| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is pgaC [H]
Identifier: 154248343
GI number: 154248343
Start: 4905640
End: 4908357
Strand: Direct
Name: pgaC [H]
Synonym: Xaut_4423
Alternate gene names: 154248343
Gene position: 4905640-4908357 (Clockwise)
Preceding gene: 154248342
Following gene: 154248344
Centisome position: 92.4
GC content: 66.41
Gene sequence:
>2718_bases ATGCGTCCCGGTCTTGCTGCTGCGGCGGCGGTCATTGCGGTTGTGACCTCGATCCACGCCGCAATGTGGCTTTCCCTGCG TCCCGAGGTGAGCGCTCCGAACATCACGGACCGCTTCCAGAGCCTGTCCTTCGCCCCCTTCAGCCGGGACATGAGCCCCG AGGGCGAGGCGCCTACCAATGCGGCGCAGATCCGCTCCGACATGCAGGTGGTGGCGCCTTACACGCGCGGCGTTCGAACC TACTCCTCCACCAACGGCAAGGAACTGATCGCCCCCATCGCCGGCGAGCAGGGCATCCGGGTGACCGCGGGCGCGTGGCT GAACCGCCAGAGCGACAAGGACACCGGCGAAATCATCCCCAAGGCCAAGGCCGCCAACGACCGCGAAATCGCGGGCGTGA TCGAGGTGGCCCGCCAGAACCGCAACGTGCAGGCCGTGGTCGTCGGCAACGAGACCCTGCTGCGCGGTGACATGAGCGAC GACGAGCTGGCTGAGCTGATCCGCAGCGTGAAGCGGCAGGTGAACGTGCCGGTGACCTCCGGCGAAATCTGGAACACCTG GCTCGACCACCCCAAAGTGGCTTCCTCGGTGGACTTCATCCTCGCCCACATCCTGCCGTACTGGGAGGACGTGCCGGCGG ACAAGGTGGTCGACTACACCATCGACGCCTACAACCGCCTGCGCGCCGCCTATCCTGGCAAGCGCATTGTCATCGGCGAG TTCGGCTGGCCCTCCCACGGCTACAATCGCGGCGCCTCGGTGCCCGATCCGCTGGCGCAGGCCATGATCATCCGCGATTT CGTCGCCCGCGCCGACGCGCTGGGCATCGAATACAACATCATCGAGGCGTTCGACCTGCCCAAGAAGCAGAACGAAGGCT CGGTGGGCCAGTACTGGGGCGTGTTCGACGCCGACCGCGACCTGAAGTTCCCGCTCAGTGGCCCGATCTACGACCACACC TACAACCAGACCACCATTCTGGCGTTGCTGCTGGGCGTGCTGTTCACCCTGCCGCTGCTGCGCATGCGTGAACTGACCAT GTCGCAGGGCCTGGTGCTGGCGGGCGCCGCCAACGGTGTCGCGGCCTGGCTGGCGATGGTGGTGGACTACTGGCTCAACC ACTATGTGACCGGCGGCGACTACGTCACCCTGGCGCTCAGCGTGGTGATGCTGGTGCCCCTTGTCTTCGTGCTGCTCTAC CGCATCGAGGAGATGGCGGCGATCGCCTTCGGTAGCGGACCCCGCCGCCTGATCGACGCGCGCAAGGCTGCCGTCGTGCC GACGGTGCCCTCGCGCTTCCCCAAGGTCTCCATTCATGTGCCCGCCTATCGCGAGCCGCCGGAGATGCTGAAGCAGACCA TCGATGCCCTGGCGGCGCTCGAATATCCCAATTTCGAGGCCATCATCATCATCAACAACACGCCCGACCCGGCCATGGTG GAGCCCGTGCGCGAGTATTGCGCGGCGCTGGGCGAGCGCTTCAAGTTCATCAATGCGGAGAAGGTGGCGGGCTTCAAGGC TGGCGCCCTGCGCATCGCGCTCGACGCCACGGCCCCGGACGCCGAGATCATCGGTGTGATCGACGCCGACTATGTGGTGA CGCCCGACTGGCTGAAGGAGCTGGTGCCGGTATTCGACGACCCCACCGTGGGTCTGGTCCAGGCGCCCCAGGACCATCGC GATGCCGACCGCAGCCTGCTGCACGAGGCCATGAACGCGGAATATGCCGGCTTCTTCGACATCGGCATGGTCCAGCGCAA CGAAGACGACGCCATCGTGGTGCACGGTACCATGTGCCTCATCCGCCGCGCAGCCATGCTGGAGGCCGGCAACTGGTCGT CCGACACCATCTGCGAGGATACTGACCTCGGCCTCACCATCGCCGAGAACGGCTGGAAGACCCATTACACCCGCAAGCGC TACGGCTACGGCCTGCTGCCCGACTCGTTCGAGGCCTTCAAGAAGCAGCGTCACCGTTGGGCCTATGGCGGCTTCCAGAT CATCAAGAAACACTGGCGCAAGTTCCTGCCCAACCGCTCGCGCCTGACCACGGCCCAGAAGCGCCATTTCGTGCTCGGCT GGATTTCCTGGCTCGGCTCGGAATCGGTGGGCGCAGTGATGGCCATCGCCTCACTGGCCTTCGTACCCTTCGTGCTGCTG TTCGGCGTGTCGGTGCCAGCCCATGTGTTGACGCTGCCGATCCTGATCACCTTCCTCGTCTACCTCATGCACTTCGTCAG CCTTTACCGGCTGCGGGTGGAGACCACGCCCATGCGCATGCTGGGCGCGGCGGTGGCGGCAAGCGCGGTGCAGTATACGG TGGCCAAGGCGGTGCTGGACGGCTTCCGCTACAAGGACCTCGCCTTCGCCCGCACCGCCAAAGGCAACAACTGGCTCGCC GGCGCGGCCCGGTCCTTCCCGGCCCTGCCGGAGGCGACGCTGGGCGGCCTGCTGCTGCTGGCCGGCATCGCGCTGCTGGT CCTGAACAACTGGCCGGGCGTGGCGCTGACCAAGAACGATTGGCGCCACATCCGCGAGATCAACCTCTACGGCATCGCGC TGATGGTGCAGAGCCTGCCATTCGTCGCCGCGGCTCTCATCGGCGCCTTCGAGCCCTCGCGCTTCAACCAGGTCGCCTTC TGGCGGGCTCTCGGCGCCAAGCTCTCCCTGGCCCCCCGCCGTCCCGGCCTGACGCCCCCGCCCGCCGTCGCGGACTGA
Upstream 100 bases:
>100_bases GCGGGGGCAGGTCGAAAGGGTGCCCCGAAGCCGTTTCCCGGAACCTTTCGCCGCCAGCCGGCGTTCCCGGTTCCACTTCC CCTCTAGGGTGGGCATTGCC
Downstream 100 bases:
>100_bases GGCTCGCGCGGCTGACGCTGCAAGCCCGAACGCCCGGCCCTGTGCCGGGCGTTTTCATTTCAGGGGCAAGCGTTCGGCGG CCGGCACCCGAGGCCCACGT
Product: glycosyl transferase family protein
Products: NA
Alternate protein names: PGA synthase; Poly-beta-1,6-GlcNAc synthase; Biofilm PGA synthesis protein PgaC; N-acetylglucosaminyltransferase PgaC [H]
Number of amino acids: Translated: 905; Mature: 905
Protein sequence:
>905_residues MRPGLAAAAAVIAVVTSIHAAMWLSLRPEVSAPNITDRFQSLSFAPFSRDMSPEGEAPTNAAQIRSDMQVVAPYTRGVRT YSSTNGKELIAPIAGEQGIRVTAGAWLNRQSDKDTGEIIPKAKAANDREIAGVIEVARQNRNVQAVVVGNETLLRGDMSD DELAELIRSVKRQVNVPVTSGEIWNTWLDHPKVASSVDFILAHILPYWEDVPADKVVDYTIDAYNRLRAAYPGKRIVIGE FGWPSHGYNRGASVPDPLAQAMIIRDFVARADALGIEYNIIEAFDLPKKQNEGSVGQYWGVFDADRDLKFPLSGPIYDHT YNQTTILALLLGVLFTLPLLRMRELTMSQGLVLAGAANGVAAWLAMVVDYWLNHYVTGGDYVTLALSVVMLVPLVFVLLY RIEEMAAIAFGSGPRRLIDARKAAVVPTVPSRFPKVSIHVPAYREPPEMLKQTIDALAALEYPNFEAIIIINNTPDPAMV EPVREYCAALGERFKFINAEKVAGFKAGALRIALDATAPDAEIIGVIDADYVVTPDWLKELVPVFDDPTVGLVQAPQDHR DADRSLLHEAMNAEYAGFFDIGMVQRNEDDAIVVHGTMCLIRRAAMLEAGNWSSDTICEDTDLGLTIAENGWKTHYTRKR YGYGLLPDSFEAFKKQRHRWAYGGFQIIKKHWRKFLPNRSRLTTAQKRHFVLGWISWLGSESVGAVMAIASLAFVPFVLL FGVSVPAHVLTLPILITFLVYLMHFVSLYRLRVETTPMRMLGAAVAASAVQYTVAKAVLDGFRYKDLAFARTAKGNNWLA GAARSFPALPEATLGGLLLLAGIALLVLNNWPGVALTKNDWRHIREINLYGIALMVQSLPFVAAALIGAFEPSRFNQVAF WRALGAKLSLAPRRPGLTPPPAVAD
Sequences:
>Translated_905_residues MRPGLAAAAAVIAVVTSIHAAMWLSLRPEVSAPNITDRFQSLSFAPFSRDMSPEGEAPTNAAQIRSDMQVVAPYTRGVRT YSSTNGKELIAPIAGEQGIRVTAGAWLNRQSDKDTGEIIPKAKAANDREIAGVIEVARQNRNVQAVVVGNETLLRGDMSD DELAELIRSVKRQVNVPVTSGEIWNTWLDHPKVASSVDFILAHILPYWEDVPADKVVDYTIDAYNRLRAAYPGKRIVIGE FGWPSHGYNRGASVPDPLAQAMIIRDFVARADALGIEYNIIEAFDLPKKQNEGSVGQYWGVFDADRDLKFPLSGPIYDHT YNQTTILALLLGVLFTLPLLRMRELTMSQGLVLAGAANGVAAWLAMVVDYWLNHYVTGGDYVTLALSVVMLVPLVFVLLY RIEEMAAIAFGSGPRRLIDARKAAVVPTVPSRFPKVSIHVPAYREPPEMLKQTIDALAALEYPNFEAIIIINNTPDPAMV EPVREYCAALGERFKFINAEKVAGFKAGALRIALDATAPDAEIIGVIDADYVVTPDWLKELVPVFDDPTVGLVQAPQDHR DADRSLLHEAMNAEYAGFFDIGMVQRNEDDAIVVHGTMCLIRRAAMLEAGNWSSDTICEDTDLGLTIAENGWKTHYTRKR YGYGLLPDSFEAFKKQRHRWAYGGFQIIKKHWRKFLPNRSRLTTAQKRHFVLGWISWLGSESVGAVMAIASLAFVPFVLL FGVSVPAHVLTLPILITFLVYLMHFVSLYRLRVETTPMRMLGAAVAASAVQYTVAKAVLDGFRYKDLAFARTAKGNNWLA GAARSFPALPEATLGGLLLLAGIALLVLNNWPGVALTKNDWRHIREINLYGIALMVQSLPFVAAALIGAFEPSRFNQVAF WRALGAKLSLAPRRPGLTPPPAVAD >Mature_905_residues MRPGLAAAAAVIAVVTSIHAAMWLSLRPEVSAPNITDRFQSLSFAPFSRDMSPEGEAPTNAAQIRSDMQVVAPYTRGVRT YSSTNGKELIAPIAGEQGIRVTAGAWLNRQSDKDTGEIIPKAKAANDREIAGVIEVARQNRNVQAVVVGNETLLRGDMSD DELAELIRSVKRQVNVPVTSGEIWNTWLDHPKVASSVDFILAHILPYWEDVPADKVVDYTIDAYNRLRAAYPGKRIVIGE FGWPSHGYNRGASVPDPLAQAMIIRDFVARADALGIEYNIIEAFDLPKKQNEGSVGQYWGVFDADRDLKFPLSGPIYDHT YNQTTILALLLGVLFTLPLLRMRELTMSQGLVLAGAANGVAAWLAMVVDYWLNHYVTGGDYVTLALSVVMLVPLVFVLLY RIEEMAAIAFGSGPRRLIDARKAAVVPTVPSRFPKVSIHVPAYREPPEMLKQTIDALAALEYPNFEAIIIINNTPDPAMV EPVREYCAALGERFKFINAEKVAGFKAGALRIALDATAPDAEIIGVIDADYVVTPDWLKELVPVFDDPTVGLVQAPQDHR DADRSLLHEAMNAEYAGFFDIGMVQRNEDDAIVVHGTMCLIRRAAMLEAGNWSSDTICEDTDLGLTIAENGWKTHYTRKR YGYGLLPDSFEAFKKQRHRWAYGGFQIIKKHWRKFLPNRSRLTTAQKRHFVLGWISWLGSESVGAVMAIASLAFVPFVLL FGVSVPAHVLTLPILITFLVYLMHFVSLYRLRVETTPMRMLGAAVAASAVQYTVAKAVLDGFRYKDLAFARTAKGNNWLA GAARSFPALPEATLGGLLLLAGIALLVLNNWPGVALTKNDWRHIREINLYGIALMVQSLPFVAAALIGAFEPSRFNQVAF WRALGAKLSLAPRRPGLTPPPAVAD
Specific function: Probable N-acetylglucosaminyltransferase that catalyzes the polymerization of single monomer units of UDP-N- acetylglucosamine to produce the linear homopolymer poly-beta-1,6- N-acetyl-D-glucosamine (PGA), a biofilm adhesin polysaccharide [H]
COG id: COG1215
COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
Organism=Escherichia coli, GI1787259, Length=328, Percent_Identity=28.3536585365854, Blast_Score=96, Evalue=9e-21, Organism=Escherichia coli, GI87082284, Length=254, Percent_Identity=27.9527559055118, Blast_Score=80, Evalue=5e-16, Organism=Saccharomyces cerevisiae, GI6321721, Length=278, Percent_Identity=22.6618705035971, Blast_Score=69, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: NA
Molecular weight: Translated: 99578; Mature: 99578
Theoretical pI: Translated: 7.32; Mature: 7.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPGLAAAAAVIAVVTSIHAAMWLSLRPEVSAPNITDRFQSLSFAPFSRDMSPEGEAPTN CCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC AAQIRSDMQVVAPYTRGVRTYSSTNGKELIAPIAGEQGIRVTAGAWLNRQSDKDTGEIIP HHHHHHCHHEECHHHHCCEEECCCCCCEEEEECCCCCCCEEEECHHCCCCCCCCHHHCCC KAKAANDREIAGVIEVARQNRNVQAVVVGNETLLRGDMSDDELAELIRSVKRQVNVPVTS CCCCCCCHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHHHHCCCCCCC GEIWNTWLDHPKVASSVDFILAHILPYWEDVPADKVVDYTIDAYNRLRAAYPGKRIVIGE CHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEC FGWPSHGYNRGASVPDPLAQAMIIRDFVARADALGIEYNIIEAFDLPKKQNEGSVGQYWG CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEHCCCCCCCCCCCCCCCCC VFDADRDLKFPLSGPIYDHTYNQTTILALLLGVLFTLPLLRMRELTMSQGLVLAGAANGV CEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHH AAWLAMVVDYWLNHYVTGGDYVTLALSVVMLVPLVFVLLYRIEEMAAIAFGSGPRRLIDA HHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH RKAAVVPTVPSRFPKVSIHVPAYREPPEMLKQTIDALAALEYPNFEAIIIINNTPDPAMV HHHEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHH EPVREYCAALGERFKFINAEKVAGFKAGALRIALDATAPDAEIIGVIDADYVVTPDWLKE HHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEEECCCCCCEEEEEECCCCEECHHHHHH LVPVFDDPTVGLVQAPQDHRDADRSLLHEAMNAEYAGFFDIGMVQRNEDDAIVVHGTMCL HHCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCEEEECEEEECCCCEEEEEHHHHH IRRAAMLEAGNWSSDTICEDTDLGLTIAENGWKTHYTRKRYGYGLLPDSFEAFKKQRHRW HHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHH AYGGFQIIKKHWRKFLPNRSRLTTAQKRHFVLGWISWLGSESVGAVMAIASLAFVPFVLL HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH FGVSVPAHVLTLPILITFLVYLMHFVSLYRLRVETTPMRMLGAAVAASAVQYTVAKAVLD HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH GFRYKDLAFARTAKGNNWLAGAARSFPALPEATLGGLLLLAGIALLVLNNWPGVALTKND CCCHHHHHHHEECCCCCEEECCHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCH WRHIREINLYGIALMVQSLPFVAAALIGAFEPSRFNQVAFWRALGAKLSLAPRRPGLTPP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEECCCCCCCCCC PAVAD CCCCC >Mature Secondary Structure MRPGLAAAAAVIAVVTSIHAAMWLSLRPEVSAPNITDRFQSLSFAPFSRDMSPEGEAPTN CCCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC AAQIRSDMQVVAPYTRGVRTYSSTNGKELIAPIAGEQGIRVTAGAWLNRQSDKDTGEIIP HHHHHHCHHEECHHHHCCEEECCCCCCEEEEECCCCCCCEEEECHHCCCCCCCCHHHCCC KAKAANDREIAGVIEVARQNRNVQAVVVGNETLLRGDMSDDELAELIRSVKRQVNVPVTS CCCCCCCHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHHHHCCCCCCC GEIWNTWLDHPKVASSVDFILAHILPYWEDVPADKVVDYTIDAYNRLRAAYPGKRIVIGE CHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEC FGWPSHGYNRGASVPDPLAQAMIIRDFVARADALGIEYNIIEAFDLPKKQNEGSVGQYWG CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEHCCCCCCCCCCCCCCCCC VFDADRDLKFPLSGPIYDHTYNQTTILALLLGVLFTLPLLRMRELTMSQGLVLAGAANGV CEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHH AAWLAMVVDYWLNHYVTGGDYVTLALSVVMLVPLVFVLLYRIEEMAAIAFGSGPRRLIDA HHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH RKAAVVPTVPSRFPKVSIHVPAYREPPEMLKQTIDALAALEYPNFEAIIIINNTPDPAMV HHHEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHH EPVREYCAALGERFKFINAEKVAGFKAGALRIALDATAPDAEIIGVIDADYVVTPDWLKE HHHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEEEECCCCCCEEEEEECCCCEECHHHHHH LVPVFDDPTVGLVQAPQDHRDADRSLLHEAMNAEYAGFFDIGMVQRNEDDAIVVHGTMCL HHCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCEEEECEEEECCCCEEEEEHHHHH IRRAAMLEAGNWSSDTICEDTDLGLTIAENGWKTHYTRKRYGYGLLPDSFEAFKKQRHRW HHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHH AYGGFQIIKKHWRKFLPNRSRLTTAQKRHFVLGWISWLGSESVGAVMAIASLAFVPFVLL HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH FGVSVPAHVLTLPILITFLVYLMHFVSLYRLRVETTPMRMLGAAVAASAVQYTVAKAVLD HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH GFRYKDLAFARTAKGNNWLAGAARSFPALPEATLGGLLLLAGIALLVLNNWPGVALTKND CCCHHHHHHHEECCCCCEEECCHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCH WRHIREINLYGIALMVQSLPFVAAALIGAFEPSRFNQVAFWRALGAKLSLAPRRPGLTPP HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCEEECCCCCCCCCC PAVAD CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]