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The map label for this gene is 154248537

Identifier: 154248537

GI number: 154248537

Start: 5103047

End: 5104717

Strand: Reverse

Name: 154248537

Synonym: Xaut_4618

Alternate gene names: NA

Gene position: 5104717-5103047 (Counterclockwise)

Preceding gene: 154248538

Following gene: 154248536

Centisome position: 96.15

GC content: 69.84

Gene sequence:

>1671_bases
ATGGCACCAACCGACGAACTGGTCTTCGCCCCCCTCGGTGGGGTCGGCGAGATCGGCATGAACCTCGGCCTCTACGGCTT
TGGCCCGCGCAAGGCCCGCACCTGGCTCATCGTCGATCTCGGCATGAGCTTCGCGGGCGAGGAGGCGCCGGGGGTCGACC
TCGTCCTGCCCGACATCCGCTTCCTGGAGGCCGAGAAGAAGCACATCGCCGGCCTGGTCCTCACCCATGCCCACGAAGAC
CATATCGGCGCGGTGCTGGACCTCTGGCCGCGCCTGAAGTGTCCCATCTACACCACCCGCTTCACGGCCGGGCTGCTGGA
AGCCAAGCGCGCGGGCGAGCCTGGCGCGCCGTCCCAGCTGCCGATCACCGTGGTGCGCAGCGGCGGGACCGTGGACATCG
GCCCCTTCGGGGTTGAATTCATCCCGGTCGCCCACTCGATCCCAGACAGCCACGCCCTGGCGATCCGCACTGCCGCAGGG
CTGGTGGTCCACACCGGCGACTGGAAGCTGGACCCGACCCCGGTGGTGGGCCTGCCCACGGATGTCGCCCGACTCAAGGC
GCTGGGCGACGAGGGCGTCCGCGCCATCATCTGCGATTCCACCAACGCCGTGCGCGACGGCGTTTCGCCGTCCGAGGCGG
ATGTGGCGGCCTCGCTCCGGAAGATTGTCGGCAAGGCGAAGCACCGGGTGGCCTTTACCACCTTCTCCTCCAACGTGGCG
CGCATCCGCGGCATCGCCGAGTCGGCCTACGCCAATGGCCGTGAGGTGGTGGTGGTGGGCCGTGCGCTGGAGCGCGTCAT
CGGCGTCGCCCGCGAGCAGGGCCTGCTGGACGGGGTGCCCGCGTTCCGCACCGCCGAGGCCTATGGCTACCTGCCGCGTG
AGAAGGTCGTGGCCATCCTCACCGGCAGCCAGGGCGAGCAGCGCGCCGCGCTGCGCCGCATCGCCGACGACGACCACCCG
GAGATCGCTCTGTCGCCCGGCGACCTGGTGGTGTTTTCCTCGCGCACCATTCCCGGCAACGAGAAGGTGGTGAACCACAT
CATCAACGCCCTCACCAAACGGGGCGTTGAGGTGCTGACCGACCGCAAGGCGCTGGTCCATGTGTCCGGCCATCCGCGCC
GGGGCGAGCTTGCGGAAATGTACCGCATGGTACGGCCGCAGGTGTCGATCCCGGTTCACGGCGAGGCGCTGCACCTGCAT
GAGCATGCCCAGCTGGCGAAGAGCCTCGGCGTGCCCGAGGTGGTCAATTGCTATGACGGCAACGTCATCCGCCTCGCCCC
CGGCCCGGCGGAGCGGGTGGACGACGTGCCCTTCGGCCGCCTTTACAAGGACGGCCGGCTGCTGATCCCCGATGGCGGCC
GCTCGATCCCGGAGCGGCGCAAGCTCTCCTTCGTGGGTGCGGTGTCGGTCGCCGTCGCCGTGGACCGGCAGGGTGGGCTT
GCCGGCGACCCGTCGGTGGAGATCACCGGCGTTCCGGAGCGGGGGGAGGGCGGCATCGACATGCTTGACCACGTGCTCGA
CACCGTGGTGGCGACGCTCGACAACCTGCCCAAGGCCCGCCGCCGCGATCCTGATGCGCTGGCGGAAACCCTGGAGCGCG
CGGTGCGCAGCGCCGTGAACGCGGTGTGGGGCAAGAAGCCGGTGTGCCACGTCCATATCCTGGAGGTGTGA

Upstream 100 bases:

>100_bases
ATACCTCCTCCGGCCTCCTGATTTTCGGCGCGCCCGTCCGCGTGCCCCGGTTTGGCGGGGCCTTGTCGGCGCGGGTGCCG
CGTTTGGAAGTGACCCTTTG

Downstream 100 bases:

>100_bases
GCGGTGAGAGGGCGCGGCCGGCCGGGCGCGTCTTCGACCTCCGGCGTGTTCCGCGCCAGCTTCGCTTGCGGTATGGATCG
ACAAATCTGAGCGGAGGAAA

Product: beta-lactamase domain-containing protein

Products: NA

Alternate protein names: RNase J [H]

Number of amino acids: Translated: 556; Mature: 555

Protein sequence:

>556_residues
MAPTDELVFAPLGGVGEIGMNLGLYGFGPRKARTWLIVDLGMSFAGEEAPGVDLVLPDIRFLEAEKKHIAGLVLTHAHED
HIGAVLDLWPRLKCPIYTTRFTAGLLEAKRAGEPGAPSQLPITVVRSGGTVDIGPFGVEFIPVAHSIPDSHALAIRTAAG
LVVHTGDWKLDPTPVVGLPTDVARLKALGDEGVRAIICDSTNAVRDGVSPSEADVAASLRKIVGKAKHRVAFTTFSSNVA
RIRGIAESAYANGREVVVVGRALERVIGVAREQGLLDGVPAFRTAEAYGYLPREKVVAILTGSQGEQRAALRRIADDDHP
EIALSPGDLVVFSSRTIPGNEKVVNHIINALTKRGVEVLTDRKALVHVSGHPRRGELAEMYRMVRPQVSIPVHGEALHLH
EHAQLAKSLGVPEVVNCYDGNVIRLAPGPAERVDDVPFGRLYKDGRLLIPDGGRSIPERRKLSFVGAVSVAVAVDRQGGL
AGDPSVEITGVPERGEGGIDMLDHVLDTVVATLDNLPKARRRDPDALAETLERAVRSAVNAVWGKKPVCHVHILEV

Sequences:

>Translated_556_residues
MAPTDELVFAPLGGVGEIGMNLGLYGFGPRKARTWLIVDLGMSFAGEEAPGVDLVLPDIRFLEAEKKHIAGLVLTHAHED
HIGAVLDLWPRLKCPIYTTRFTAGLLEAKRAGEPGAPSQLPITVVRSGGTVDIGPFGVEFIPVAHSIPDSHALAIRTAAG
LVVHTGDWKLDPTPVVGLPTDVARLKALGDEGVRAIICDSTNAVRDGVSPSEADVAASLRKIVGKAKHRVAFTTFSSNVA
RIRGIAESAYANGREVVVVGRALERVIGVAREQGLLDGVPAFRTAEAYGYLPREKVVAILTGSQGEQRAALRRIADDDHP
EIALSPGDLVVFSSRTIPGNEKVVNHIINALTKRGVEVLTDRKALVHVSGHPRRGELAEMYRMVRPQVSIPVHGEALHLH
EHAQLAKSLGVPEVVNCYDGNVIRLAPGPAERVDDVPFGRLYKDGRLLIPDGGRSIPERRKLSFVGAVSVAVAVDRQGGL
AGDPSVEITGVPERGEGGIDMLDHVLDTVVATLDNLPKARRRDPDALAETLERAVRSAVNAVWGKKPVCHVHILEV
>Mature_555_residues
APTDELVFAPLGGVGEIGMNLGLYGFGPRKARTWLIVDLGMSFAGEEAPGVDLVLPDIRFLEAEKKHIAGLVLTHAHEDH
IGAVLDLWPRLKCPIYTTRFTAGLLEAKRAGEPGAPSQLPITVVRSGGTVDIGPFGVEFIPVAHSIPDSHALAIRTAAGL
VVHTGDWKLDPTPVVGLPTDVARLKALGDEGVRAIICDSTNAVRDGVSPSEADVAASLRKIVGKAKHRVAFTTFSSNVAR
IRGIAESAYANGREVVVVGRALERVIGVAREQGLLDGVPAFRTAEAYGYLPREKVVAILTGSQGEQRAALRRIADDDHPE
IALSPGDLVVFSSRTIPGNEKVVNHIINALTKRGVEVLTDRKALVHVSGHPRRGELAEMYRMVRPQVSIPVHGEALHLHE
HAQLAKSLGVPEVVNCYDGNVIRLAPGPAERVDDVPFGRLYKDGRLLIPDGGRSIPERRKLSFVGAVSVAVAVDRQGGLA
GDPSVEITGVPERGEGGIDMLDHVLDTVVATLDNLPKARRRDPDALAETLERAVRSAVNAVWGKKPVCHVHILEV

Specific function: Unknown

COG id: COG0595

COG function: function code R; Predicted hydrolase of the metallo-beta-lactamase superfamily

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family. RNase J subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279
- InterPro:   IPR011108
- InterPro:   IPR001587 [H]

Pfam domain/function: PF00753 Lactamase_B; PF07521 RMMBL [H]

EC number: NA

Molecular weight: Translated: 59428; Mature: 59297

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPTDELVFAPLGGVGEIGMNLGLYGFGPRKARTWLIVDLGMSFAGEEAPGVDLVLPDIR
CCCCCCEEEECCCCCHHHCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCEEEECCHH
FLEAEKKHIAGLVLTHAHEDHIGAVLDLWPRLKCPIYTTRFTAGLLEAKRAGEPGAPSQL
HHHHHHHHHEEEEEEECCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCC
PITVVRSGGTVDIGPFGVEFIPVAHSIPDSHALAIRTAAGLVVHTGDWKLDPTPVVGLPT
CEEEEECCCEEEECCCCEEEEEEECCCCCCCEEEEEEECCEEEECCCCEECCCCEECCCH
DVARLKALGDEGVRAIICDSTNAVRDGVSPSEADVAASLRKIVGKAKHRVAFTTFSSNVA
HHHHHHHCCCCCCEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCHH
RIRGIAESAYANGREVVVVGRALERVIGVAREQGLLDGVPAFRTAEAYGYLPREKVVAIL
HHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHEEEEE
TGSQGEQRAALRRIADDDHPEIALSPGDLVVFSSRTIPGNEKVVNHIINALTKRGVEVLT
ECCCCHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHEEE
DRKALVHVSGHPRRGELAEMYRMVRPQVSIPVHGEALHLHEHAQLAKSLGVPEVVNCYDG
CCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHCCCCCEECCCCC
NVIRLAPGPAERVDDVPFGRLYKDGRLLIPDGGRSIPERRKLSFVGAVSVAVAVDRQGGL
CEEEECCCCHHHCCCCCCCCEECCCEEEECCCCCCCCHHHHEEEEEEEEEEEEEECCCCC
AGDPSVEITGVPERGEGGIDMLDHVLDTVVATLDNLPKARRRDPDALAETLERAVRSAVN
CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHH
AVWGKKPVCHVHILEV
HHHCCCCEEEEEEEEC
>Mature Secondary Structure 
APTDELVFAPLGGVGEIGMNLGLYGFGPRKARTWLIVDLGMSFAGEEAPGVDLVLPDIR
CCCCCEEEECCCCCHHHCCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCCEEEECCHH
FLEAEKKHIAGLVLTHAHEDHIGAVLDLWPRLKCPIYTTRFTAGLLEAKRAGEPGAPSQL
HHHHHHHHHEEEEEEECCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCC
PITVVRSGGTVDIGPFGVEFIPVAHSIPDSHALAIRTAAGLVVHTGDWKLDPTPVVGLPT
CEEEEECCCEEEECCCCEEEEEEECCCCCCCEEEEEEECCEEEECCCCEECCCCEECCCH
DVARLKALGDEGVRAIICDSTNAVRDGVSPSEADVAASLRKIVGKAKHRVAFTTFSSNVA
HHHHHHHCCCCCCEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCHH
RIRGIAESAYANGREVVVVGRALERVIGVAREQGLLDGVPAFRTAEAYGYLPREKVVAIL
HHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCHHHEEEEE
TGSQGEQRAALRRIADDDHPEIALSPGDLVVFSSRTIPGNEKVVNHIINALTKRGVEVLT
ECCCCHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHEEE
DRKALVHVSGHPRRGELAEMYRMVRPQVSIPVHGEALHLHEHAQLAKSLGVPEVVNCYDG
CCEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHCCCCCEECCCCC
NVIRLAPGPAERVDDVPFGRLYKDGRLLIPDGGRSIPERRKLSFVGAVSVAVAVDRQGGL
CEEEECCCCHHHCCCCCCCCEECCCEEEECCCCCCCCHHHHEEEEEEEEEEEEEECCCCC
AGDPSVEITGVPERGEGGIDMLDHVLDTVVATLDNLPKARRRDPDALAETLERAVRSAVN
CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHH
AVWGKKPVCHVHILEV
HHHCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12948626 [H]