| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is yjjK [C]
Identifier: 154247402
GI number: 154247402
Start: 3867192
End: 3868847
Strand: Direct
Name: yjjK [C]
Synonym: Xaut_3474
Alternate gene names: 154247402
Gene position: 3867192-3868847 (Clockwise)
Preceding gene: 154247400
Following gene: 154247403
Centisome position: 72.84
GC content: 65.34
Gene sequence:
>1656_bases ATGGCGCCCTATCAGTATGCCTATCATATGCACGGCATGACCAAGGCCTATCCGGGCGGCAAGAAGGTGCTCGACAACGT GCATCTGTCTTTCTACCCGGACGCCAAGATCGGCGTGCTCGGCAACAACGGCGCCGGCAAGTCGACCCTGCTGCGCATCA TGGCCGGCATGGACAAGGATTTCACCGGCGAGGCGCGCCCGGCCGAGGGCGTGCGCGTGGGCTACCTGCCGCAGGAGCCC CATCTCGATCCCGAGAAGACCGTGCGCCAGAATGTCGAGGACGGCGTGGCCAAGCAGAAGGCCATCATGGAGCGCTACAA CGAGCTCGCCATGAACTACTCGGACGAGACCGCCGACGAGATGACCCGCCTGCAGGACGAGATCGAGGCCCAGGGCCTGT GGGATCTCGACAGCAAGGTGGAGCAGGCCATGAACGCGCTGGGCTGCCCGCCGGACGACTGGGAGGTGACCCGCCTCTCC GGCGGCGAGCGGCGCCGCGTGGCCCTGTGCCGGCTGCTGCTGGAGCAGCCCGAGCTGCTGCTGCTCGACGAGCCCACCAA CCATCTGGACGCTGAGACGGTGAACTGGCTGGAAGGCCATCTGCGGACCTATCCGGGCGCCATCCTGATCGTCACCCATG ATCGCTACTTCCTCGACAATGTCACCGGCTGGATCCTGGAGCTGGATCGCGGCCGTGGCATTCCCTACGAGGGCAATTAT TCGTCCTGGCTCGGCCAGAAGCAGAAGCGCCTGCAGCAGGAGGGCCGCGAGGACGAGGCCCGCCAGCGCGCCCTCGCCCG CGAGCAGGAGTGGATCGGCGCCAGCCCCAAGGCGCGGCAGGCCAAGAACAAGGCCCGCATCCAGCGCTATGACGAGCTGG TGGCGAAGGCTTCCGAGCGGCAGCCCTCGGCGACCGAGATCGTCATCCCGGTGGCCGAGCGCCTCGGTCAGAACGTCATC GCCTTCGATCATCTCAGCAAGTCGTTCGGCGACAAGATGCTGATCGACGATCTGTCGTTCAAGCTGCCGCCGGGCGGCAT CGTGGGCGTCATCGGGCCGAACGGCGCGGGCAAGACCACGCTGTTCCGCATGATCACGGGCCAGGAGAAGCCGGACGGCG GCACCATCGAGATCGGCGAGAGCGTGAAGCTCGGCTATGTGGACCAGAGCCGCGACGCGCTCGATGACAAGAAGACCGTG TGGGAGGAAATCTCCGACGGCAATGAGGTAATCTACGTCGGCAAGCGGGAGATCCCCTCGCGCGCCTATTGCGCGGCCTT CAACTTCAAGGGCGGCGACCAGCAGAAGAAGGTGGGCATGCTTTCGGGCGGCGAGCGCAACCGCGTGCACCTCGCCAAGG TGCTCCAGCGCGGCGGCAACGTGCTGCTGCTCGACGAGCCCACCAACGACCTCGACGTGGAAACCCTGCGCGCCCTGGAA GAGGCGCTGGAGGATTATGCCGGCTGCGCCGTCATCATCTCCCATGACCGCTTCTTCCTGGACCGCATCGCTACCCACAT GCTGGCCTTCGAGGGCGACAGCCACGTGGAATGGTTCGAGGGCAACTTCGCCGACTACGAGGAAGACAAGAAGCGCCGCC TGGGCATCGACTCGGTCATCCCGAAGCGCATCCAGTACAAGAAGTTTTCGAGGTGA
Upstream 100 bases:
>100_bases GTCGCCGAGGGCCCTTGAGGCCCCATTCCCTTGCCGCGCCGCCGCGCGAGGGCTAGAACGGCGCCAACTCAACGCATCCC TTTTCAGGAGACGGCGGCTC
Downstream 100 bases:
>100_bases GGGGAGGGGGAGATCAACTGATCTCCCCCTCTTTATGATTGCTCGTCACCGCTGAATTTACTTTTCGGTTGTTGGTAAAA CGGTGGGCGAGGTGGCTGCG
Product: putative ABC transporter ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 551; Mature: 550
Protein sequence:
>551_residues MAPYQYAYHMHGMTKAYPGGKKVLDNVHLSFYPDAKIGVLGNNGAGKSTLLRIMAGMDKDFTGEARPAEGVRVGYLPQEP HLDPEKTVRQNVEDGVAKQKAIMERYNELAMNYSDETADEMTRLQDEIEAQGLWDLDSKVEQAMNALGCPPDDWEVTRLS GGERRRVALCRLLLEQPELLLLDEPTNHLDAETVNWLEGHLRTYPGAILIVTHDRYFLDNVTGWILELDRGRGIPYEGNY SSWLGQKQKRLQQEGREDEARQRALAREQEWIGASPKARQAKNKARIQRYDELVAKASERQPSATEIVIPVAERLGQNVI AFDHLSKSFGDKMLIDDLSFKLPPGGIVGVIGPNGAGKTTLFRMITGQEKPDGGTIEIGESVKLGYVDQSRDALDDKKTV WEEISDGNEVIYVGKREIPSRAYCAAFNFKGGDQQKKVGMLSGGERNRVHLAKVLQRGGNVLLLDEPTNDLDVETLRALE EALEDYAGCAVIISHDRFFLDRIATHMLAFEGDSHVEWFEGNFADYEEDKKRRLGIDSVIPKRIQYKKFSR
Sequences:
>Translated_551_residues MAPYQYAYHMHGMTKAYPGGKKVLDNVHLSFYPDAKIGVLGNNGAGKSTLLRIMAGMDKDFTGEARPAEGVRVGYLPQEP HLDPEKTVRQNVEDGVAKQKAIMERYNELAMNYSDETADEMTRLQDEIEAQGLWDLDSKVEQAMNALGCPPDDWEVTRLS GGERRRVALCRLLLEQPELLLLDEPTNHLDAETVNWLEGHLRTYPGAILIVTHDRYFLDNVTGWILELDRGRGIPYEGNY SSWLGQKQKRLQQEGREDEARQRALAREQEWIGASPKARQAKNKARIQRYDELVAKASERQPSATEIVIPVAERLGQNVI AFDHLSKSFGDKMLIDDLSFKLPPGGIVGVIGPNGAGKTTLFRMITGQEKPDGGTIEIGESVKLGYVDQSRDALDDKKTV WEEISDGNEVIYVGKREIPSRAYCAAFNFKGGDQQKKVGMLSGGERNRVHLAKVLQRGGNVLLLDEPTNDLDVETLRALE EALEDYAGCAVIISHDRFFLDRIATHMLAFEGDSHVEWFEGNFADYEEDKKRRLGIDSVIPKRIQYKKFSR >Mature_550_residues APYQYAYHMHGMTKAYPGGKKVLDNVHLSFYPDAKIGVLGNNGAGKSTLLRIMAGMDKDFTGEARPAEGVRVGYLPQEPH LDPEKTVRQNVEDGVAKQKAIMERYNELAMNYSDETADEMTRLQDEIEAQGLWDLDSKVEQAMNALGCPPDDWEVTRLSG GERRRVALCRLLLEQPELLLLDEPTNHLDAETVNWLEGHLRTYPGAILIVTHDRYFLDNVTGWILELDRGRGIPYEGNYS SWLGQKQKRLQQEGREDEARQRALAREQEWIGASPKARQAKNKARIQRYDELVAKASERQPSATEIVIPVAERLGQNVIA FDHLSKSFGDKMLIDDLSFKLPPGGIVGVIGPNGAGKTTLFRMITGQEKPDGGTIEIGESVKLGYVDQSRDALDDKKTVW EEISDGNEVIYVGKREIPSRAYCAAFNFKGGDQQKKVGMLSGGERNRVHLAKVLQRGGNVLLLDEPTNDLDVETLRALEE ALEDYAGCAVIISHDRFFLDRIATHMLAFEGDSHVEWFEGNFADYEEDKKRRLGIDSVIPKRIQYKKFSR
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=506, Percent_Identity=29.6442687747036, Blast_Score=194, Evalue=2e-49, Organism=Homo sapiens, GI10947135, Length=555, Percent_Identity=28.8288288288288, Blast_Score=175, Evalue=1e-43, Organism=Homo sapiens, GI69354671, Length=555, Percent_Identity=28.8288288288288, Blast_Score=174, Evalue=1e-43, Organism=Homo sapiens, GI10947137, Length=535, Percent_Identity=26.9158878504673, Blast_Score=172, Evalue=7e-43, Organism=Homo sapiens, GI27881506, Length=528, Percent_Identity=27.0833333333333, Blast_Score=172, Evalue=8e-43, Organism=Homo sapiens, GI31657092, Length=197, Percent_Identity=28.4263959390863, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI30795238, Length=179, Percent_Identity=29.608938547486, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI27881501, Length=179, Percent_Identity=29.608938547486, Blast_Score=71, Evalue=2e-12, Organism=Homo sapiens, GI156105685, Length=221, Percent_Identity=28.5067873303167, Blast_Score=71, Evalue=3e-12, Organism=Homo sapiens, GI9955963, Length=204, Percent_Identity=27.4509803921569, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI4506341, Length=202, Percent_Identity=26.7326732673267, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI153792144, Length=199, Percent_Identity=30.1507537688442, Blast_Score=67, Evalue=5e-11, Organism=Escherichia coli, GI2367384, Length=553, Percent_Identity=57.6853526220615, Blast_Score=666, Evalue=0.0, Organism=Escherichia coli, GI1787182, Length=525, Percent_Identity=35.6190476190476, Blast_Score=317, Evalue=1e-87, Organism=Escherichia coli, GI1789751, Length=520, Percent_Identity=31.7307692307692, Blast_Score=253, Evalue=3e-68, Organism=Escherichia coli, GI1787041, Length=529, Percent_Identity=30.4347826086957, Blast_Score=224, Evalue=1e-59, Organism=Escherichia coli, GI48994943, Length=502, Percent_Identity=23.3067729083665, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI87081782, Length=566, Percent_Identity=23.1448763250883, Blast_Score=94, Evalue=3e-20, Organism=Escherichia coli, GI87081709, Length=195, Percent_Identity=30.7692307692308, Blast_Score=89, Evalue=7e-19, Organism=Escherichia coli, GI1788165, Length=187, Percent_Identity=33.1550802139037, Blast_Score=88, Evalue=1e-18, Organism=Escherichia coli, GI1788761, Length=198, Percent_Identity=33.8383838383838, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1788225, Length=245, Percent_Identity=29.3877551020408, Blast_Score=84, Evalue=2e-17, Organism=Escherichia coli, GI1787712, Length=191, Percent_Identity=31.413612565445, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI87081791, Length=195, Percent_Identity=32.3076923076923, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI1789873, Length=218, Percent_Identity=27.9816513761468, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1787105, Length=221, Percent_Identity=28.5067873303167, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787029, Length=240, Percent_Identity=29.5833333333333, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1787164, Length=189, Percent_Identity=26.4550264550265, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1790525, Length=254, Percent_Identity=26.3779527559055, Blast_Score=69, Evalue=7e-13, Organism=Escherichia coli, GI1789891, Length=232, Percent_Identity=25.8620689655172, Blast_Score=69, Evalue=9e-13, Organism=Escherichia coli, GI1789864, Length=214, Percent_Identity=26.1682242990654, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1786563, Length=192, Percent_Identity=28.125, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1788450, Length=210, Percent_Identity=27.6190476190476, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787758, Length=190, Percent_Identity=28.9473684210526, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1790467, Length=163, Percent_Identity=31.9018404907975, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1786319, Length=225, Percent_Identity=27.1111111111111, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1789593, Length=219, Percent_Identity=28.7671232876712, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI48995001, Length=240, Percent_Identity=28.3333333333333, Blast_Score=66, Evalue=7e-12, Organism=Escherichia coli, GI1787370, Length=217, Percent_Identity=28.110599078341, Blast_Score=65, Evalue=9e-12, Organism=Escherichia coli, GI87082267, Length=207, Percent_Identity=26.0869565217391, Blast_Score=65, Evalue=1e-11, Organism=Escherichia coli, GI1789991, Length=219, Percent_Identity=26.9406392694064, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI1788210, Length=221, Percent_Identity=23.5294117647059, Blast_Score=64, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17559834, Length=546, Percent_Identity=28.2051282051282, Blast_Score=209, Evalue=3e-54, Organism=Caenorhabditis elegans, GI17553372, Length=538, Percent_Identity=29.9256505576208, Blast_Score=206, Evalue=2e-53, Organism=Caenorhabditis elegans, GI17555318, Length=538, Percent_Identity=26.0223048327138, Blast_Score=178, Evalue=6e-45, Organism=Caenorhabditis elegans, GI17542146, Length=196, Percent_Identity=25, Blast_Score=70, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193211017, Length=187, Percent_Identity=25.1336898395722, Blast_Score=66, Evalue=6e-11, Organism=Caenorhabditis elegans, GI193211015, Length=187, Percent_Identity=25.1336898395722, Blast_Score=66, Evalue=6e-11, Organism=Caenorhabditis elegans, GI71996809, Length=187, Percent_Identity=25.1336898395722, Blast_Score=65, Evalue=7e-11, Organism=Caenorhabditis elegans, GI25146777, Length=203, Percent_Identity=28.0788177339901, Blast_Score=65, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6321121, Length=541, Percent_Identity=28.2809611829945, Blast_Score=196, Evalue=8e-51, Organism=Saccharomyces cerevisiae, GI6320874, Length=528, Percent_Identity=29.5454545454545, Blast_Score=191, Evalue=2e-49, Organism=Saccharomyces cerevisiae, GI6324314, Length=375, Percent_Identity=26.1333333333333, Blast_Score=108, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6323278, Length=374, Percent_Identity=25.1336898395722, Blast_Score=108, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6325030, Length=372, Percent_Identity=26.3440860215054, Blast_Score=105, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6320266, Length=532, Percent_Identity=23.8721804511278, Blast_Score=90, Evalue=9e-19, Organism=Saccharomyces cerevisiae, GI6323959, Length=209, Percent_Identity=28.7081339712919, Blast_Score=68, Evalue=3e-12, Organism=Drosophila melanogaster, GI24666836, Length=548, Percent_Identity=30.4744525547445, Blast_Score=201, Evalue=9e-52, Organism=Drosophila melanogaster, GI24641342, Length=542, Percent_Identity=29.3357933579336, Blast_Score=197, Evalue=1e-50, Organism=Drosophila melanogaster, GI24642252, Length=544, Percent_Identity=26.2867647058824, Blast_Score=190, Evalue=3e-48, Organism=Drosophila melanogaster, GI18859989, Length=544, Percent_Identity=26.2867647058824, Blast_Score=190, Evalue=3e-48, Organism=Drosophila melanogaster, GI24666092, Length=207, Percent_Identity=29.4685990338164, Blast_Score=73, Evalue=5e-13, Organism=Drosophila melanogaster, GI21357907, Length=196, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI221512771, Length=170, Percent_Identity=31.7647058823529, Blast_Score=67, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022374 - InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 61979; Mature: 61848
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPYQYAYHMHGMTKAYPGGKKVLDNVHLSFYPDAKIGVLGNNGAGKSTLLRIMAGMDKD CCCCCHHHHHCCCCCCCCCCHHHHHCCCEEEECCCEEEEEECCCCCHHHHHHHHHCCCCC FTGEARPAEGVRVGYLPQEPHLDPEKTVRQNVEDGVAKQKAIMERYNELAMNYSDETADE CCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH MTRLQDEIEAQGLWDLDSKVEQAMNALGCPPDDWEVTRLSGGERRRVALCRLLLEQPELL HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCEE LLDEPTNHLDAETVNWLEGHLRTYPGAILIVTHDRYFLDNVTGWILELDRGRGIPYEGNY EEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCEEEEEEECCCCCCCCCCH SSWLGQKQKRLQQEGREDEARQRALAREQEWIGASPKARQAKNKARIQRYDELVAKASER HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC QPSATEIVIPVAERLGQNVIAFDHLSKSFGDKMLIDDLSFKLPPGGIVGVIGPNGAGKTT CCCCCEEEEEHHHHCCCCEEEHHHHHHHHCCCEEECCCCCCCCCCCEEEEECCCCCCHHH LFRMITGQEKPDGGTIEIGESVKLGYVDQSRDALDDKKTVWEEISDGNEVIYVGKREIPS EEEEECCCCCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC RAYCAAFNFKGGDQQKKVGMLSGGERNRVHLAKVLQRGGNVLLLDEPTNDLDVETLRALE CEEEEEECCCCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH EALEDYAGCAVIISHDRFFLDRIATHMLAFEGDSHVEWFEGNFADYEEDKKRRLGIDSVI HHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHCCCHHHH PKRIQYKKFSR HHHHHHHHCCC >Mature Secondary Structure APYQYAYHMHGMTKAYPGGKKVLDNVHLSFYPDAKIGVLGNNGAGKSTLLRIMAGMDKD CCCCHHHHHCCCCCCCCCCHHHHHCCCEEEECCCEEEEEECCCCCHHHHHHHHHCCCCC FTGEARPAEGVRVGYLPQEPHLDPEKTVRQNVEDGVAKQKAIMERYNELAMNYSDETADE CCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH MTRLQDEIEAQGLWDLDSKVEQAMNALGCPPDDWEVTRLSGGERRRVALCRLLLEQPELL HHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCEE LLDEPTNHLDAETVNWLEGHLRTYPGAILIVTHDRYFLDNVTGWILELDRGRGIPYEGNY EEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHCCCEEEEEEECCCCCCCCCCH SSWLGQKQKRLQQEGREDEARQRALAREQEWIGASPKARQAKNKARIQRYDELVAKASER HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCC QPSATEIVIPVAERLGQNVIAFDHLSKSFGDKMLIDDLSFKLPPGGIVGVIGPNGAGKTT CCCCCEEEEEHHHHCCCCEEEHHHHHHHHCCCEEECCCCCCCCCCCEEEEECCCCCCHHH LFRMITGQEKPDGGTIEIGESVKLGYVDQSRDALDDKKTVWEEISDGNEVIYVGKREIPS EEEEECCCCCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCC RAYCAAFNFKGGDQQKKVGMLSGGERNRVHLAKVLQRGGNVLLLDEPTNDLDVETLRALE CEEEEEECCCCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH EALEDYAGCAVIISHDRFFLDRIATHMLAFEGDSHVEWFEGNFADYEEDKKRRLGIDSVI HHHHHHCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHCCCHHHH PKRIQYKKFSR HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800; 10675023 [H]