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The map label for this gene is rnk [H]

Identifier: 154246864

GI number: 154246864

Start: 3253673

End: 3254104

Strand: Reverse

Name: rnk [H]

Synonym: Xaut_2929

Alternate gene names: 154246864

Gene position: 3254104-3253673 (Counterclockwise)

Preceding gene: 154246867

Following gene: 154246863

Centisome position: 61.29

GC content: 67.13

Gene sequence:

>432_bases
ATGATGAAAAAGCAATCCAGATCTCAATCGAGGTCCCCTCGCCTGCCCGCGCTCGTTCTGAGCCATCCGGACCACGAACG
CCTCGCTGGCCTCGCTACAGCCGCGCTCGACCGCATTCCCGACGTGGCGGAGGAGCTTCTCGCCGAGCTGGACCGGGCGC
GTCTGGTCCCCATCGGCCGCGTCCCCGCCACCGCCGTGCAGATGGGCTCCAAAGTCACCTACGAAGCGGGCGGCAACGCG
CGCACCGTGACACTGGTCTATCCGGAAGACGCGGACATCGCCGCCGCCAGGGTGTCGGTGATGACGCCCATCGGCGCCGC
CCTGATCGGGCTCTCCAAAGGCCAGTCCATCTGCTGGACGGCCCGTGACGGTCGCCGCCACGAGTTGAAGGTCATCGAGG
TCCAGCCACCGGAGGGGAAAACGCTCCTCTGA

Upstream 100 bases:

>100_bases
CCGATGACGGCGCCCCAAGCCTTCCCATTCCCCAAGCCTTGCCCGCGCTGCCGCTCGACCGTGGCCGCGCGATGCCGGCA
GTCCTTTGACGACGACACCC

Downstream 100 bases:

>100_bases
CCTCTTGCGTCTTCACCGGTCTGATCGTTGCACCCGGTTGCACGACCTCCAGACGGATCCGGCGGGAGCCAGAGGCGGCT
CCCGCCCACCTCGGGACGGT

Product: nucleoside diphosphate kinase regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MMKKQSRSQSRSPRLPALVLSHPDHERLAGLATAALDRIPDVAEELLAELDRARLVPIGRVPATAVQMGSKVTYEAGGNA
RTVTLVYPEDADIAAARVSVMTPIGAALIGLSKGQSICWTARDGRRHELKVIEVQPPEGKTLL

Sequences:

>Translated_143_residues
MMKKQSRSQSRSPRLPALVLSHPDHERLAGLATAALDRIPDVAEELLAELDRARLVPIGRVPATAVQMGSKVTYEAGGNA
RTVTLVYPEDADIAAARVSVMTPIGAALIGLSKGQSICWTARDGRRHELKVIEVQPPEGKTLL
>Mature_143_residues
MMKKQSRSQSRSPRLPALVLSHPDHERLAGLATAALDRIPDVAEELLAELDRARLVPIGRVPATAVQMGSKVTYEAGGNA
RTVTLVYPEDADIAAARVSVMTPIGAALIGLSKGQSICWTARDGRRHELKVIEVQPPEGKTLL

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=123, Percent_Identity=36.5853658536585, Blast_Score=68, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 15369; Mature: 15369

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKKQSRSQSRSPRLPALVLSHPDHERLAGLATAALDRIPDVAEELLAELDRARLVPIGR
CCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCC
VPATAVQMGSKVTYEAGGNARTVTLVYPEDADIAAARVSVMTPIGAALIGLSKGQSICWT
CCHHHHHCCCEEEEECCCCEEEEEEECCCCCCHHHHHHHHHCCHHHHHEECCCCCEEEEE
ARDGRRHELKVIEVQPPEGKTLL
ECCCCCCEEEEEEEECCCCCCCC
>Mature Secondary Structure
MMKKQSRSQSRSPRLPALVLSHPDHERLAGLATAALDRIPDVAEELLAELDRARLVPIGR
CCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCC
VPATAVQMGSKVTYEAGGNARTVTLVYPEDADIAAARVSVMTPIGAALIGLSKGQSICWT
CCHHHHHCCCEEEEECCCCEEEEEEECCCCCCHHHHHHHHHCCHHHHHEECCCCCEEEEE
ARDGRRHELKVIEVQPPEGKTLL
ECCCCCCEEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]