Click here to switch to the map view.

The map label for this gene is recO

Identifier: 154247809

GI number: 154247809

Start: 4306539

End: 4307267

Strand: Reverse

Name: recO

Synonym: Xaut_3886

Alternate gene names: 154247809

Gene position: 4307267-4306539 (Counterclockwise)

Preceding gene: 154247822

Following gene: 154247808

Centisome position: 81.13

GC content: 70.64

Gene sequence:

>729_bases
GTGGAATGGACCGACGAGGGCATCGTGCTGGGGGTGCGGCGGCACGGCGAGGGCAATGCCATCGTGGAATTGCTGACCCG
CCTGCGCGGCCGGCATCTCGGCATGGTGCGCGGCGGCGCCTCGCGGCGGCAGGCGCCCCTGCTCCAGCCCGGCAACACGG
TGAGCGCCACCTGGCGGGCGCGGCTCGACGAGCACATGGGCAATTATGCGCTGGAGCCGGCGGTGGTGCGCACCGAGGTG
CTCATGCGCGCGCCCCACGCCGCCTTCGGCTTCACCCATATGGCGCAGATCCTTCACCTGTTGCCGGAGCGTGATCCGCA
CGAAGGTCTGTTCCTCACCGTCGGCGCCATCCTGGACGCCTTCGAGAACCGAGAATCGGCAGGCCGGCTGCTCGCCCGCT
TTGAGCTGGCGTTGCTGGCGGAGCTGGGATTCGGGCTGGAGCTGGAAACCTGCGCCGCTACAGGACGCCGGGAGGACTTG
GTCTATGTCTCGCCGAAAAGCGGGCGGGCAGTCTGCGGGGAGGCGGGCGCGCCCTATGCGGATCGGCTGTTCGCCCTGCC
CCGCTTCCTGGTGGATGGCACCGCCCCGCCCGCCGGCGATGTGGAGGATGCGCTGCGCCTCACCGGCTACTTTCTGCTGA
CCCGGGTGCTGGAGCCGCGCGGGCTCGGCCTGTCCGATGCGCGCGCGGCCTTCATTTCAGCCTGGCGCCGGAGCATTGCC
CCAGCCTGA

Upstream 100 bases:

>100_bases
CGTTCATTGCCCGCAAGCGCGTGCGCCGTTTGGCCGGCATGGCAGGTGAGCGCAAGCGCACACCGTTTTCTCAACGTTTC
AGAGCCGGACAGGCAGCGCC

Downstream 100 bases:

>100_bases
GGCCATCACCAATAGCGGCGCGGACCCACCCACACATTCCGGCATCTGGTCACCCAATGGGGGCGCCCATTCCACCAGCG
GCGTTCCTGCCAGCACCGAC

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MEWTDEGIVLGVRRHGEGNAIVELLTRLRGRHLGMVRGGASRRQAPLLQPGNTVSATWRARLDEHMGNYALEPAVVRTEV
LMRAPHAAFGFTHMAQILHLLPERDPHEGLFLTVGAILDAFENRESAGRLLARFELALLAELGFGLELETCAATGRREDL
VYVSPKSGRAVCGEAGAPYADRLFALPRFLVDGTAPPAGDVEDALRLTGYFLLTRVLEPRGLGLSDARAAFISAWRRSIA
PA

Sequences:

>Translated_242_residues
MEWTDEGIVLGVRRHGEGNAIVELLTRLRGRHLGMVRGGASRRQAPLLQPGNTVSATWRARLDEHMGNYALEPAVVRTEV
LMRAPHAAFGFTHMAQILHLLPERDPHEGLFLTVGAILDAFENRESAGRLLARFELALLAELGFGLELETCAATGRREDL
VYVSPKSGRAVCGEAGAPYADRLFALPRFLVDGTAPPAGDVEDALRLTGYFLLTRVLEPRGLGLSDARAAFISAWRRSIA
PA
>Mature_242_residues
MEWTDEGIVLGVRRHGEGNAIVELLTRLRGRHLGMVRGGASRRQAPLLQPGNTVSATWRARLDEHMGNYALEPAVVRTEV
LMRAPHAAFGFTHMAQILHLLPERDPHEGLFLTVGAILDAFENRESAGRLLARFELALLAELGFGLELETCAATGRREDL
VYVSPKSGRAVCGEAGAPYADRLFALPRFLVDGTAPPAGDVEDALRLTGYFLLTRVLEPRGLGLSDARAAFISAWRRSIA
PA

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_XANP2 (A7IM67)

Other databases:

- EMBL:   CP000781
- RefSeq:   YP_001418767.1
- ProteinModelPortal:   A7IM67
- SMR:   A7IM67
- STRING:   A7IM67
- GeneID:   5421904
- GenomeReviews:   CP000781_GR
- KEGG:   xau:Xaut_3886
- eggNOG:   COG1381
- HOGENOM:   HBG474229
- OMA:   PERDPHP
- ProtClustDB:   CLSK980126
- BioCyc:   XAUT78245:XAUT_3886-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 26385; Mature: 26385

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWTDEGIVLGVRRHGEGNAIVELLTRLRGRHLGMVRGGASRRQAPLLQPGNTVSATWRA
CCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHH
RLDEHMGNYALEPAVVRTEVLMRAPHAAFGFTHMAQILHLLPERDPHEGLFLTVGAILDA
HHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHH
FENRESAGRLLARFELALLAELGFGLELETCAATGRREDLVYVSPKSGRAVCGEAGAPYA
HHCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCCCCCEEEECCCCCCEEECCCCCCHH
DRLFALPRFLVDGTAPPAGDVEDALRLTGYFLLTRVLEPRGLGLSDARAAFISAWRRSIA
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
PA
CC
>Mature Secondary Structure
MEWTDEGIVLGVRRHGEGNAIVELLTRLRGRHLGMVRGGASRRQAPLLQPGNTVSATWRA
CCCCCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHH
RLDEHMGNYALEPAVVRTEVLMRAPHAAFGFTHMAQILHLLPERDPHEGLFLTVGAILDA
HHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHH
FENRESAGRLLARFELALLAELGFGLELETCAATGRREDLVYVSPKSGRAVCGEAGAPYA
HHCHHHHHHHHHHHHHHHHHHHCCCCEEHHHHCCCCCCCEEEECCCCCCEEECCCCCCHH
DRLFALPRFLVDGTAPPAGDVEDALRLTGYFLLTRVLEPRGLGLSDARAAFISAWRRSIA
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
PA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA