Click here to switch to the map view.

The map label for this gene is ugpB [H]

Identifier: 154248369

GI number: 154248369

Start: 4941306

End: 4942646

Strand: Direct

Name: ugpB [H]

Synonym: Xaut_4449

Alternate gene names: 154248369

Gene position: 4941306-4942646 (Clockwise)

Preceding gene: 154248366

Following gene: 154248370

Centisome position: 93.08

GC content: 66.74

Gene sequence:

>1341_bases
ATGGTCCATTCGTCCCGACGCGGCGTGCTCACGGCGCTCGTCGTCTCCGCCTTCGCCGCGACCCTCGCCCAGCCGGCGGC
GGCACAGAGCCAGACCCCGACCCAGATCCAGTGGTGGCATGCCATGGCCGGCCCGCTGGGGGAGAAGCTGGAAAAGCTCG
CCGCCGATTTCAACGCCACCCAGGGCGAGTACAAGATCGTCCCGGTGTTCAAGGGCACCTATCCCGAGGCCATGACCGGG
GCCATCGCCGCCTTCCGGGCCAAGCAGCATCCAGCCATCGTGCAGGTGTTCGAGGTGGGCACCGCCACCATGATGAGCGC
CAAGGGCGCCATCTATCCCACCTACAAGCTGATGGCCGACGCCGGCGAGCCGTTCGACCCCAAGGCCTATCTGCCGGCAG
TCACGGGCTACTACACCGACACCGGCGGCAACATGCTGTCGTTCCCGTTCAATTCCTCCACCCCCATCCTCTATGTGAAC
AAGGACCTGTTCCGGAAAGCCGGCCTTGATCCGGAAACCCCGCCGAAGACCTGGCCCGAGGTGGAGGCGGCCGCGCTGAA
GGTGCAGGCGGCCGGGGTGCCCTGCGGCTTCACCACCCAGTGGCCGAGCTGGGTGAATGTCGAGAACCTCTCCGCCTGGC
ACAATGTGCCTGTGGGCACGCTGGAAAACGGGCTGGGCGGCACCGCCACCCGCCTCACCATCGCCAACCCGCTCACCCAG
AAGCACTGGGAAGCCCTCGCCCGCTGGCAGAAGACGAAGATCTACGATTATGGTGGCCGCCAGTCGAAGGCGGACCCGAA
ATTCTTCTCCGGCGAATGCGCCATGAGCATCGGCTCCTCGGCGGCGCGGGCGGGCATCCTCGCAAATTCCAAATTCGAGC
TGGGCTACGGCATGATGCCCTACTGGCCCGACGTTCAGGGCGCGCCGCAGAACGCCATCATCGGCGGCGCTACCCTGTGG
GTGCTTACCGGCCGGCCGGCCGAGGAATACAAGGGCGTCGCCAAGTTCTTCGGCTACCTGTCGCGGCCCGAGGTGCAGGC
GTGGTGGCACCAGAACACGGGCTACCTGCCGATCACGCAGGCCGCCTACGACCTCTCTCGCGCCCAAGGCTTCTACGAGA
AGAACCCCGGCACCGATGTCTCCATCCGCCAGATGACGCTGAAGGCGCCCACCGCCAATTCCAAGGGCCTGCGCTTCGGC
AATTTCCTGCAGATCCGCGACGTGATCGAGGAGGAACTGGAGGCGACGCTGGCCGGCCAGAAGACGCCGCAGGCCGCCCT
CGCCGCCGCCGAGGCCCGCGGCAACGAGCAACTGCGGGCGTTCGAGAAGGCCAATCCGTGA

Upstream 100 bases:

>100_bases
CGCTTTGATCGCCGTCTGTCATGGAACGGTAACGCTAGGACTTCATCCATCCGGATCTGACGCGGGCCGCACGGCACCGC
CGCTTTCCGTGGAGGCTCAC

Downstream 100 bases:

>100_bases
GGGATGCCCTCGTGTCCCGGCCGACTGAAGCGATAGCGCAAGGAGAGCCGGGACCCAGCGGCGGTGGGCTCCGGCAGCGC
CCTCGCTGGATTCTGGAACC

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MVHSSRRGVLTALVVSAFAATLAQPAAAQSQTPTQIQWWHAMAGPLGEKLEKLAADFNATQGEYKIVPVFKGTYPEAMTG
AIAAFRAKQHPAIVQVFEVGTATMMSAKGAIYPTYKLMADAGEPFDPKAYLPAVTGYYTDTGGNMLSFPFNSSTPILYVN
KDLFRKAGLDPETPPKTWPEVEAAALKVQAAGVPCGFTTQWPSWVNVENLSAWHNVPVGTLENGLGGTATRLTIANPLTQ
KHWEALARWQKTKIYDYGGRQSKADPKFFSGECAMSIGSSAARAGILANSKFELGYGMMPYWPDVQGAPQNAIIGGATLW
VLTGRPAEEYKGVAKFFGYLSRPEVQAWWHQNTGYLPITQAAYDLSRAQGFYEKNPGTDVSIRQMTLKAPTANSKGLRFG
NFLQIRDVIEEELEATLAGQKTPQAALAAAEARGNEQLRAFEKANP

Sequences:

>Translated_446_residues
MVHSSRRGVLTALVVSAFAATLAQPAAAQSQTPTQIQWWHAMAGPLGEKLEKLAADFNATQGEYKIVPVFKGTYPEAMTG
AIAAFRAKQHPAIVQVFEVGTATMMSAKGAIYPTYKLMADAGEPFDPKAYLPAVTGYYTDTGGNMLSFPFNSSTPILYVN
KDLFRKAGLDPETPPKTWPEVEAAALKVQAAGVPCGFTTQWPSWVNVENLSAWHNVPVGTLENGLGGTATRLTIANPLTQ
KHWEALARWQKTKIYDYGGRQSKADPKFFSGECAMSIGSSAARAGILANSKFELGYGMMPYWPDVQGAPQNAIIGGATLW
VLTGRPAEEYKGVAKFFGYLSRPEVQAWWHQNTGYLPITQAAYDLSRAQGFYEKNPGTDVSIRQMTLKAPTANSKGLRFG
NFLQIRDVIEEELEATLAGQKTPQAALAAAEARGNEQLRAFEKANP
>Mature_446_residues
MVHSSRRGVLTALVVSAFAATLAQPAAAQSQTPTQIQWWHAMAGPLGEKLEKLAADFNATQGEYKIVPVFKGTYPEAMTG
AIAAFRAKQHPAIVQVFEVGTATMMSAKGAIYPTYKLMADAGEPFDPKAYLPAVTGYYTDTGGNMLSFPFNSSTPILYVN
KDLFRKAGLDPETPPKTWPEVEAAALKVQAAGVPCGFTTQWPSWVNVENLSAWHNVPVGTLENGLGGTATRLTIANPLTQ
KHWEALARWQKTKIYDYGGRQSKADPKFFSGECAMSIGSSAARAGILANSKFELGYGMMPYWPDVQGAPQNAIIGGATLW
VLTGRPAEEYKGVAKFFGYLSRPEVQAWWHQNTGYLPITQAAYDLSRAQGFYEKNPGTDVSIRQMTLKAPTANSKGLRFG
NFLQIRDVIEEELEATLAGQKTPQAALAAAEARGNEQLRAFEKANP

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=417, Percent_Identity=51.3189448441247, Blast_Score=442, Evalue=1e-125,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48409; Mature: 48409

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHSSRRGVLTALVVSAFAATLAQPAAAQSQTPTQIQWWHAMAGPLGEKLEKLAADFNAT
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHCHHHHHHHHHHHHCCCC
QGEYKIVPVFKGTYPEAMTGAIAAFRAKQHPAIVQVFEVGTATMMSAKGAIYPTYKLMAD
CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCCCCCCHHHHCC
AGEPFDPKAYLPAVTGYYTDTGGNMLSFPFNSSTPILYVNKDLFRKAGLDPETPPKTWPE
CCCCCCCCCCCCCEECEEECCCCCEEEECCCCCCCEEEECHHHHHHCCCCCCCCCCCCCC
VEAAALKVQAAGVPCGFTTQWPSWVNVENLSAWHNVPVGTLENGLGGTATRLTIANPLTQ
CHHHEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHCCCCCCCEEEEEECCCHHH
KHWEALARWQKTKIYDYGGRQSKADPKFFSGECAMSIGSSAARAGILANSKFELGYGMMP
HHHHHHHHHHHCEEEECCCCCCCCCCCEECCCHHHHCCCHHHHHCEEECCCEECCCCCCC
YWPDVQGAPQNAIIGGATLWVLTGRPAEEYKGVAKFFGYLSRPEVQAWWHQNTGYLPITQ
CCCCCCCCCCCEEECCEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEHHH
AAYDLSRAQGFYEKNPGTDVSIRQMTLKAPTANSKGLRFGNFLQIRDVIEEELEATLAGQ
HHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
KTPQAALAAAEARGNEQLRAFEKANP
CCCHHHHHHHHHCCCHHHHHHHCCCC
>Mature Secondary Structure
MVHSSRRGVLTALVVSAFAATLAQPAAAQSQTPTQIQWWHAMAGPLGEKLEKLAADFNAT
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHCHHHHHHHHHHHHCCCC
QGEYKIVPVFKGTYPEAMTGAIAAFRAKQHPAIVQVFEVGTATMMSAKGAIYPTYKLMAD
CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHCCCCCCCCHHHHCC
AGEPFDPKAYLPAVTGYYTDTGGNMLSFPFNSSTPILYVNKDLFRKAGLDPETPPKTWPE
CCCCCCCCCCCCCEECEEECCCCCEEEECCCCCCCEEEECHHHHHHCCCCCCCCCCCCCC
VEAAALKVQAAGVPCGFTTQWPSWVNVENLSAWHNVPVGTLENGLGGTATRLTIANPLTQ
CHHHEEEEEECCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHCCCCCCCEEEEEECCCHHH
KHWEALARWQKTKIYDYGGRQSKADPKFFSGECAMSIGSSAARAGILANSKFELGYGMMP
HHHHHHHHHHHCEEEECCCCCCCCCCCEECCCHHHHCCCHHHHHCEEECCCEECCCCCCC
YWPDVQGAPQNAIIGGATLWVLTGRPAEEYKGVAKFFGYLSRPEVQAWWHQNTGYLPITQ
CCCCCCCCCCCEEECCEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEHHH
AAYDLSRAQGFYEKNPGTDVSIRQMTLKAPTANSKGLRFGNFLQIRDVIEEELEATLAGQ
HHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
KTPQAALAAAEARGNEQLRAFEKANP
CCCHHHHHHHHHCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA