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The map label for this gene is ybeY [C]

Identifier: 154245756

GI number: 154245756

Start: 2040485

End: 2041015

Strand: Direct

Name: ybeY [C]

Synonym: Xaut_1812

Alternate gene names: 154245756

Gene position: 2040485-2041015 (Clockwise)

Preceding gene: 154245755

Following gene: 154245757

Centisome position: 38.43

GC content: 69.87

Gene sequence:

>531_bases
ATGGCCGCCCTGAAGCTAGTCGCCACGAGCGCCCCTCCCGAGGAGGACCCCGTCGCCATCGACGTGCTGGTGGAGGCGGA
CGGCTGGTCCGCCCTGCCCGACGCCGAGGTGATCTGCGTGCGGGCTGCGCAAGCGGCGCTCGCGGCCTGCGGCGACGAGG
TGCCGGAGCCCTGCGAGGTCGCCATCACCCTCACCGACGACGCCCGCATCCGCGTGCTGAACCGGGAGTGGCGCGGCAAG
GACAAGGCCACCAACGTGCTGTCCTTCCCCCAGCCGGACCTCCCCGACGACGTGGACGCGCCCCAGCCGCTGGGCGACAT
CATCGTCGCGCTGGAAACCCTCACCGGCGAAGCCCGGGCAGAAGACAAGACGGCGGGGCACCACCTCGCCCATCTGGTTG
TGCACGGCACCCTGCATCTTCTGGGCTACGACCACATAGACGACACCGAAGCAGAGGAAATGGAGGCGCTGGAACGGCGG
ATCCTTGCGGGGCTCGGGATCGACGATCCCTATGCCCTGCCCCAGGACTGA

Upstream 100 bases:

>100_bases
CACGAGATGGTCGGGCGCATCGTCGCGGCCTACGAGAAGCTCGACGCGGCCAAGCTCGAGGCCGCGTCCGCCCGCCTCGG
CAAGGCCGGAGCCTGATCTG

Downstream 100 bases:

>100_bases
CGTTCCAAGGCGAAGATCAGGCCATGTCCAACATCGACCAGCCAACGACCGAGACCAGCGCGGAACCGCAAAGTTTTCTC
GATCGATTGCGTGCCCTCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MAALKLVATSAPPEEDPVAIDVLVEADGWSALPDAEVICVRAAQAALAACGDEVPEPCEVAITLTDDARIRVLNREWRGK
DKATNVLSFPQPDLPDDVDAPQPLGDIIVALETLTGEARAEDKTAGHHLAHLVVHGTLHLLGYDHIDDTEAEEMEALERR
ILAGLGIDDPYALPQD

Sequences:

>Translated_176_residues
MAALKLVATSAPPEEDPVAIDVLVEADGWSALPDAEVICVRAAQAALAACGDEVPEPCEVAITLTDDARIRVLNREWRGK
DKATNVLSFPQPDLPDDVDAPQPLGDIIVALETLTGEARAEDKTAGHHLAHLVVHGTLHLLGYDHIDDTEAEEMEALERR
ILAGLGIDDPYALPQD
>Mature_175_residues
AALKLVATSAPPEEDPVAIDVLVEADGWSALPDAEVICVRAAQAALAACGDEVPEPCEVAITLTDDARIRVLNREWRGKD
KATNVLSFPQPDLPDDVDAPQPLGDIIVALETLTGEARAEDKTAGHHLAHLVVHGTLHLLGYDHIDDTEAEEMEALERRI
LAGLGIDDPYALPQD

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=154, Percent_Identity=43.5064935064935, Blast_Score=97, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 18835; Mature: 18704

Theoretical pI: Translated: 4.00; Mature: 4.00

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAALKLVATSAPPEEDPVAIDVLVEADGWSALPDAEVICVRAAQAALAACGDEVPEPCEV
CCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCEEE
AITLTDDARIRVLNREWRGKDKATNVLSFPQPDLPDDVDAPQPLGDIIVALETLTGEARA
EEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
EDKTAGHHLAHLVVHGTLHLLGYDHIDDTEAEEMEALERRILAGLGIDDPYALPQD
CCCHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AALKLVATSAPPEEDPVAIDVLVEADGWSALPDAEVICVRAAQAALAACGDEVPEPCEV
CCEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCCEEE
AITLTDDARIRVLNREWRGKDKATNVLSFPQPDLPDDVDAPQPLGDIIVALETLTGEARA
EEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
EDKTAGHHLAHLVVHGTLHLLGYDHIDDTEAEEMEALERRILAGLGIDDPYALPQD
CCCHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA