNQK
CCCCEEEECCEEEEECCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]