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The map label for this gene is yckA [H]

Identifier: 154245546

GI number: 154245546

Start: 1811982

End: 1812626

Strand: Reverse

Name: yckA [H]

Synonym: Xaut_1600

Alternate gene names: 154245546

Gene position: 1812626-1811982 (Counterclockwise)

Preceding gene: 154245547

Following gene: 154245545

Centisome position: 34.14

GC content: 64.96

Gene sequence:

>645_bases
ATGCTGGGCCTGACCATCGAGCAGATCGCCTACCTCTTCCGCGGCGCCGGCTGGACCATCGTGCTGTCCGTGCTGGGCTT
TGTCGGCGGCACGTTGCTGGGCCTGCCGGTGGCGCTCGCCCGCGCGTCCAAGAGCCGGCTGCTGCGCTTCCTGTCCGGCC
TGCTGGTGCAACTGGTGCAGGGCATTCCGCTGCCGGTCATCATGTTCGTGGTCTACTTCGGCATCTCCATCGCCGGCTTC
GACGTGCCGGCGCTGGTGGCGGCGGGCGTCGCCATGACGCTTTATTCCGGCGCTTATCTCGGCGAGATCTGGAAGGGCTG
CATCCTCGCCGTGCCGCGCACCCAGTGGGAGGCGGGCGAGTGCCTGGCGCTTACCAAGACCCAGCGCTTCGTCTTCGTCA
TCCTGCCGCAGGCGCTGCGCATCGCGGTGCCGCCCACGGTGGGCTTCCTGGTGCAGATCGTGAAGAACACCTCCTATTCG
GTGGTGATCAACTTCTTCGACCTCACCTATTCGGCGAAGGTGATCAATAACGCCACCTACAAGCCGTTCACGGTCTTCAC
CATCGCGGCGCTGATCTATTTCGCCATCTGCTTTCCCATGTCGCTTCTGGCGAGCCGGTTCGACCGCCGGCTGCACCGCA
GCTGA

Upstream 100 bases:

>100_bases
TACCTCGCCATGGCCTCGCTGCTGCGCCTCAGCCTGATGGGTGTGGCGCACGTGTCCTTCCCCCGCCTTCGCCGTCTCGG
CACGCCGCTGTGAGGATGCC

Downstream 100 bases:

>100_bases
GGACGCGCCATGGACCTGACCTCCCCCACCCTGACCTCCTCTGCTCTGCCCTCCCCCGCCATTCCCGCAGCCGATCCGCA
CGAGGGCCTTCGCATGACCA

Product: polar amino acid ABC transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MLGLTIEQIAYLFRGAGWTIVLSVLGFVGGTLLGLPVALARASKSRLLRFLSGLLVQLVQGIPLPVIMFVVYFGISIAGF
DVPALVAAGVAMTLYSGAYLGEIWKGCILAVPRTQWEAGECLALTKTQRFVFVILPQALRIAVPPTVGFLVQIVKNTSYS
VVINFFDLTYSAKVINNATYKPFTVFTIAALIYFAICFPMSLLASRFDRRLHRS

Sequences:

>Translated_214_residues
MLGLTIEQIAYLFRGAGWTIVLSVLGFVGGTLLGLPVALARASKSRLLRFLSGLLVQLVQGIPLPVIMFVVYFGISIAGF
DVPALVAAGVAMTLYSGAYLGEIWKGCILAVPRTQWEAGECLALTKTQRFVFVILPQALRIAVPPTVGFLVQIVKNTSYS
VVINFFDLTYSAKVINNATYKPFTVFTIAALIYFAICFPMSLLASRFDRRLHRS
>Mature_214_residues
MLGLTIEQIAYLFRGAGWTIVLSVLGFVGGTLLGLPVALARASKSRLLRFLSGLLVQLVQGIPLPVIMFVVYFGISIAGF
DVPALVAAGVAMTLYSGAYLGEIWKGCILAVPRTQWEAGECLALTKTQRFVFVILPQALRIAVPPTVGFLVQIVKNTSYS
VVINFFDLTYSAKVINNATYKPFTVFTIAALIYFAICFPMSLLASRFDRRLHRS

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=211, Percent_Identity=32.2274881516588, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI87082239, Length=203, Percent_Identity=31.0344827586207, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1787030, Length=206, Percent_Identity=30.0970873786408, Blast_Score=99, Evalue=1e-22,
Organism=Escherichia coli, GI1788645, Length=210, Percent_Identity=31.9047619047619, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1787087, Length=230, Percent_Identity=28.2608695652174, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI48994930, Length=131, Percent_Identity=32.824427480916, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788646, Length=197, Percent_Identity=25.8883248730964, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1786873, Length=216, Percent_Identity=27.7777777777778, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI1786874, Length=217, Percent_Identity=24.8847926267281, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23373; Mature: 23373

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGLTIEQIAYLFRGAGWTIVLSVLGFVGGTLLGLPVALARASKSRLLRFLSGLLVQLVQ
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GIPLPVIMFVVYFGISIAGFDVPALVAAGVAMTLYSGAYLGEIWKGCILAVPRTQWEAGE
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHEEECCCCCCCCCC
CLALTKTQRFVFVILPQALRIAVPPTVGFLVQIVKNTSYSVVINFFDLTYSAKVINNATY
EEEEECCCCEEEEEECHHHHEECCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCC
KPFTVFTIAALIYFAICFPMSLLASRFDRRLHRS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLGLTIEQIAYLFRGAGWTIVLSVLGFVGGTLLGLPVALARASKSRLLRFLSGLLVQLVQ
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GIPLPVIMFVVYFGISIAGFDVPALVAAGVAMTLYSGAYLGEIWKGCILAVPRTQWEAGE
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHEEECCCCCCCCCC
CLALTKTQRFVFVILPQALRIAVPPTVGFLVQIVKNTSYSVVINFFDLTYSAKVINNATY
EEEEECCCCEEEEEECHHHHEECCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHCCCCC
KPFTVFTIAALIYFAICFPMSLLASRFDRRLHRS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]