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The map label for this gene is rlpA [C]

Identifier: 154248308

GI number: 154248308

Start: 4864995

End: 4865354

Strand: Reverse

Name: rlpA [C]

Synonym: Xaut_4388

Alternate gene names: 154248308

Gene position: 4865354-4864995 (Counterclockwise)

Preceding gene: 154248310

Following gene: 154248301

Centisome position: 91.64

GC content: 66.39

Gene sequence:

>360_bases
ATGAAGATACGCGTGGTCCTGTCCTGCTTCGCCCTGTCCCTCTCGGCCGGAATGGCCGTCTCGAACACCGCAAAAGCGGA
CACCTCCACCGGCGTCGCCTCTTACTATTGGCAAGGCCGCAGCACCGCGAGCGGCGAGCGCTTCAACCCCTCCGCCATGA
CGGCGGCGCACCGCTCCCTGCCTTTCGGCACCAAGGTGCGTGTCACAAATCTGCGCAACGGACGCACTGTCGTCGTGCGC
ATCAATGATCGCGGCCCCTTTGTCCGCGGCCGGGTGATCGACGTGTCCCGCGCCGCCGCCTCGGAGCTCGGCTTCACCAA
CTCGGGCATCACCCGCGTTGCCCTCGCCGTGATGGACTGA

Upstream 100 bases:

>100_bases
GATACCCGAATCATCACTTTTTCGCCGGCAAATTGGGACGCTATCGCCCCATTGCGACGCCATTCGGCAATCATCTGAAA
CTACACGGAAGATTGATTGC

Downstream 100 bases:

>100_bases
CCCGCGGCAGGGATTTTAGGACCAATCAGGCCTGACGGGGCCGCGCGTCTGGATGGAGGCACTCTCCGGCGCGACCTCGT
CGCCTTTGTGTATTGATGGC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 119; Mature: 119

Protein sequence:

>119_residues
MKIRVVLSCFALSLSAGMAVSNTAKADTSTGVASYYWQGRSTASGERFNPSAMTAAHRSLPFGTKVRVTNLRNGRTVVVR
INDRGPFVRGRVIDVSRAAASELGFTNSGITRVALAVMD

Sequences:

>Translated_119_residues
MKIRVVLSCFALSLSAGMAVSNTAKADTSTGVASYYWQGRSTASGERFNPSAMTAAHRSLPFGTKVRVTNLRNGRTVVVR
INDRGPFVRGRVIDVSRAAASELGFTNSGITRVALAVMD
>Mature_119_residues
MKIRVVLSCFALSLSAGMAVSNTAKADTSTGVASYYWQGRSTASGERFNPSAMTAAHRSLPFGTKVRVTNLRNGRTVVVR
INDRGPFVRGRVIDVSRAAASELGFTNSGITRVALAVMD

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=72, Percent_Identity=55.5555555555556, Blast_Score=85, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 12682; Mature: 12682

Theoretical pI: Translated: 12.01; Mature: 12.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIRVVLSCFALSLSAGMAVSNTAKADTSTGVASYYWQGRSTASGERFNPSAMTAAHRSL
CEEEEEEEEHHHHHHCCCEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCC
PFGTKVRVTNLRNGRTVVVRINDRGPFVRGRVIDVSRAAASELGFTNSGITRVALAVMD
CCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCHHHHHHCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MKIRVVLSCFALSLSAGMAVSNTAKADTSTGVASYYWQGRSTASGERFNPSAMTAAHRSL
CEEEEEEEEHHHHHHCCCEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCC
PFGTKVRVTNLRNGRTVVVRINDRGPFVRGRVIDVSRAAASELGFTNSGITRVALAVMD
CCCCEEEEEECCCCCEEEEEECCCCCEEEEEEEECCHHHHHHCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]