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The map label for this gene is 154248232

Identifier: 154248232

GI number: 154248232

Start: 4779233

End: 4780063

Strand: Direct

Name: 154248232

Synonym: Xaut_4312

Alternate gene names: NA

Gene position: 4779233-4780063 (Clockwise)

Preceding gene: 154248231

Following gene: 154248236

Centisome position: 90.02

GC content: 72.44

Gene sequence:

>831_bases
GTGCGGGCGCAGGACCGCGACCGCTTCCTCGCCGCCCTGTTCGCGCCCGAGGACAAGCGCCGGCATCTCTTCGCCCTCTA
TGCCTTCAACCTGGACGTGGCGCGCGTGCGCGAAGTGGTGCGCGAGGCGTTGCCCGGCGAAGTGCGCCTTGCCTGGTGGC
GGGAGGTGATCGAGGGGGAGGGGCGCGGCGAGGTGGAAGGCCATCCGGTCGCAGCGGCGTTGCTCGACACGACGGAGTGC
TTCGCCCTGCCGCGCGCCAGCCTGACCGCGCTCGTGGATGCGCGCATCTTCGACCTTTACGACGACCCAATGCCCACGGT
TGCGGACCTGGAGGGCTATGCGGGCGAGACCGCTGCCGCGCTGCTCCAGCTGTCCGCGCTGGTGCTGTCGCCGCAGGCCT
CTGCCGGGGCCGGCGACCTCTCCGGACACGGCGGGGTCGCCATCGCCATGACCGGGCTCATGCGTGCCTTCCCCATCCAT
GCGGCGCGGGGGCAATGCTACCTGCCCCTCGATCTTCTGGCCCGCCACGGCATCGGGCGGGAGGAGGCGGTATCCGGTAA
GGTCTCGCCGCCGTTGCTGGCGGCGCTGGCCGAATTTCGCGGCATGGCGGCAGGGCACCTTGCGGCGGCGCGGGGGGCGG
CGGAGCATCTTGACCCTTCGGCGGCCATCGCCGCGCCCTATCTGCCGCTGGCGCTGGTAGCGGGTGATCTTAAGGCGCTG
GCGCGGGTCAGCGACCCGTTCAGCGCCGTGGCCGGGCTTTCGCCCTTTCGCCGCCAGTTCGCGCTCTGGCGCGCGGCGCG
GCGTGCCGCGGCCGGGAAGGTGTGGTTCTGA

Upstream 100 bases:

>100_bases
GGCGAGGGCCGCCGCGTCGGCGCCGCCCTCATCGCCGTCTGATCCGGCGATGACGGACGCCGCCATCCTCGCCGCAGCTT
ATGCCTATTGCGCCGAACAG

Downstream 100 bases:

>100_bases
AGCTGTCCGTCACGCCGCCGGGCGGGTGATCCGGTCCGTCAGGTTGAGCCGGCCACGGGCGATTTCCGCCACCTGGAGGC
GCACCGCCTCCGAGCCCGCC

Product: squalene/phytoene synthase

Products: diphosphate; prephytoene diphosphate

Alternate protein names: Phytoene Synthase; Phytoene Synthase Protein; Squalene; Squalene And Phytoene Synthases Superfamily

Number of amino acids: Translated: 276; Mature: 276

Protein sequence:

>276_residues
MRAQDRDRFLAALFAPEDKRRHLFALYAFNLDVARVREVVREALPGEVRLAWWREVIEGEGRGEVEGHPVAAALLDTTEC
FALPRASLTALVDARIFDLYDDPMPTVADLEGYAGETAAALLQLSALVLSPQASAGAGDLSGHGGVAIAMTGLMRAFPIH
AARGQCYLPLDLLARHGIGREEAVSGKVSPPLLAALAEFRGMAAGHLAAARGAAEHLDPSAAIAAPYLPLALVAGDLKAL
ARVSDPFSAVAGLSPFRRQFALWRAARRAAAGKVWF

Sequences:

>Translated_276_residues
MRAQDRDRFLAALFAPEDKRRHLFALYAFNLDVARVREVVREALPGEVRLAWWREVIEGEGRGEVEGHPVAAALLDTTEC
FALPRASLTALVDARIFDLYDDPMPTVADLEGYAGETAAALLQLSALVLSPQASAGAGDLSGHGGVAIAMTGLMRAFPIH
AARGQCYLPLDLLARHGIGREEAVSGKVSPPLLAALAEFRGMAAGHLAAARGAAEHLDPSAAIAAPYLPLALVAGDLKAL
ARVSDPFSAVAGLSPFRRQFALWRAARRAAAGKVWF
>Mature_276_residues
MRAQDRDRFLAALFAPEDKRRHLFALYAFNLDVARVREVVREALPGEVRLAWWREVIEGEGRGEVEGHPVAAALLDTTEC
FALPRASLTALVDARIFDLYDDPMPTVADLEGYAGETAAALLQLSALVLSPQASAGAGDLSGHGGVAIAMTGLMRAFPIH
AARGQCYLPLDLLARHGIGREEAVSGKVSPPLLAALAEFRGMAAGHLAAARGAAEHLDPSAAIAAPYLPLALVAGDLKAL
ARVSDPFSAVAGLSPFRRQFALWRAARRAAAGKVWF

Specific function: Unknown

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI124517691, Length=243, Percent_Identity=27.9835390946502, Blast_Score=102, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 2.5.1.32

Molecular weight: Translated: 29335; Mature: 29335

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAQDRDRFLAALFAPEDKRRHLFALYAFNLDVARVREVVREALPGEVRLAWWREVIEGE
CCCCHHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHCCC
GRGEVEGHPVAAALLDTTECFALPRASLTALVDARIFDLYDDPMPTVADLEGYAGETAAA
CCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHH
LLQLSALVLSPQASAGAGDLSGHGGVAIAMTGLMRAFPIHAARGQCYLPLDLLARHGIGR
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECHHHHHHCCCCH
EEAVSGKVSPPLLAALAEFRGMAAGHLAAARGAAEHLDPSAAIAAPYLPLALVAGDLKAL
HHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHCHHHHCCCCHHHHCCHHHHHHHHHHHHHH
ARVSDPFSAVAGLSPFRRQFALWRAARRAAAGKVWF
HHHCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRAQDRDRFLAALFAPEDKRRHLFALYAFNLDVARVREVVREALPGEVRLAWWREVIEGE
CCCCHHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHCCC
GRGEVEGHPVAAALLDTTECFALPRASLTALVDARIFDLYDDPMPTVADLEGYAGETAAA
CCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHH
LLQLSALVLSPQASAGAGDLSGHGGVAIAMTGLMRAFPIHAARGQCYLPLDLLARHGIGR
HHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEECHHHHHHCCCCH
EEAVSGKVSPPLLAALAEFRGMAAGHLAAARGAAEHLDPSAAIAAPYLPLALVAGDLKAL
HHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHCHHHHCCCCHHHHCCHHHHHHHHHHHHHH
ARVSDPFSAVAGLSPFRRQFALWRAARRAAAGKVWF
HHHCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: geranylgeranyl diphosphate

Specific reaction: 2 geranylgeranyl diphosphate = diphosphate + prephytoene diphosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA