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The map label for this gene is nodB [H]

Identifier: 154248004

GI number: 154248004

Start: 4520664

End: 4521476

Strand: Reverse

Name: nodB [H]

Synonym: Xaut_4083

Alternate gene names: 154248004

Gene position: 4521476-4520664 (Counterclockwise)

Preceding gene: 154248008

Following gene: 154248003

Centisome position: 85.17

GC content: 69.74

Gene sequence:

>813_bases
ATGGCGACGAATGCAGGGGAAATCGGCGGCATGGTCTCCTTCATACGGCGCGTGGCGGTGCTTCTCGGCCTGCTCCTCCC
CCTTAGCGTCACGGGCGCGCACGCCGCCGACCCCTGCCCCGGGCGCGCCGACGCTCTCGGCACTGCGCGGGTCCTGGAGC
TCGACCCCAAGGGCGTGCGGGTGGGAACCAAGTCGTTTCCCGCCACCCTGCCGCTGGCGCCCAAGGAAGTGGTGCTGACC
TTCGATGACGGCCCCTGGCCCAGGACCACCGCCGCCGTCCTCGACGCCCTGAAGGCAGAGTGCGTCCACGCCACCTTCTT
CCTCATCGGCGAGAATGCGAAGGCCCGTCCCGAGCTGGTGCGCCGCGCCCTGGCCGAGGGCCACACCATCGCTCACCACA
CCCTCACCCACCCCACCGCGACCCTGGCCAAAATCCCGTTCGAGGCAGCGGTGAAGGAGATCGAGCGCGGCATCGCCGCC
GACGAAAAGGCTGCCTATGGCGCCAGCGGGCCGGCGCCCCGCGTGCCCTTCTTCCGCTTCCCCGGCTTTGCCTCGACGCC
CGAGCTGCTGACCTATCTGGACGGCAAGGGCATCGCCGTGTTCGGCGCCGACTTCTGGGCCAGCGACTGGAACGTGATGA
CCCCCGAGGCGGAGCTGGACCTGGTGCTGAAGCGGCTTGACGCGGCGGGGGGTGGCATCGTGCTGTTCCACGACACAAAG
AGCTACACTGCGGCCATGATTCCCGGCTTCCTGCGCGCCCTCGCCGAGCGCGGCTACAAGGTGGTGCACGTGGTGCCGAA
AGCGCCCGGGTGA

Upstream 100 bases:

>100_bases
TTTCTCCCGACTGCGGACTTAAAGCGGAATATCATCAGCCTGCACTGCAGGAGTGTCGTACAACTTATTGTTATAATTTA
GTTTTTGTAGGATCTAGCGC

Downstream 100 bases:

>100_bases
GCACCCGGAAACCCGAGGCGCTCAAAGTCCGTCGATTTCCCGAAACAGGGAAGGCCTTACCCCGGCCTTACCCACGAGGG
TCGGGCCAAAAGAAAACGGC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MATNAGEIGGMVSFIRRVAVLLGLLLPLSVTGAHAADPCPGRADALGTARVLELDPKGVRVGTKSFPATLPLAPKEVVLT
FDDGPWPRTTAAVLDALKAECVHATFFLIGENAKARPELVRRALAEGHTIAHHTLTHPTATLAKIPFEAAVKEIERGIAA
DEKAAYGASGPAPRVPFFRFPGFASTPELLTYLDGKGIAVFGADFWASDWNVMTPEAELDLVLKRLDAAGGGIVLFHDTK
SYTAAMIPGFLRALAERGYKVVHVVPKAPG

Sequences:

>Translated_270_residues
MATNAGEIGGMVSFIRRVAVLLGLLLPLSVTGAHAADPCPGRADALGTARVLELDPKGVRVGTKSFPATLPLAPKEVVLT
FDDGPWPRTTAAVLDALKAECVHATFFLIGENAKARPELVRRALAEGHTIAHHTLTHPTATLAKIPFEAAVKEIERGIAA
DEKAAYGASGPAPRVPFFRFPGFASTPELLTYLDGKGIAVFGADFWASDWNVMTPEAELDLVLKRLDAAGGGIVLFHDTK
SYTAAMIPGFLRALAERGYKVVHVVPKAPG
>Mature_269_residues
ATNAGEIGGMVSFIRRVAVLLGLLLPLSVTGAHAADPCPGRADALGTARVLELDPKGVRVGTKSFPATLPLAPKEVVLTF
DDGPWPRTTAAVLDALKAECVHATFFLIGENAKARPELVRRALAEGHTIAHHTLTHPTATLAKIPFEAAVKEIERGIAAD
EKAAYGASGPAPRVPFFRFPGFASTPELLTYLDGKGIAVFGADFWASDWNVMTPEAELDLVLKRLDAAGGGIVLFHDTKS
YTAAMIPGFLRALAERGYKVVHVVPKAPG

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 28549; Mature: 28418

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATNAGEIGGMVSFIRRVAVLLGLLLPLSVTGAHAADPCPGRADALGTARVLELDPKGVR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEE
VGTKSFPATLPLAPKEVVLTFDDGPWPRTTAAVLDALKAECVHATFFLIGENAKARPELV
ECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHH
RRALAEGHTIAHHTLTHPTATLAKIPFEAAVKEIERGIAADEKAAYGASGPAPRVPFFRF
HHHHHCCCEEEEEECCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEC
PGFASTPELLTYLDGKGIAVFGADFWASDWNVMTPEAELDLVLKRLDAAGGGIVLFHDTK
CCCCCCHHHHHEECCCCEEEEECCCCCCCCEEECCCHHHHHHHHHHCCCCCCEEEEECCC
SYTAAMIPGFLRALAERGYKVVHVVPKAPG
CHHHHHHHHHHHHHHHCCCEEEEEECCCCC
>Mature Secondary Structure 
ATNAGEIGGMVSFIRRVAVLLGLLLPLSVTGAHAADPCPGRADALGTARVLELDPKGVR
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEE
VGTKSFPATLPLAPKEVVLTFDDGPWPRTTAAVLDALKAECVHATFFLIGENAKARPELV
ECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHH
RRALAEGHTIAHHTLTHPTATLAKIPFEAAVKEIERGIAADEKAAYGASGPAPRVPFFRF
HHHHHCCCEEEEEECCCCCHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEC
PGFASTPELLTYLDGKGIAVFGADFWASDWNVMTPEAELDLVLKRLDAAGGGIVLFHDTK
CCCCCCHHHHHEECCCCEEEEECCCCCCCCEEECCCHHHHHHHHHHCCCCCCEEEEECCC
SYTAAMIPGFLRALAERGYKVVHVVPKAPG
CHHHHHHHHHHHHHHHCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10474187 [H]