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The map label for this gene is lpsA [H]

Identifier: 154245878

GI number: 154245878

Start: 2189610

End: 2190566

Strand: Reverse

Name: lpsA [H]

Synonym: Xaut_1934

Alternate gene names: 154245878

Gene position: 2190566-2189610 (Counterclockwise)

Preceding gene: 154245879

Following gene: 154245877

Centisome position: 41.26

GC content: 63.85

Gene sequence:

>957_bases
ATGGCAGTGAAGCTCCGCCAAAAGATTGCACGACCTCAGATCGCATCCTTATACAGGCCCATGCTGATTTTCGTCATCAA
CCTGGCGCGCCGGCCTGACCGTCTCGCCTTCATGCGCGGCCAGCTGGATGCCCTCGGCTTGGCGTTTGAGCGGATCGAAG
CTGTCGATGGGCAACGCGAGGACGTGGGGCAGGGCACTGACCTGATCACCCCCGTCGAGATCGCGTGCGCCATGAGCCAT
CGCAAGGCGTGGCAGCGGTTTCTGGAGACTGGTGAGAACCGCTGCCTGATCCTCGAGGACGATGTCCTCATCGCGCCGCG
CGCAAAGCTCCTGCTTGAGGATCCGCGCCACCTGCCCGCGGATGCTGACATCGTGCGGCTGGAAACAGGGCTTCAGAAAT
CGCTCGTTGGGCGGGCGCGGCGCTGCGGGCTGGCGGGCCACCGGGTCCATGCGCTCTATTCACGCCATCATGGCTCCGCG
GCGTGCATCATCACCCGCGGCTTCGCTGAACGTGCCGTTCGCAGCCTGACGACCTTCGTCGAGCCGATCGACGACATCAT
GTTCGCGGTGAACAGCCCCAATTACTTTCCGAGCATCAGGTACCAGATGCGGCCAGGCCTGTGCATTCAGGCGGACCTTT
ACCATCCATCGCAGCAAACCAAGCTCGCCCAGTCGGATCTGCAGCCTGACCGGCTTGTCCGCGTTCTGGGTCGAGACCCC
GTTCCCCCGGCTCCCAAGATGAAGGTCGTTCGGTCATTTCCGGAAAAATGCCTGCGCGAGGTCGGCCGCTGGCGGAGACG
GTCTCTCGGTTCGGCAAGGACGCTCTACGATCGCCTCATCGTGGGGCGGTCCTGGCGGCCCATTCCCTTCTCGGGGCCCA
TCCTTCCAGTCGCGGCCGCGGCGATTTCGGTCGACGACGCACAGGACACCAGAACTCTGGCACCCGCCAAACCCTGA

Upstream 100 bases:

>100_bases
CTGCCATGAGCTGCGGCCCCCGATCCTGCCGCGCCAAACCTTGGCAGGGCCTTCACCCGCGCAGTCTGCATCTGCGCGCG
GCGCCGGCGGCATTCACGGT

Downstream 100 bases:

>100_bases
TCGCTGACCTGATAGCTCAGCCCGGCGCCAGGCGCCGGGCTGCAGTCGCTCAAGCCCCGTCCCGCTCAGGGACAGGGATG
CTGGTAGCCGTCATAGCCGG

Product: glycosyl transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MAVKLRQKIARPQIASLYRPMLIFVINLARRPDRLAFMRGQLDALGLAFERIEAVDGQREDVGQGTDLITPVEIACAMSH
RKAWQRFLETGENRCLILEDDVLIAPRAKLLLEDPRHLPADADIVRLETGLQKSLVGRARRCGLAGHRVHALYSRHHGSA
ACIITRGFAERAVRSLTTFVEPIDDIMFAVNSPNYFPSIRYQMRPGLCIQADLYHPSQQTKLAQSDLQPDRLVRVLGRDP
VPPAPKMKVVRSFPEKCLREVGRWRRRSLGSARTLYDRLIVGRSWRPIPFSGPILPVAAAAISVDDAQDTRTLAPAKP

Sequences:

>Translated_318_residues
MAVKLRQKIARPQIASLYRPMLIFVINLARRPDRLAFMRGQLDALGLAFERIEAVDGQREDVGQGTDLITPVEIACAMSH
RKAWQRFLETGENRCLILEDDVLIAPRAKLLLEDPRHLPADADIVRLETGLQKSLVGRARRCGLAGHRVHALYSRHHGSA
ACIITRGFAERAVRSLTTFVEPIDDIMFAVNSPNYFPSIRYQMRPGLCIQADLYHPSQQTKLAQSDLQPDRLVRVLGRDP
VPPAPKMKVVRSFPEKCLREVGRWRRRSLGSARTLYDRLIVGRSWRPIPFSGPILPVAAAAISVDDAQDTRTLAPAKP
>Mature_317_residues
AVKLRQKIARPQIASLYRPMLIFVINLARRPDRLAFMRGQLDALGLAFERIEAVDGQREDVGQGTDLITPVEIACAMSHR
KAWQRFLETGENRCLILEDDVLIAPRAKLLLEDPRHLPADADIVRLETGLQKSLVGRARRCGLAGHRVHALYSRHHGSAA
CIITRGFAERAVRSLTTFVEPIDDIMFAVNSPNYFPSIRYQMRPGLCIQADLYHPSQQTKLAQSDLQPDRLVRVLGRDPV
PPAPKMKVVRSFPEKCLREVGRWRRRSLGSARTLYDRLIVGRSWRPIPFSGPILPVAAAAISVDDAQDTRTLAPAKP

Specific function: Involved in the biosynthesis of a moiety on the core of the lipopolysaccharide molecule [H]

COG id: COG3306

COG function: function code M; Glycosyltransferase involved in LPS biosynthesis

Gene ontology:

Cell location: Cytoplasm. Note=Assembles at the inner surface of the cytoplasmic membrane (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 25 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002654 [H]

Pfam domain/function: PF01755 Glyco_transf_25 [H]

EC number: NA

Molecular weight: Translated: 35714; Mature: 35583

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVKLRQKIARPQIASLYRPMLIFVINLARRPDRLAFMRGQLDALGLAFERIEAVDGQRE
CCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHCCCCHH
DVGQGTDLITPVEIACAMSHRKAWQRFLETGENRCLILEDDVLIAPRAKLLLEDPRHLPA
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEECCCHHHHHCCCCCCCC
DADIVRLETGLQKSLVGRARRCGLAGHRVHALYSRHHGSAACIITRGFAERAVRSLTTFV
CCCEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHH
EPIDDIMFAVNSPNYFPSIRYQMRPGLCIQADLYHPSQQTKLAQSDLQPDRLVRVLGRDP
HHHHHHHEECCCCCCCCCEEEECCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCC
VPPAPKMKVVRSFPEKCLREVGRWRRRSLGSARTLYDRLIVGRSWRPIPFSGPILPVAAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
AISVDDAQDTRTLAPAKP
HHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AVKLRQKIARPQIASLYRPMLIFVINLARRPDRLAFMRGQLDALGLAFERIEAVDGQRE
CCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHCCCCHH
DVGQGTDLITPVEIACAMSHRKAWQRFLETGENRCLILEDDVLIAPRAKLLLEDPRHLPA
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEECCCHHHHHCCCCCCCC
DADIVRLETGLQKSLVGRARRCGLAGHRVHALYSRHHGSAACIITRGFAERAVRSLTTFV
CCCEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHH
EPIDDIMFAVNSPNYFPSIRYQMRPGLCIQADLYHPSQQTKLAQSDLQPDRLVRVLGRDP
HHHHHHHEECCCCCCCCCEEEECCCCEEEEECCCCCHHHHHHHHHCCCHHHHHHHHCCCC
VPPAPKMKVVRSFPEKCLREVGRWRRRSLGSARTLYDRLIVGRSWRPIPFSGPILPVAAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
AISVDDAQDTRTLAPAKP
HHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7781993; 1885539 [H]