| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is fct [H]
Identifier: 154246718
GI number: 154246718
Start: 3076603
End: 3079194
Strand: Direct
Name: fct [H]
Synonym: Xaut_2779
Alternate gene names: 154246718
Gene position: 3076603-3079194 (Clockwise)
Preceding gene: 154246717
Following gene: 154246719
Centisome position: 57.95
GC content: 64.35
Gene sequence:
>2592_bases ATGCTGGACTATCACTGTCGTCGGCCGTCGCGCGTGAGCGGCAAGGCCATCCGTCTCGGCCTGGGCCTCGCCCTTTTGGC CAGCACGGCCCTTTCGTCGGCCTTCACCGGTTCGGCGGCCATGGCGCAGCAGACGGCGGCGATCGCCTTCGCCATCCCGC CGTCCTCCCTCACTTCGGCCCTCACGGCATTCGGTGATCGCGCCAATCTTCAGGTGCTCTACGCGGCGGATCTGGCACGC GGCGTCCAGTCGCCCGGCGTGTCCGGCACCCTGGCGCCGGCGCAGGCACTGTCCCGCCTGCTGGCGGGCACCGGCCTCAC CTATCGGTTCACCAGCGCCAACACGGTCACCATCGCCCGGCCGGCGGAGAGCGGCGGCGCGGCGCTGCCGGAAGGCGGCA TCCAGCTCGATACCGTGACGGTGGAGGCGGACGGCGTCGCCGGCCCCTTCGTGGCCGTCGACACCTCCACCGGCATGAAG ATGGATGTGCCGCTGCGCGAGGTTCCCCAATCGGTCTCGGTGGTGACACGCCAGCAGATGGATGATCGCGGGGTGCAGAC CCTGAGCGATGCCATCGACTATTCGGCGGGTGTCTCGGCCTCGCCCTACGGGCAGGACAATCGCTTCGAGCAGTTCGTCA TCCGCGGCTTCGACGAGAACCTGCTGGGCGTCTATCGCGACGGCATGCGCATGCCCACGGCCGGCTTCGCCGGCTTCCGC CAGGAGCCCTATGGCCTGGCCCGCGTGGACATCCTGCGCGGCCCGACCTCCACGCTCTATGGCCTCAACAATCCAGGCGG CCTGGTCAATCTGGTCTCCAAGCTGCCGGTGGTCGGCGCGCAGTTCGGCGAGATCTGGGCCTCCTACGGCTCGTTCGACA ACCTCCAGACCGGCTTCGACATCAATGGCGCCGGCGTGGACGGTTCGAACATCACCTATCGCTTCACCGGGCTGGTGCGC GGGGCCGACACCCAGGTTGACTATGTGTCCAACGACCGCATCTACGTGGCGCCGACCCTGACGTGGACGCCCAATGCGAA CACCACCTTCACCGTGTTCGCCAACCTGCAGCAGGACCGCACCGGCGATACCTACCAGCTGCTGCCGGCGGAAGGCACGC TCTACCCCAGTGTCTACGGCAAGATCCCGCCCTCGCGCTTCCTCGGCGTGCCGGACTGGTCGAAGTATGATGCCACCCAG TATTCGGGCGGTTATTTCTTCGAGCACCGTGCCGACAACGGCTGGACGCTGCGACAGAACCTGCGCTACGCGTCGGTGGA CGTGGACTATCGCACCGCCTATCCCATCGCCGCCTATGGCGACACAACGACCCTGCTGCGCACCGCCCAGGAAAATAACC AGACGCTGGGCGTCTTCACCATCGACAACCAGGCCCAGTACGACAGCGATCTGGGGTTCGCCAAGAACCAGGTGGTATTC GGCCTCGACTATTCCAACACCCAGCAGGACGGCACCCAATATGGCGGCACGCTGCAGAGCCTCATCACGGGCTCCTCGCC GGTGGGGCCGATCAATCCCTATTTCCCCGTCTACGACAGCACCGTCGCGCCGCTGATCAATACCCTGAATACGTCCCAAA GTCTGAGCCAGACAGGCCTCTATGCCCAGGACATGTTCAAGCTCCACGACAAATGGGTGTTCACCTTCGGTGGTCGCTAC GACTGGGTTCAGACCGAAAGCTCGACGCAGAGCCCGGTGCTGGCGCAGCTCGCGCCGCTGCTGAATTATTATTACGGCGT CAACGTTCCGAGCACGTTCCAGACCAGCGCCAACAACGGCGCCTTCAGCGGCCGGGTCGGCCTGTCCTACCTGTTCGACA ATGGCATGACGCCCTATGCCAGCTATTCCAGCTCGTTCAACGTGGTGCCTGGCTTCACCCAGTCCAGCGTGACGGTGGAT ACGGACTATGGCCCGCTGCCCATCAGCTACAGCATGCAGCCGCTGAAGCCGGAAACCGGCGAGCAGTATGAAGTGGGCCT GAAATACCAGCCCAACAACGGCAAGAGCTATATCCAGACCTCGCTCTACCAGCTCACCAAGCAGAATGCGGTAAGCTTCG ACACCACCGACCCCATGCAGCAGGCCTATTACCAGACCGGCGAGGTCCAGGTACGGGGCTTCGAGGTGGAAGGCGCGGTG GATTTCGAGAACGGCTTCAAGCTCCTCGCCGCCTACACCTATCTGCATGCCGAGGTGACGGCGGACATTCCCCCGGTCGG TGAGCCGAGCATCGTGGGCAATACGCCGGAACGCGTGCCGGCGCATCTCGCCTCGGCGTGGCTCGACTACACCTTCCAGG ACGGTGCCTTGAAGGGCTTCGGCCTTGGCGGCGGCGTGCGCTACGTGGGCTCCACCTGGGGCGACCGCGAGAACACCATT TATGTGCCCAGCTACACGCTGGTGGACGCGGCAGTGCGCTACGCCAAGGACAGCTGGCTGTTCTCGCTCACCGCCAAGAA CCTGTTCGACAATGCTTATGTGGGCACCTGCTCCAGCATCGCGAATACCTATATCGGCTGCTCCTATGGGCAGACCCGTA CCATCACCGCGCAGGTGACTTACAAATGGTAG
Upstream 100 bases:
>100_bases AGGTCCCGGCCACCCCCGTCCGTCTCTGAGATATCGCGGCGATCGGTCTGGATTTTCCGGGTCGGCGCTGCCGCTCAGCT CATCGGGCTTTCGGGGTGCC
Downstream 100 bases:
>100_bases GTGACCTGCAAACAGCAGGGGAACTGCGCGCGGAAGCGGGGGAGCCGAAGGGCTTCGCGCTGGAGGGGGTCGGCTTTGCC GCCGAAGGCCGTCCGCTGCT
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 863; Mature: 863
Protein sequence:
>863_residues MLDYHCRRPSRVSGKAIRLGLGLALLASTALSSAFTGSAAMAQQTAAIAFAIPPSSLTSALTAFGDRANLQVLYAADLAR GVQSPGVSGTLAPAQALSRLLAGTGLTYRFTSANTVTIARPAESGGAALPEGGIQLDTVTVEADGVAGPFVAVDTSTGMK MDVPLREVPQSVSVVTRQQMDDRGVQTLSDAIDYSAGVSASPYGQDNRFEQFVIRGFDENLLGVYRDGMRMPTAGFAGFR QEPYGLARVDILRGPTSTLYGLNNPGGLVNLVSKLPVVGAQFGEIWASYGSFDNLQTGFDINGAGVDGSNITYRFTGLVR GADTQVDYVSNDRIYVAPTLTWTPNANTTFTVFANLQQDRTGDTYQLLPAEGTLYPSVYGKIPPSRFLGVPDWSKYDATQ YSGGYFFEHRADNGWTLRQNLRYASVDVDYRTAYPIAAYGDTTTLLRTAQENNQTLGVFTIDNQAQYDSDLGFAKNQVVF GLDYSNTQQDGTQYGGTLQSLITGSSPVGPINPYFPVYDSTVAPLINTLNTSQSLSQTGLYAQDMFKLHDKWVFTFGGRY DWVQTESSTQSPVLAQLAPLLNYYYGVNVPSTFQTSANNGAFSGRVGLSYLFDNGMTPYASYSSSFNVVPGFTQSSVTVD TDYGPLPISYSMQPLKPETGEQYEVGLKYQPNNGKSYIQTSLYQLTKQNAVSFDTTDPMQQAYYQTGEVQVRGFEVEGAV DFENGFKLLAAYTYLHAEVTADIPPVGEPSIVGNTPERVPAHLASAWLDYTFQDGALKGFGLGGGVRYVGSTWGDRENTI YVPSYTLVDAAVRYAKDSWLFSLTAKNLFDNAYVGTCSSIANTYIGCSYGQTRTITAQVTYKW
Sequences:
>Translated_863_residues MLDYHCRRPSRVSGKAIRLGLGLALLASTALSSAFTGSAAMAQQTAAIAFAIPPSSLTSALTAFGDRANLQVLYAADLAR GVQSPGVSGTLAPAQALSRLLAGTGLTYRFTSANTVTIARPAESGGAALPEGGIQLDTVTVEADGVAGPFVAVDTSTGMK MDVPLREVPQSVSVVTRQQMDDRGVQTLSDAIDYSAGVSASPYGQDNRFEQFVIRGFDENLLGVYRDGMRMPTAGFAGFR QEPYGLARVDILRGPTSTLYGLNNPGGLVNLVSKLPVVGAQFGEIWASYGSFDNLQTGFDINGAGVDGSNITYRFTGLVR GADTQVDYVSNDRIYVAPTLTWTPNANTTFTVFANLQQDRTGDTYQLLPAEGTLYPSVYGKIPPSRFLGVPDWSKYDATQ YSGGYFFEHRADNGWTLRQNLRYASVDVDYRTAYPIAAYGDTTTLLRTAQENNQTLGVFTIDNQAQYDSDLGFAKNQVVF GLDYSNTQQDGTQYGGTLQSLITGSSPVGPINPYFPVYDSTVAPLINTLNTSQSLSQTGLYAQDMFKLHDKWVFTFGGRY DWVQTESSTQSPVLAQLAPLLNYYYGVNVPSTFQTSANNGAFSGRVGLSYLFDNGMTPYASYSSSFNVVPGFTQSSVTVD TDYGPLPISYSMQPLKPETGEQYEVGLKYQPNNGKSYIQTSLYQLTKQNAVSFDTTDPMQQAYYQTGEVQVRGFEVEGAV DFENGFKLLAAYTYLHAEVTADIPPVGEPSIVGNTPERVPAHLASAWLDYTFQDGALKGFGLGGGVRYVGSTWGDRENTI YVPSYTLVDAAVRYAKDSWLFSLTAKNLFDNAYVGTCSSIANTYIGCSYGQTRTITAQVTYKW >Mature_863_residues MLDYHCRRPSRVSGKAIRLGLGLALLASTALSSAFTGSAAMAQQTAAIAFAIPPSSLTSALTAFGDRANLQVLYAADLAR GVQSPGVSGTLAPAQALSRLLAGTGLTYRFTSANTVTIARPAESGGAALPEGGIQLDTVTVEADGVAGPFVAVDTSTGMK MDVPLREVPQSVSVVTRQQMDDRGVQTLSDAIDYSAGVSASPYGQDNRFEQFVIRGFDENLLGVYRDGMRMPTAGFAGFR QEPYGLARVDILRGPTSTLYGLNNPGGLVNLVSKLPVVGAQFGEIWASYGSFDNLQTGFDINGAGVDGSNITYRFTGLVR GADTQVDYVSNDRIYVAPTLTWTPNANTTFTVFANLQQDRTGDTYQLLPAEGTLYPSVYGKIPPSRFLGVPDWSKYDATQ YSGGYFFEHRADNGWTLRQNLRYASVDVDYRTAYPIAAYGDTTTLLRTAQENNQTLGVFTIDNQAQYDSDLGFAKNQVVF GLDYSNTQQDGTQYGGTLQSLITGSSPVGPINPYFPVYDSTVAPLINTLNTSQSLSQTGLYAQDMFKLHDKWVFTFGGRY DWVQTESSTQSPVLAQLAPLLNYYYGVNVPSTFQTSANNGAFSGRVGLSYLFDNGMTPYASYSSSFNVVPGFTQSSVTVD TDYGPLPISYSMQPLKPETGEQYEVGLKYQPNNGKSYIQTSLYQLTKQNAVSFDTTDPMQQAYYQTGEVQVRGFEVEGAV DFENGFKLLAAYTYLHAEVTADIPPVGEPSIVGNTPERVPAHLASAWLDYTFQDGALKGFGLGGGVRYVGSTWGDRENTI YVPSYTLVDAAVRYAKDSWLFSLTAKNLFDNAYVGTCSSIANTYIGCSYGQTRTITAQVTYKW
Specific function: Involved in the initial step of iron uptake by binding chrysobactin, an iron chelatin siderophore that allows the bacteria to extract iron from the environment [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1786344, Length=768, Percent_Identity=33.3333333333333, Blast_Score=337, Evalue=2e-93, Organism=Escherichia coli, GI1787024, Length=746, Percent_Identity=24.1286863270777, Blast_Score=113, Evalue=4e-26, Organism=Escherichia coli, GI1787344, Length=744, Percent_Identity=22.7150537634409, Blast_Score=79, Evalue=1e-15, Organism=Escherichia coli, GI1788478, Length=163, Percent_Identity=30.0613496932515, Blast_Score=70, Evalue=8e-13, Organism=Escherichia coli, GI1787723, Length=187, Percent_Identity=27.2727272727273, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 93380; Mature: 93380
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDYHCRRPSRVSGKAIRLGLGLALLASTALSSAFTGSAAMAQQTAAIAFAIPPSSLTSA CCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHCCEEEEEEECCHHHHHH LTAFGDRANLQVLYAADLARGVQSPGVSGTLAPAQALSRLLAGTGLTYRFTSANTVTIAR HHHCCCCCCEEEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCEEEEEC PAESGGAALPEGGIQLDTVTVEADGVAGPFVAVDTSTGMKMDVPLREVPQSVSVVTRQQM CCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEEECCCCCEECCCHHHCCHHHHHHHHHHH DDRGVQTLSDAIDYSAGVSASPYGQDNRFEQFVIRGFDENLLGVYRDGMRMPTAGFAGFR HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCC QEPYGLARVDILRGPTSTLYGLNNPGGLVNLVSKLPVVGAQFGEIWASYGSFDNLQTGFD CCCCCEEEEEEECCCCHHEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCC INGAGVDGSNITYRFTGLVRGADTQVDYVSNDRIYVAPTLTWTPNANTTFTVFANLQQDR CCCCCCCCCCEEEEEEEEEECCCCEEEEECCCEEEEEEEEEECCCCCEEEEEEEECCCCC TGDTYQLLPAEGTLYPSVYGKIPPSRFLGVPDWSKYDATQYSGGYFFEHRADNGWTLRQN CCCEEEEECCCCCCCCHHHCCCCHHHEECCCCCCCCCCCCCCCCEEEEEECCCCEEEECC LRYASVDVDYRTAYPIAAYGDTTTLLRTAQENNQTLGVFTIDNQAQYDSDLGFAKNQVVF CEEEEEEECCCCCCCEEECCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEE GLDYSNTQQDGTQYGGTLQSLITGSSPVGPINPYFPVYDSTVAPLINTLNTSQSLSQTGL EECCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCC YAQDMFKLHDKWVFTFGGRYDWVQTESSTQSPVLAQLAPLLNYYYGVNVPSTFQTSANNG HHHHHHHHCCCEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCC AFSGRVGLSYLFDNGMTPYASYSSSFNVVPGFTQSSVTVDTDYGPLPISYSMQPLKPETG CEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC EQYEVGLKYQPNNGKSYIQTSLYQLTKQNAVSFDTTDPMQQAYYQTGEVQVRGFEVEGAV CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEEEECCEE DFENGFKLLAAYTYLHAEVTADIPPVGEPSIVGNTPERVPAHLASAWLDYTFQDGALKGF ECCCCCEEEHHHEEHEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCEEECCCCEEEE GLGGGVRYVGSTWGDRENTIYVPSYTLVDAAVRYAKDSWLFSLTAKNLFDNAYVGTCSSI CCCCCEEEECCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEHHHHCCCCCCCCHHHH ANTYIGCSYGQTRTITAQVTYKW HHHHEECCCCCCEEEEEEEEEEC >Mature Secondary Structure MLDYHCRRPSRVSGKAIRLGLGLALLASTALSSAFTGSAAMAQQTAAIAFAIPPSSLTSA CCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHCCEEEEEEECCHHHHHH LTAFGDRANLQVLYAADLARGVQSPGVSGTLAPAQALSRLLAGTGLTYRFTSANTVTIAR HHHCCCCCCEEEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCEEEEEC PAESGGAALPEGGIQLDTVTVEADGVAGPFVAVDTSTGMKMDVPLREVPQSVSVVTRQQM CCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEEECCCCCEECCCHHHCCHHHHHHHHHHH DDRGVQTLSDAIDYSAGVSASPYGQDNRFEQFVIRGFDENLLGVYRDGMRMPTAGFAGFR HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHCCCCCCCCCCCCCC QEPYGLARVDILRGPTSTLYGLNNPGGLVNLVSKLPVVGAQFGEIWASYGSFDNLQTGFD CCCCCEEEEEEECCCCHHEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCC INGAGVDGSNITYRFTGLVRGADTQVDYVSNDRIYVAPTLTWTPNANTTFTVFANLQQDR CCCCCCCCCCEEEEEEEEEECCCCEEEEECCCEEEEEEEEEECCCCCEEEEEEEECCCCC TGDTYQLLPAEGTLYPSVYGKIPPSRFLGVPDWSKYDATQYSGGYFFEHRADNGWTLRQN CCCEEEEECCCCCCCCHHHCCCCHHHEECCCCCCCCCCCCCCCCEEEEEECCCCEEEECC LRYASVDVDYRTAYPIAAYGDTTTLLRTAQENNQTLGVFTIDNQAQYDSDLGFAKNQVVF CEEEEEEECCCCCCCEEECCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCEEE GLDYSNTQQDGTQYGGTLQSLITGSSPVGPINPYFPVYDSTVAPLINTLNTSQSLSQTGL EECCCCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCC YAQDMFKLHDKWVFTFGGRYDWVQTESSTQSPVLAQLAPLLNYYYGVNVPSTFQTSANNG HHHHHHHHCCCEEEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEECCCCCC AFSGRVGLSYLFDNGMTPYASYSSSFNVVPGFTQSSVTVDTDYGPLPISYSMQPLKPETG CEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC EQYEVGLKYQPNNGKSYIQTSLYQLTKQNAVSFDTTDPMQQAYYQTGEVQVRGFEVEGAV CCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEEEEECCEE DFENGFKLLAAYTYLHAEVTADIPPVGEPSIVGNTPERVPAHLASAWLDYTFQDGALKGF ECCCCCEEEHHHEEHEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCEEECCCCEEEE GLGGGVRYVGSTWGDRENTIYVPSYTLVDAAVRYAKDSWLFSLTAKNLFDNAYVGTCSSI CCCCCEEEECCCCCCCCCEEEECCHHHHHHHHHHHCCCEEEEEEHHHHCCCCCCCCHHHH ANTYIGCSYGQTRTITAQVTYKW HHHHEECCCCCCEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8576065 [H]