Click here to switch to the map view.

The map label for this gene is yncD [C]

Identifier: 154245730

GI number: 154245730

Start: 2013480

End: 2015954

Strand: Direct

Name: yncD [C]

Synonym: Xaut_1786

Alternate gene names: 154245730

Gene position: 2013480-2015954 (Clockwise)

Preceding gene: 154245720

Following gene: 154245731

Centisome position: 37.93

GC content: 64.73

Gene sequence:

>2475_bases
ATGAGGGCGGAAACTTCCTGGCGGGCCATTGCCGTCGCACTCGGCCTTTCGGGCGCCACCCTGCCGGCAATGCCGTTCGT
AGCAGGCCCGGCGCTGGCCCAGTCGGCGCAAAGCCAAGCGGCCCCGGAGGCCGGCGGCGCGATCGAGCTGCCCACGGTTG
AGGTGGTCGCCACCACGCCGCTCTCCGGCACCGGCATCGACGTGGACCGGGTGCCCGGCGCGGTCACCACCATCTCGGCG
GAGGAGTTCAACCGGCTGCAGTCCTTCTCCACCATCGACGCTTTGGTCCAGTACACGCCCAGCGCCACCTCCACCGACGT
GCAGGGCAACGCCTTCTTCCAGGACTTCCGCTTCCGCGGCTTTGCCGCCTCGCCGCTGCAGGGCACGCCGCAGGGCATCG
CGGTCTACCAGAACGGCATCCGCGTCAACGAGGCGTTCGGCGACACGGTGAACTGGGACCTCATTCCCGAGGTCGCCATC
GACCGCGCCGAGGTGTTCTCCAACAATCCGGCGTTCGGCCTCAACGCGCTCGGCGGCGCCGTCTCCATCCAGATGAAGAA
CGGTTTCACCTATCACGGCTTCGAGGGCTCGGTGCAGGGTGGCTCGTTCGGCCAGATCGGCGGTTCGATCCAGTATGGCG
GCGAGAAGGACGGCGTCGGCCTCTACATCGCCGCCGACGCGGTGCGCGACGACGGCTGGCGCAGCCATTCCCCCTCCGAG
CTGGCGCGCTTCTACGGCGACCTCGGCTGGAAAGGCGACAAGGGCGAGCTGCACCTCGTGGCGAGCGCCGCCAGCAATTC
GCTCGGCGTGGTGGGTCCCACCCCGGTGGAGATGCTCGCGGCCGACTACAACTCGGTCTACACGTGGCCGCAGACCACCC
AGAACGACATGGGCATGCTGGCCCTCAACGGCCGCTACGACCTCTCCGACACCTGGCAGTTGCAGAGCAATCTTTACGTC
CGCCGCTTCAAGCAGTCCCACGTGGACGGCAATGACGCCGATCTCGAGAATTGCAGCAACAAGTGGAACCCCGGCGTCGG
CAACACCAAGATGTGCCTGGAGGAGGACCAGTTCACCGGTCCCACGGGCGGCGGCAACCCCCTCTCCAATCCGCAATACG
CCGCCTTCCGCAGCCAGATGGTGCTCTACGACCAGAACGGCAACACCATCCCGTTCAACGAGCTGGCCTCCAACCAGCTC
TATGGTGTCATCAACCGCACCTGGACCGACACCACCACCTATGGCGGCTCGGTGCAGGCGGTGAGCACCGACAAGCTGAT
CGGCCACGACAATTATTTCGTGGTGGGCGGCAGCGTCGACTACAGCACGGTCAACTTCAAATCGACCACCGAGCTGGGCA
TCACCGACATCAACACCCTGGGCGTGGCCGGCACCGGCATCTACCTGCAGAACAGGCCGAATTATTCGCTGCCGGAAGAA
TACCAGGTGTTCTACCTGCCGGTGAACCTGGACGCCACCACCACCTATTACGGCCTCTACGCCACCAACGCCTTCGACAT
GACCGACCGCGCCACCCTGACCATGGGCGCGCGGCTCAACATCGCGAAGATCAGCATGCAGGACGCCAGCGGCATCAGCC
CCCAGCTGAATGGCGACTACACCTTCGCACGCATCAACCCCATCATCGGCCTCACCTACAAGATCACCTCCGATGTCACC
GCCTATGGCGGCTATTCGGAATCCAACCGCGCGCCGACCCCGCTGGAGCTGAACTGCGCCGACCCCAACCGGCCGTGCCT
CTTGGAAAATTCCCTGGTAGCCGATCCGCCGCTGGAGCAGGTGGTGTCGCACACCTACGAGGCCGGCCTGCGCGGCGCCA
GCACGCTGTTCGGCGGCAACATGAGCTGGAAGCTCGGACTCTACCGGGTGGACAGCGACAACGACATCATCGCCCTCGCC
AGCGAGCAGACCGGCTACGGCTATTACACCAACGTACCCGCCACCCGCCGGCAGGGCTTCGAGGCCGGGCTGCAGTACGT
CAACGGGCCGTGGAAGCTCTACGCCAACTACGCCTATATCGACGCCACCTTCCAGTTCTCGGGCACGCTGGCCTCGCCCA
ACAATCCGCTGGCCACCGACGGCGAGATCTTCGTGACCCCGGGCGACCATATCCCCGCCATCCCGGCCCAGACCCTGAAG
TTCGGCCTCGACTACATGGTGACCGACAAGTGGAAGGTCGGCGGCGACGTCATCGCCGTGTCGAGCCAGTATTATGCGGG
CGACGAATCCAACATCAACCCGATGCTGCCGGGCTATTGGGTGGCCAATGTGCGCACCAGCTACCAGATCACGCCCAACA
TCCAGGTGTTCGGCCTGATCAACAATCTCTTCAACCAGAAATATGCCTCCTACGGCACCTTCTTCGACACCGGTTATCTC
GGCCTCAGCAACGCCCAGATGCAGACCCCCGGCCAGCCTTTGTCCGCCTACGCCGGGATGAAGGCGACCTTTTGA

Upstream 100 bases:

>100_bases
AAATCATTATCCTGCCACAATCAAGAGACGGCGGTGATACTGCTGCACACTCACCGGAGCGCAGGTTCTGCGTCTGGATA
GAAAAGCAGGGGACGGGGCG

Downstream 100 bases:

>100_bases
GGGTGAAGTTGAAGAGGCGGGGGGATGAGCGTCTGCGGCCCTCGCAGGCGCTTTACCATGATCATTCCCGGACGCCCCGT
CCCGCCCGTGCACCGCAGCA

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Siderophore Receptor; NB-Dependent Receptor YncD; Nb-Dependent Receptor; OM Receptor nB; NB Domain-Containing Protein; NB-Dependent Receptor Domain Protein; NB-Dependent Receptor-Like Protein; NB-Dependent Receptor Plug; NB-Dependent Receptor Protein; Ferrienterobactin-Like Protein; Outer Membrane Receptor Protein Mostly Fe Transport

Number of amino acids: Translated: 824; Mature: 824

Protein sequence:

>824_residues
MRAETSWRAIAVALGLSGATLPAMPFVAGPALAQSAQSQAAPEAGGAIELPTVEVVATTPLSGTGIDVDRVPGAVTTISA
EEFNRLQSFSTIDALVQYTPSATSTDVQGNAFFQDFRFRGFAASPLQGTPQGIAVYQNGIRVNEAFGDTVNWDLIPEVAI
DRAEVFSNNPAFGLNALGGAVSIQMKNGFTYHGFEGSVQGGSFGQIGGSIQYGGEKDGVGLYIAADAVRDDGWRSHSPSE
LARFYGDLGWKGDKGELHLVASAASNSLGVVGPTPVEMLAADYNSVYTWPQTTQNDMGMLALNGRYDLSDTWQLQSNLYV
RRFKQSHVDGNDADLENCSNKWNPGVGNTKMCLEEDQFTGPTGGGNPLSNPQYAAFRSQMVLYDQNGNTIPFNELASNQL
YGVINRTWTDTTTYGGSVQAVSTDKLIGHDNYFVVGGSVDYSTVNFKSTTELGITDINTLGVAGTGIYLQNRPNYSLPEE
YQVFYLPVNLDATTTYYGLYATNAFDMTDRATLTMGARLNIAKISMQDASGISPQLNGDYTFARINPIIGLTYKITSDVT
AYGGYSESNRAPTPLELNCADPNRPCLLENSLVADPPLEQVVSHTYEAGLRGASTLFGGNMSWKLGLYRVDSDNDIIALA
SEQTGYGYYTNVPATRRQGFEAGLQYVNGPWKLYANYAYIDATFQFSGTLASPNNPLATDGEIFVTPGDHIPAIPAQTLK
FGLDYMVTDKWKVGGDVIAVSSQYYAGDESNINPMLPGYWVANVRTSYQITPNIQVFGLINNLFNQKYASYGTFFDTGYL
GLSNAQMQTPGQPLSAYAGMKATF

Sequences:

>Translated_824_residues
MRAETSWRAIAVALGLSGATLPAMPFVAGPALAQSAQSQAAPEAGGAIELPTVEVVATTPLSGTGIDVDRVPGAVTTISA
EEFNRLQSFSTIDALVQYTPSATSTDVQGNAFFQDFRFRGFAASPLQGTPQGIAVYQNGIRVNEAFGDTVNWDLIPEVAI
DRAEVFSNNPAFGLNALGGAVSIQMKNGFTYHGFEGSVQGGSFGQIGGSIQYGGEKDGVGLYIAADAVRDDGWRSHSPSE
LARFYGDLGWKGDKGELHLVASAASNSLGVVGPTPVEMLAADYNSVYTWPQTTQNDMGMLALNGRYDLSDTWQLQSNLYV
RRFKQSHVDGNDADLENCSNKWNPGVGNTKMCLEEDQFTGPTGGGNPLSNPQYAAFRSQMVLYDQNGNTIPFNELASNQL
YGVINRTWTDTTTYGGSVQAVSTDKLIGHDNYFVVGGSVDYSTVNFKSTTELGITDINTLGVAGTGIYLQNRPNYSLPEE
YQVFYLPVNLDATTTYYGLYATNAFDMTDRATLTMGARLNIAKISMQDASGISPQLNGDYTFARINPIIGLTYKITSDVT
AYGGYSESNRAPTPLELNCADPNRPCLLENSLVADPPLEQVVSHTYEAGLRGASTLFGGNMSWKLGLYRVDSDNDIIALA
SEQTGYGYYTNVPATRRQGFEAGLQYVNGPWKLYANYAYIDATFQFSGTLASPNNPLATDGEIFVTPGDHIPAIPAQTLK
FGLDYMVTDKWKVGGDVIAVSSQYYAGDESNINPMLPGYWVANVRTSYQITPNIQVFGLINNLFNQKYASYGTFFDTGYL
GLSNAQMQTPGQPLSAYAGMKATF
>Mature_824_residues
MRAETSWRAIAVALGLSGATLPAMPFVAGPALAQSAQSQAAPEAGGAIELPTVEVVATTPLSGTGIDVDRVPGAVTTISA
EEFNRLQSFSTIDALVQYTPSATSTDVQGNAFFQDFRFRGFAASPLQGTPQGIAVYQNGIRVNEAFGDTVNWDLIPEVAI
DRAEVFSNNPAFGLNALGGAVSIQMKNGFTYHGFEGSVQGGSFGQIGGSIQYGGEKDGVGLYIAADAVRDDGWRSHSPSE
LARFYGDLGWKGDKGELHLVASAASNSLGVVGPTPVEMLAADYNSVYTWPQTTQNDMGMLALNGRYDLSDTWQLQSNLYV
RRFKQSHVDGNDADLENCSNKWNPGVGNTKMCLEEDQFTGPTGGGNPLSNPQYAAFRSQMVLYDQNGNTIPFNELASNQL
YGVINRTWTDTTTYGGSVQAVSTDKLIGHDNYFVVGGSVDYSTVNFKSTTELGITDINTLGVAGTGIYLQNRPNYSLPEE
YQVFYLPVNLDATTTYYGLYATNAFDMTDRATLTMGARLNIAKISMQDASGISPQLNGDYTFARINPIIGLTYKITSDVT
AYGGYSESNRAPTPLELNCADPNRPCLLENSLVADPPLEQVVSHTYEAGLRGASTLFGGNMSWKLGLYRVDSDNDIIALA
SEQTGYGYYTNVPATRRQGFEAGLQYVNGPWKLYANYAYIDATFQFSGTLASPNNPLATDGEIFVTPGDHIPAIPAQTLK
FGLDYMVTDKWKVGGDVIAVSSQYYAGDESNINPMLPGYWVANVRTSYQITPNIQVFGLINNLFNQKYASYGTFFDTGYL
GLSNAQMQTPGQPLSAYAGMKATF

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 88795; Mature: 88795

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAETSWRAIAVALGLSGATLPAMPFVAGPALAQSAQSQAAPEAGGAIELPTVEVVATTP
CCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCEEEEEEECC
LSGTGIDVDRVPGAVTTISAEEFNRLQSFSTIDALVQYTPSATSTDVQGNAFFQDFRFRG
CCCCCCCHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHCCCC
FAASPLQGTPQGIAVYQNGIRVNEAFGDTVNWDLIPEVAIDRAEVFSNNPAFGLNALGGA
EECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHCCHHHHHCCCCCCCEECCCCE
VSIQMKNGFTYHGFEGSVQGGSFGQIGGSIQYGGEKDGVGLYIAADAVRDDGWRSHSPSE
EEEEECCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCHHH
LARFYGDLGWKGDKGELHLVASAASNSLGVVGPTPVEMLAADYNSVYTWPQTTQNDMGML
HHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCCCEEE
ALNGRYDLSDTWQLQSNLYVRRFKQSHVDGNDADLENCSNKWNPGVGNTKMCLEEDQFTG
EECCCCCCCCCEEECCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCEEEEECCCCCC
PTGGGNPLSNPQYAAFRSQMVLYDQNGNTIPFNELASNQLYGVINRTWTDTTTYGGSVQA
CCCCCCCCCCCCHHEEECEEEEECCCCCCCCHHHHCCCCEEEEEECCCCCCCCCCCEEEE
VSTDKLIGHDNYFVVGGSVDYSTVNFKSTTELGITDINTLGVAGTGIYLQNRPNYSLPEE
EECCEEECCCCEEEEECCCEEEEEECCCCCCCCCEECCCCCEEEEEEEEECCCCCCCCCC
YQVFYLPVNLDATTTYYGLYATNAFDMTDRATLTMGARLNIAKISMQDASGISPQLNGDY
CEEEEEEEECCCCEEEEEEEEECEECCCCCEEEEECCEEEEEEEEECCCCCCCCCCCCCE
TFARINPIIGLTYKITSDVTAYGGYSESNRAPTPLELNCADPNRPCLLENSLVADPPLEQ
EEEEECCEEEEEEEEECCEEECCCCCCCCCCCCCEEEECCCCCCCEEECCCCCCCCCHHH
VVSHTYEAGLRGASTLFGGNMSWKLGLYRVDSDNDIIALASEQTGYGYYTNVPATRRQGF
HHHHHHHHCCCCCCEEECCCCEEEEEEEEECCCCCEEEEECCCCCCCEEECCCHHHHCCH
EAGLQYVNGPWKLYANYAYIDATFQFSGTLASPNNPLATDGEIFVTPGDHIPAIPAQTLK
HHHHHHCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCHHHHH
FGLDYMVTDKWKVGGDVIAVSSQYYAGDESNINPMLPGYWVANVRTSYQITPNIQVFGLI
HCCCEEEECCEECCCCEEEEECEEECCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEH
NNLFNQKYASYGTFFDTGYLGLSNAQMQTPGQPLSAYAGMKATF
HHHHHHHHHHCCCEEECCCEECCCCCCCCCCCCHHHHCCCEECC
>Mature Secondary Structure
MRAETSWRAIAVALGLSGATLPAMPFVAGPALAQSAQSQAAPEAGGAIELPTVEVVATTP
CCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEECCEEEEEEECC
LSGTGIDVDRVPGAVTTISAEEFNRLQSFSTIDALVQYTPSATSTDVQGNAFFQDFRFRG
CCCCCCCHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHCCCC
FAASPLQGTPQGIAVYQNGIRVNEAFGDTVNWDLIPEVAIDRAEVFSNNPAFGLNALGGA
EECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCHHHHCCHHHHHCCCCCCCEECCCCE
VSIQMKNGFTYHGFEGSVQGGSFGQIGGSIQYGGEKDGVGLYIAADAVRDDGWRSHSPSE
EEEEECCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCCCCCCCHHH
LARFYGDLGWKGDKGELHLVASAASNSLGVVGPTPVEMLAADYNSVYTWPQTTQNDMGML
HHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCCCEEE
ALNGRYDLSDTWQLQSNLYVRRFKQSHVDGNDADLENCSNKWNPGVGNTKMCLEEDQFTG
EECCCCCCCCCEEECCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCEEEEECCCCCC
PTGGGNPLSNPQYAAFRSQMVLYDQNGNTIPFNELASNQLYGVINRTWTDTTTYGGSVQA
CCCCCCCCCCCCHHEEECEEEEECCCCCCCCHHHHCCCCEEEEEECCCCCCCCCCCEEEE
VSTDKLIGHDNYFVVGGSVDYSTVNFKSTTELGITDINTLGVAGTGIYLQNRPNYSLPEE
EECCEEECCCCEEEEECCCEEEEEECCCCCCCCCEECCCCCEEEEEEEEECCCCCCCCCC
YQVFYLPVNLDATTTYYGLYATNAFDMTDRATLTMGARLNIAKISMQDASGISPQLNGDY
CEEEEEEEECCCCEEEEEEEEECEECCCCCEEEEECCEEEEEEEEECCCCCCCCCCCCCE
TFARINPIIGLTYKITSDVTAYGGYSESNRAPTPLELNCADPNRPCLLENSLVADPPLEQ
EEEEECCEEEEEEEEECCEEECCCCCCCCCCCCCEEEECCCCCCCEEECCCCCCCCCHHH
VVSHTYEAGLRGASTLFGGNMSWKLGLYRVDSDNDIIALASEQTGYGYYTNVPATRRQGF
HHHHHHHHCCCCCCEEECCCCEEEEEEEEECCCCCEEEEECCCCCCCEEECCCHHHHCCH
EAGLQYVNGPWKLYANYAYIDATFQFSGTLASPNNPLATDGEIFVTPGDHIPAIPAQTLK
HHHHHHCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCCHHHHH
FGLDYMVTDKWKVGGDVIAVSSQYYAGDESNINPMLPGYWVANVRTSYQITPNIQVFGLI
HCCCEEEECCEECCCCEEEEECEEECCCCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEH
NNLFNQKYASYGTFFDTGYLGLSNAQMQTPGQPLSAYAGMKATF
HHHHHHHHHHCCCEEECCCEECCCCCCCCCCCCHHHHCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA