BacMap

Definition	Xanthobacter autotrophicus Py2 chromosome, complete genome.
Accession	NC_009720
Length	5,308,934

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The map label for this gene is ucpA [C]

Identifier: 154245560

GI number: 154245560

Start: 1828951

End: 1829715

Strand: Reverse

Name: ucpA [C]

Synonym: Xaut_1615

Alternate gene names: 154245560

Gene position: 1829715-1828951 (Counterclockwise)

Preceding gene: 154245561

Following gene: 154245559

Centisome position: 34.46

GC content: 72.16

Gene sequence:

>765_bases
GTGAGCGGCCCCGGCACTGGCGCCCTCGCCGGCCGCTGCGCCCTCATCACCGGCGGCGCCTCCGGACTTGGCCTTGCCGT
GGCGCAAGCGTTCCGGGTCGAGGGCGCCGCGCTGGTGCTGCTCGACCTCGACCCCGCCGCCGAGGCGCGGGCGCAGGAGC
TGGGCAATGCCATCGCAGTCAAGGGATCGGTCACGCGCAAGGCGGACATCGTCCGCGCCTACGACGCCGCCGAGGCCCGC
TTCGGCCCGGTGGACATCTGCGTCGCCAATGCCGGCGTCTCCCAGAATGCCCCCACCCTCTCGGTCACCGAGGAGGAGTG
GCAGCGCGTCATCGACATCAACCTCACCGGCACCTTCCTCACGGCGCAGGAGGCGGGGCGGCGCATGATCGCCCAGGGCG
GCGGTTCCCTGCTGCTCATGGCCTCCATGTATGGCGTGGTGGCCGCGCCCGAACGCATCGGCTACTGCGCCTCCAAGGCG
GCCGTCGCCATGATGGCCAAGGCCCTCTCCTGCGAATGGGCGCGGGACAAGGTGCGGGTGAATGCCATCGCCCCCGGCTA
TGTGCGCACCGCCCTGCTCGACGACCTCGCCGCCCGCGGCCGTCTCGACCTCGACCGCCTGAAGGCCCGCACCCCCATGG
GCCGGCTGGTGGAGGCGGACGAAGTGGCCCGCATGGCGGTGTTTCTCGCCTCCGATGCCTCAAGCGCCGTCACCGGGCAG
GTGATGGGCGTGGACGGCGGCTGGTCCGCCTACGGCTATGTGTGA

Upstream 100 bases:

>100_bases
CGAAGGGCTGCCGCATCCATTTCGGCAAGCCCATGCTGGCCTGCCAGCTCGACCTCATGGCCGAGTTCCTCGGCATGCGC
GCGCTCCCGGGAGCCGGCAA

Downstream 100 bases:

>100_bases
CGGCACGCCGTGTCCCGGCTTTCCACGGCAAGGACACGGCCTTTGCGGGAGAAAGGGGCTTGCGGTGCGCGGCCAACGGA
TGCATCCGCTTCGCCACCGC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MSGPGTGALAGRCALITGGASGLGLAVAQAFRVEGAALVLLDLDPAAEARAQELGNAIAVKGSVTRKADIVRAYDAAEAR
FGPVDICVANAGVSQNAPTLSVTEEEWQRVIDINLTGTFLTAQEAGRRMIAQGGGSLLLMASMYGVVAAPERIGYCASKA
AVAMMAKALSCEWARDKVRVNAIAPGYVRTALLDDLAARGRLDLDRLKARTPMGRLVEADEVARMAVFLASDASSAVTGQ
VMGVDGGWSAYGYV

Sequences:

>Translated_254_residues
MSGPGTGALAGRCALITGGASGLGLAVAQAFRVEGAALVLLDLDPAAEARAQELGNAIAVKGSVTRKADIVRAYDAAEAR
FGPVDICVANAGVSQNAPTLSVTEEEWQRVIDINLTGTFLTAQEAGRRMIAQGGGSLLLMASMYGVVAAPERIGYCASKA
AVAMMAKALSCEWARDKVRVNAIAPGYVRTALLDDLAARGRLDLDRLKARTPMGRLVEADEVARMAVFLASDASSAVTGQ
VMGVDGGWSAYGYV
>Mature_253_residues
SGPGTGALAGRCALITGGASGLGLAVAQAFRVEGAALVLLDLDPAAEARAQELGNAIAVKGSVTRKADIVRAYDAAEARF
GPVDICVANAGVSQNAPTLSVTEEEWQRVIDINLTGTFLTAQEAGRRMIAQGGGSLLLMASMYGVVAAPERIGYCASKAA
VAMMAKALSCEWARDKVRVNAIAPGYVRTALLDDLAARGRLDLDRLKARTPMGRLVEADEVARMAVFLASDASSAVTGQV
MGVDGGWSAYGYV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40254992, Length=239, Percent_Identity=33.8912133891213, Blast_Score=122, Evalue=3e-28,
Organism=Homo sapiens, GI15277342, Length=248, Percent_Identity=31.4516129032258, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI7705925, Length=259, Percent_Identity=31.2741312741313, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI19923817, Length=271, Percent_Identity=26.5682656826568, Blast_Score=104, Evalue=8e-23,
Organism=Homo sapiens, GI4758504, Length=254, Percent_Identity=34.251968503937, Blast_Score=102, Evalue=2e-22,
Organism=Homo sapiens, GI66933014, Length=250, Percent_Identity=30.8, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI32483357, Length=245, Percent_Identity=29.7959183673469, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI4503301, Length=208, Percent_Identity=29.8076923076923, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI83715985, Length=255, Percent_Identity=33.7254901960784, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI59889578, Length=232, Percent_Identity=30.6034482758621, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI10190704, Length=251, Percent_Identity=28.2868525896414, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI31542939, Length=237, Percent_Identity=27.4261603375527, Blast_Score=85, Evalue=6e-17,
Organism=Homo sapiens, GI4504505, Length=205, Percent_Identity=28.780487804878, Blast_Score=78, Evalue=8e-15,
Organism=Homo sapiens, GI210032110, Length=227, Percent_Identity=26.8722466960352, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI20149619, Length=227, Percent_Identity=30.8370044052863, Blast_Score=75, Evalue=4e-14,
Organism=Homo sapiens, GI109715829, Length=254, Percent_Identity=25.9842519685039, Blast_Score=75, Evalue=7e-14,
Organism=Homo sapiens, GI126723750, Length=248, Percent_Identity=27.8225806451613, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI5031737, Length=249, Percent_Identity=28.1124497991968, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI40807363, Length=230, Percent_Identity=25.6521739130435, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI142976729, Length=227, Percent_Identity=25.1101321585903, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI224922801, Length=183, Percent_Identity=26.775956284153, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI7706318, Length=203, Percent_Identity=26.1083743842365, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI126723191, Length=189, Percent_Identity=29.1005291005291, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=36.7588932806324, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1790717, Length=249, Percent_Identity=36.144578313253, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=34.8178137651822, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=32.2448979591837, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=32.8, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=33.0612244897959, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1788459, Length=172, Percent_Identity=33.1395348837209, Blast_Score=103, Evalue=9e-24,
Organism=Escherichia coli, GI1789378, Length=256, Percent_Identity=32.8125, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=31.0204081632653, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI2367365, Length=254, Percent_Identity=30.3149606299213, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1786812, Length=249, Percent_Identity=30.1204819277108, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1787545, Length=265, Percent_Identity=31.3207547169811, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789057, Length=253, Percent_Identity=25.6916996047431, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1786701, Length=200, Percent_Identity=26, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=246, Percent_Identity=33.3333333333333, Blast_Score=125, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17555706, Length=243, Percent_Identity=33.3333333333333, Blast_Score=125, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17560676, Length=260, Percent_Identity=30.3846153846154, Blast_Score=118, Evalue=3e-27,
Organism=Caenorhabditis elegans, GI17561272, Length=256, Percent_Identity=36.328125, Blast_Score=110, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17536651, Length=268, Percent_Identity=29.1044776119403, Blast_Score=104, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI17536025, Length=262, Percent_Identity=30.1526717557252, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=27.3809523809524, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI115534694, Length=255, Percent_Identity=27.0588235294118, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=30.5555555555556, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17544670, Length=274, Percent_Identity=28.1021897810219, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=251, Percent_Identity=29.0836653386454, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193203117, Length=198, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193203115, Length=196, Percent_Identity=27.5510204081633, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=262, Percent_Identity=26.7175572519084, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=210, Percent_Identity=31.9047619047619, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=258, Percent_Identity=26.3565891472868, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=266, Percent_Identity=27.0676691729323, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=269, Percent_Identity=24.907063197026, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=260, Percent_Identity=25.7692307692308, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17508895, Length=203, Percent_Identity=27.5862068965517, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17531453, Length=260, Percent_Identity=24.6153846153846, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=25, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=260, Percent_Identity=25, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=24.6212121212121, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=220, Percent_Identity=25.9090909090909, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=23.0769230769231, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI72000259, Length=266, Percent_Identity=25.187969924812, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17538486, Length=264, Percent_Identity=26.5151515151515, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17568967, Length=189, Percent_Identity=26.984126984127, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=268, Percent_Identity=25, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=263, Percent_Identity=29.6577946768061, Blast_Score=85, Evalue=9e-18,
Organism=Saccharomyces cerevisiae, GI6322861, Length=196, Percent_Identity=30.1020408163265, Blast_Score=82, Evalue=9e-17,
Organism=Saccharomyces cerevisiae, GI6323882, Length=247, Percent_Identity=28.3400809716599, Blast_Score=65, Evalue=7e-12,
Organism=Saccharomyces cerevisiae, GI6320089, Length=196, Percent_Identity=26.530612244898, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24639444, Length=248, Percent_Identity=31.0483870967742, Blast_Score=107, Evalue=9e-24,
Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=30.1587301587302, Blast_Score=103, Evalue=1e-22,
Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=31.7269076305221, Blast_Score=101, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24644339, Length=255, Percent_Identity=30.5882352941176, Blast_Score=101, Evalue=5e-22,
Organism=Drosophila melanogaster, GI28571526, Length=255, Percent_Identity=28.2352941176471, Blast_Score=92, Evalue=3e-19,
Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=28.5714285714286, Blast_Score=91, Evalue=8e-19,
Organism=Drosophila melanogaster, GI281364892, Length=233, Percent_Identity=27.4678111587983, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI17737361, Length=250, Percent_Identity=32, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI18859837, Length=189, Percent_Identity=31.2169312169312, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI21358495, Length=205, Percent_Identity=28.780487804878, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24644337, Length=252, Percent_Identity=30.952380952381, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24643142, Length=249, Percent_Identity=26.9076305220884, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24640492, Length=225, Percent_Identity=24, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24649181, Length=193, Percent_Identity=27.4611398963731, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21355631, Length=183, Percent_Identity=26.775956284153, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26220; Mature: 26089

Theoretical pI: Translated: 5.40; Mature: 5.40

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGPGTGALAGRCALITGGASGLGLAVAQAFRVEGAALVLLDLDPAAEARAQELGNAIAV
CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCEEEE
KGSVTRKADIVRAYDAAEARFGPVDICVANAGVSQNAPTLSVTEEEWQRVIDINLTGTFL
ECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEECHHHHCEEEEEEECEEEE
TAQEAGRRMIAQGGGSLLLMASMYGVVAAPERIGYCASKAAVAMMAKALSCEWARDKVRV
EHHHHCCEEHHCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
NAIAPGYVRTALLDDLAARGRLDLDRLKARTPMGRLVEADEVARMAVFLASDASSAVTGQ
EEECCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCHHHHHHHHEEEECCCCCCEEEE
VMGVDGGWSAYGYV
EEEECCCCCCCCCC
>Mature Secondary Structure 
SGPGTGALAGRCALITGGASGLGLAVAQAFRVEGAALVLLDLDPAAEARAQELGNAIAV
CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCEEEE
KGSVTRKADIVRAYDAAEARFGPVDICVANAGVSQNAPTLSVTEEEWQRVIDINLTGTFL
ECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEECHHHHCEEEEEEECEEEE
TAQEAGRRMIAQGGGSLLLMASMYGVVAAPERIGYCASKAAVAMMAKALSCEWARDKVRV
EHHHHCCEEHHCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
NAIAPGYVRTALLDDLAARGRLDLDRLKARTPMGRLVEADEVARMAVFLASDASSAVTGQ
EEECCHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCHHHHHHHHEEEECCCCCCEEEE
VMGVDGGWSAYGYV
EEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8796346; 9163424 [H]