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The map label for this gene is 154248107

Identifier: 154248107

GI number: 154248107

Start: 4631981

End: 4633240

Strand: Reverse

Name: 154248107

Synonym: Xaut_4187

Alternate gene names: NA

Gene position: 4633240-4631981 (Counterclockwise)

Preceding gene: 154248108

Following gene: 154248106

Centisome position: 87.27

GC content: 70.63

Gene sequence:

>1260_bases
GTGACCACCTCGGCGCTCGGCGATGCGGCATGGATCAACACCGCGCTCACCGCCGCGCGGCCCCAGGCGGTGGCGGCCCT
GCTGCGCTATTTCCGTGATCTCGACACCGCGGAGGAGGCCTTTCAGGAAGCCTGCCTGCGCGCGCTGAAAACCTGGCCGG
TGAACGGCCCGCCACGCGACCCGGCTGCGTGGCTGATTCTGGTGGGCCGCAATGCCGCCCTCGACGGGGTGCGCAAACGG
GCGCGCCATGATCCCCTGCCCCCGGACGAGCAATTGTCCGACCTCGATGATGCCGAAGCCGGCCTCGCCGAGCGCCTGGA
CAATTCCCACTATCGCGACGACGTGCTGCGCCTGCTGTTCATCTGCTGCCATCCCGAGCTGCCAGTGACCCAACAGATCG
CGCTGGCCCTGCGCATCGTCTCCGGCCTGTCGGTGAAGCAGATCGCCCGCGCCTTCCTCGTCAGTGAGGCGGCCATGGAG
CAGCGCATCACGCGGGCGAAGGGCCGCATCGCCAAAGCCGACGTGCCGTTCGAGGCTCCGGGGCCGGTGGAGCGGGCGGA
GCGGCTCGGCACCGTGGCGGCCATGGTCTATCTCGTGTTCAACGAAGGCTATTCGGCCGGTCCCGACCCGGATCGCGCCG
CCCTGTGCGACGACGCCATCCGTCTCGCCCGGCTGCTGCTGCGCCTGTTCCCCACCGAGCCGGAGATCATGGGGCTCAAC
GCCCTCCTCCTGCTCCAGCACGCCCGCGCCGCCGCGCGCTTCGACGCCGACGGGCGCGTGATCCTGCTGGACGCGCAGGA
CCGCACCCGATGGGATCGCACCCGCATCACCGAAGGCCTCGCCCTGATCGACAAGGCCATGCGCCACCGCCGGCCCGGCG
CCTATCAGGTGCAGGCGGCCATCGCCGCCCTCCATGCCCGCGCGCCCCGGCCGGAGGAGACGGACTGGGCGCAGATCGAC
GCGCTCTATGCGACGCTGGAATATCTCCAGCCCTCCCCCGTGGTCACCCTCAACCGCGCCGTGGCGGTGAACAAGGTGAG
GGGCGCCGCGGCGGCCCTTGCCATGATCGAGCCGTTAGCGCCGCAGCTCTCGGGTTATTTCCACTATTTCGGCGCCCGTG
GCGCCTTCCTGCTGGAGCTGGGCCGGAGGGTGGAGGCGCGGGAAGCCTTCGACCGTGCGATCGCCCTCGCCAACACACCC
GCCGAGGCCGACCACATCCGCACCCATCTCGACCGGCTGATGGCCGAGGCCGGGACCTGA

Upstream 100 bases:

>100_bases
ACGCGCTCGCCATCGCCCGCGACCTCGCCGCCGCCAATCCCGGCGGCGCCTATGAGATCCGGCCGGTGGGCATGTTCTTT
CCGGACCAGCGAGTGGCGCC

Downstream 100 bases:

>100_bases
AAAAGTTCGCGGCCGGCTGTCGGGATGCCGGCCCGGGGGACGTTCTTGCAGCACGGGCGCCCCCTTTCCGGGGCTCCAGC
AGGAGGAAAACCATGTCCGA

Product: RNA polymerase ECF-subfamily sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MTTSALGDAAWINTALTAARPQAVAALLRYFRDLDTAEEAFQEACLRALKTWPVNGPPRDPAAWLILVGRNAALDGVRKR
ARHDPLPPDEQLSDLDDAEAGLAERLDNSHYRDDVLRLLFICCHPELPVTQQIALALRIVSGLSVKQIARAFLVSEAAME
QRITRAKGRIAKADVPFEAPGPVERAERLGTVAAMVYLVFNEGYSAGPDPDRAALCDDAIRLARLLLRLFPTEPEIMGLN
ALLLLQHARAAARFDADGRVILLDAQDRTRWDRTRITEGLALIDKAMRHRRPGAYQVQAAIAALHARAPRPEETDWAQID
ALYATLEYLQPSPVVTLNRAVAVNKVRGAAAALAMIEPLAPQLSGYFHYFGARGAFLLELGRRVEAREAFDRAIALANTP
AEADHIRTHLDRLMAEAGT

Sequences:

>Translated_419_residues
MTTSALGDAAWINTALTAARPQAVAALLRYFRDLDTAEEAFQEACLRALKTWPVNGPPRDPAAWLILVGRNAALDGVRKR
ARHDPLPPDEQLSDLDDAEAGLAERLDNSHYRDDVLRLLFICCHPELPVTQQIALALRIVSGLSVKQIARAFLVSEAAME
QRITRAKGRIAKADVPFEAPGPVERAERLGTVAAMVYLVFNEGYSAGPDPDRAALCDDAIRLARLLLRLFPTEPEIMGLN
ALLLLQHARAAARFDADGRVILLDAQDRTRWDRTRITEGLALIDKAMRHRRPGAYQVQAAIAALHARAPRPEETDWAQID
ALYATLEYLQPSPVVTLNRAVAVNKVRGAAAALAMIEPLAPQLSGYFHYFGARGAFLLELGRRVEAREAFDRAIALANTP
AEADHIRTHLDRLMAEAGT
>Mature_418_residues
TTSALGDAAWINTALTAARPQAVAALLRYFRDLDTAEEAFQEACLRALKTWPVNGPPRDPAAWLILVGRNAALDGVRKRA
RHDPLPPDEQLSDLDDAEAGLAERLDNSHYRDDVLRLLFICCHPELPVTQQIALALRIVSGLSVKQIARAFLVSEAAMEQ
RITRAKGRIAKADVPFEAPGPVERAERLGTVAAMVYLVFNEGYSAGPDPDRAALCDDAIRLARLLLRLFPTEPEIMGLNA
LLLLQHARAAARFDADGRVILLDAQDRTRWDRTRITEGLALIDKAMRHRRPGAYQVQAAIAALHARAPRPEETDWAQIDA
LYATLEYLQPSPVVTLNRAVAVNKVRGAAAALAMIEPLAPQLSGYFHYFGARGAFLLELGRRVEAREAFDRAIALANTPA
EADHIRTHLDRLMAEAGT

Specific function: Unknown

COG id: COG4941

COG function: function code K; Predicted RNA polymerase sigma factor containing a TPR repeat domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008940
- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 46037; Mature: 45906

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTSALGDAAWINTALTAARPQAVAALLRYFRDLDTAEEAFQEACLRALKTWPVNGPPRD
CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCC
PAAWLILVGRNAALDGVRKRARHDPLPPDEQLSDLDDAEAGLAERLDNSHYRDDVLRLLF
CCEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
ICCHPELPVTQQIALALRIVSGLSVKQIARAFLVSEAAMEQRITRAKGRIAKADVPFEAP
HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCC
GPVERAERLGTVAAMVYLVFNEGYSAGPDPDRAALCDDAIRLARLLLRLFPTEPEIMGLN
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCHH
ALLLLQHARAAARFDADGRVILLDAQDRTRWDRTRITEGLALIDKAMRHRRPGAYQVQAA
HHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
IAALHARAPRPEETDWAQIDALYATLEYLQPSPVVTLNRAVAVNKVRGAAAALAMIEPLA
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
PQLSGYFHYFGARGAFLLELGRRVEAREAFDRAIALANTPAEADHIRTHLDRLMAEAGT
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TTSALGDAAWINTALTAARPQAVAALLRYFRDLDTAEEAFQEACLRALKTWPVNGPPRD
CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCC
PAAWLILVGRNAALDGVRKRARHDPLPPDEQLSDLDDAEAGLAERLDNSHYRDDVLRLLF
CCEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
ICCHPELPVTQQIALALRIVSGLSVKQIARAFLVSEAAMEQRITRAKGRIAKADVPFEAP
HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCC
GPVERAERLGTVAAMVYLVFNEGYSAGPDPDRAALCDDAIRLARLLLRLFPTEPEIMGLN
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCHH
ALLLLQHARAAARFDADGRVILLDAQDRTRWDRTRITEGLALIDKAMRHRRPGAYQVQAA
HHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
IAALHARAPRPEETDWAQIDALYATLEYLQPSPVVTLNRAVAVNKVRGAAAALAMIEPLA
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
PQLSGYFHYFGARGAFLLELGRRVEAREAFDRAIALANTPAEADHIRTHLDRLMAEAGT
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430; 7751302 [H]