| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is livF [H]
Identifier: 154245512
GI number: 154245512
Start: 1776981
End: 1777685
Strand: Direct
Name: livF [H]
Synonym: Xaut_1566
Alternate gene names: 154245512
Gene position: 1776981-1777685 (Clockwise)
Preceding gene: 154245511
Following gene: 154245513
Centisome position: 33.47
GC content: 69.36
Gene sequence:
>705_bases ATGCTTGAGGTTCGCGACCTTTCCGCCGCCTATGGTGGACCGGACGTGCTCTCGTCCGTCACCCTGGAGGTGAAGGCGGG GGAGACGGTGGCCGTGCTGGGCGCCAACACGGCGGGCAAGACCACCCTGCTGCGTTCCATTTCCGGCCTCGTACCGAAGG CGCGCGGCACCATCGTCTTCGAGGGGGCGGCTCTGCTCGGCCGGGCGGCCCATACCATTCCCGGCCTCGGCATCGGCCAT GTGCCGGAGGGGCGCCACGTCTTTCCGCGCATGACCACGCTGGACAATCTGATGATGGGCGCCTTCGGCCATCGCAGCGC CCGCGACATTCCCGAGCGGGTGGAGCGGGTGTTCGCCCTGTTCCCGCGCCTGAAGGAGCGGCAGTCTCAGATGGCGGGCT CCATGTCCGGCGGCGAGCAGCAGATGGTCTCCATCGGCCGCGCCCTCATGGGCCAGCCGAAGCTGCTTTTGCTCGACGAG CCGAGCCATGGCCTCGCGCCCATCGTGGTGGACGAGCTGCACGCCGCCATCGGCGAGATCAACCGGCAGGGCGTGTCCGT GCTGCTGGTGGAACAGAACGCCATGCTGGCGCTGTCCGTGGCCCATCGCGGCTACGTGCTGGAGGCGGGCCACGTGGTGC TTTCGGGCACCGCGCAGGCCCTCTCCGACGATCCGGGCGTGCGTCGCGCCTATCTCGGCGTGTGA
Upstream 100 bases:
>100_bases GGCCGCCTGATCGCGCAGGGCACCCCCGCCGAGGTGGCCGCCGACCCGGCGGTGATCGAGGCCTATCTCGGCCATGGCGC CGCTGGCAAGGAGGCCGCTC
Downstream 100 bases:
>100_bases CGCCCCATCAAATCCCAGGGAGAAGAACGATGAAAGTGAAAGCCGGCGTCGCCCAGGTGGGCGCGGTGCCCTTCGATGTG GAGGCGTCCGTCGCCAAGGC
Product: ABC transporter-like protein
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 234; Mature: 234
Protein sequence:
>234_residues MLEVRDLSAAYGGPDVLSSVTLEVKAGETVAVLGANTAGKTTLLRSISGLVPKARGTIVFEGAALLGRAAHTIPGLGIGH VPEGRHVFPRMTTLDNLMMGAFGHRSARDIPERVERVFALFPRLKERQSQMAGSMSGGEQQMVSIGRALMGQPKLLLLDE PSHGLAPIVVDELHAAIGEINRQGVSVLLVEQNAMLALSVAHRGYVLEAGHVVLSGTAQALSDDPGVRRAYLGV
Sequences:
>Translated_234_residues MLEVRDLSAAYGGPDVLSSVTLEVKAGETVAVLGANTAGKTTLLRSISGLVPKARGTIVFEGAALLGRAAHTIPGLGIGH VPEGRHVFPRMTTLDNLMMGAFGHRSARDIPERVERVFALFPRLKERQSQMAGSMSGGEQQMVSIGRALMGQPKLLLLDE PSHGLAPIVVDELHAAIGEINRQGVSVLLVEQNAMLALSVAHRGYVLEAGHVVLSGTAQALSDDPGVRRAYLGV >Mature_234_residues MLEVRDLSAAYGGPDVLSSVTLEVKAGETVAVLGANTAGKTTLLRSISGLVPKARGTIVFEGAALLGRAAHTIPGLGIGH VPEGRHVFPRMTTLDNLMMGAFGHRSARDIPERVERVFALFPRLKERQSQMAGSMSGGEQQMVSIGRALMGQPKLLLLDE PSHGLAPIVVDELHAAIGEINRQGVSVLLVEQNAMLALSVAHRGYVLEAGHVVLSGTAQALSDDPGVRRAYLGV
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27477115, Length=176, Percent_Identity=27.8409090909091, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI153792144, Length=165, Percent_Identity=27.8787878787879, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI105990541, Length=235, Percent_Identity=26.8085106382979, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI45446740, Length=233, Percent_Identity=24.0343347639485, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI31657092, Length=218, Percent_Identity=24.7706422018349, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI150417984, Length=230, Percent_Identity=26.9565217391304, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI47078218, Length=233, Percent_Identity=24.0343347639485, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI27436953, Length=226, Percent_Identity=23.4513274336283, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI27262624, Length=159, Percent_Identity=28.9308176100629, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI27262626, Length=159, Percent_Identity=28.9308176100629, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI27881501, Length=209, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI30795238, Length=209, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI42490749, Length=223, Percent_Identity=27.8026905829596, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI87082268, Length=234, Percent_Identity=50.8547008547009, Blast_Score=216, Evalue=7e-58, Organism=Escherichia coli, GI1789593, Length=234, Percent_Identity=34.6153846153846, Blast_Score=133, Evalue=1e-32, Organism=Escherichia coli, GI1789864, Length=249, Percent_Identity=29.3172690763052, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1787029, Length=231, Percent_Identity=29.4372294372294, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1788225, Length=233, Percent_Identity=33.0472103004292, Blast_Score=107, Evalue=5e-25, Organism=Escherichia coli, GI87081791, Length=233, Percent_Identity=30.4721030042918, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1786872, Length=233, Percent_Identity=29.6137339055794, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI1787792, Length=239, Percent_Identity=29.7071129707113, Blast_Score=97, Evalue=6e-22, Organism=Escherichia coli, GI1789672, Length=241, Percent_Identity=27.8008298755187, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1790162, Length=240, Percent_Identity=27.5, Blast_Score=95, Evalue=3e-21, Organism=Escherichia coli, GI87081709, Length=231, Percent_Identity=29.004329004329, Blast_Score=94, Evalue=6e-21, Organism=Escherichia coli, GI87081834, Length=206, Percent_Identity=31.0679611650485, Blast_Score=91, Evalue=5e-20, Organism=Escherichia coli, GI1787089, Length=233, Percent_Identity=27.0386266094421, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1790190, Length=229, Percent_Identity=23.1441048034935, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI48995001, Length=220, Percent_Identity=30.4545454545455, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1790544, Length=248, Percent_Identity=30.241935483871, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI1786563, Length=214, Percent_Identity=32.2429906542056, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI48994943, Length=226, Percent_Identity=26.1061946902655, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1788761, Length=233, Percent_Identity=28.3261802575107, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1790525, Length=229, Percent_Identity=28.3842794759825, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1789873, Length=220, Percent_Identity=30.4545454545455, Blast_Score=87, Evalue=7e-19, Organism=Escherichia coli, GI1787370, Length=231, Percent_Identity=27.7056277056277, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787712, Length=222, Percent_Identity=27.4774774774775, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI1789991, Length=229, Percent_Identity=24.4541484716157, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI1790467, Length=230, Percent_Identity=27.8260869565217, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1788165, Length=226, Percent_Identity=29.646017699115, Blast_Score=80, Evalue=8e-17, Organism=Escherichia coli, GI1786319, Length=230, Percent_Identity=29.1304347826087, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789586, Length=243, Percent_Identity=27.5720164609054, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1788472, Length=216, Percent_Identity=24.537037037037, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI48994997, Length=238, Percent_Identity=30.2521008403361, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1788450, Length=226, Percent_Identity=27.4336283185841, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1788210, Length=237, Percent_Identity=24.8945147679325, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1786398, Length=213, Percent_Identity=26.7605633802817, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787105, Length=222, Percent_Identity=28.8288288288288, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI87081782, Length=245, Percent_Identity=26.9387755102041, Blast_Score=74, Evalue=8e-15, Organism=Escherichia coli, GI87082267, Length=231, Percent_Identity=26.8398268398268, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1786253, Length=235, Percent_Identity=25.531914893617, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787500, Length=241, Percent_Identity=27.3858921161826, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1789032, Length=228, Percent_Identity=25, Blast_Score=70, Evalue=8e-14, Organism=Escherichia coli, GI1788897, Length=213, Percent_Identity=27.6995305164319, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1786703, Length=209, Percent_Identity=29.6650717703349, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787164, Length=231, Percent_Identity=29.8701298701299, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI48994883, Length=245, Percent_Identity=23.6734693877551, Blast_Score=67, Evalue=7e-13, Organism=Escherichia coli, GI1789891, Length=222, Percent_Identity=29.2792792792793, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1788506, Length=215, Percent_Identity=24.6511627906977, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787112, Length=227, Percent_Identity=30.3964757709251, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787143, Length=236, Percent_Identity=25.8474576271186, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1790739, Length=240, Percent_Identity=27.5, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1788002, Length=217, Percent_Identity=27.1889400921659, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI115533608, Length=231, Percent_Identity=25.5411255411255, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193202349, Length=218, Percent_Identity=26.1467889908257, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI71983523, Length=227, Percent_Identity=25.1101321585903, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71983516, Length=227, Percent_Identity=25.1101321585903, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71983510, Length=227, Percent_Identity=25.1101321585903, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17510237, Length=230, Percent_Identity=24.7826086956522, Blast_Score=68, Evalue=3e-12, Organism=Drosophila melanogaster, GI24650855, Length=225, Percent_Identity=27.5555555555556, Blast_Score=81, Evalue=5e-16, Organism=Drosophila melanogaster, GI24650853, Length=225, Percent_Identity=27.5555555555556, Blast_Score=81, Evalue=5e-16, Organism=Drosophila melanogaster, GI24666092, Length=193, Percent_Identity=26.9430051813472, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI281362751, Length=217, Percent_Identity=28.110599078341, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI116007184, Length=209, Percent_Identity=25.3588516746411, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI221500365, Length=209, Percent_Identity=25.3588516746411, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24648314, Length=226, Percent_Identity=26.9911504424779, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24582014, Length=187, Percent_Identity=31.5508021390374, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24582012, Length=187, Percent_Identity=31.5508021390374, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI85725262, Length=188, Percent_Identity=28.7234042553192, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI221512771, Length=219, Percent_Identity=25.5707762557078, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI28574533, Length=217, Percent_Identity=24.8847926267281, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24581191, Length=210, Percent_Identity=26.1904761904762, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24581189, Length=210, Percent_Identity=26.1904761904762, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24581193, Length=210, Percent_Identity=26.1904761904762, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24581195, Length=210, Percent_Identity=26.1904761904762, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24643674, Length=171, Percent_Identity=25.7309941520468, Blast_Score=69, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 24651; Mature: 24651
Theoretical pI: Translated: 8.02; Mature: 8.02
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEVRDLSAAYGGPDVLSSVTLEVKAGETVAVLGANTAGKTTLLRSISGLVPKARGTIVF CCCCCCCCCCCCCHHHHHHEEEEEECCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE EGAALLGRAAHTIPGLGIGHVPEGRHVFPRMTTLDNLMMGAFGHRSARDIPERVERVFAL ECHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH FPRLKERQSQMAGSMSGGEQQMVSIGRALMGQPKLLLLDEPSHGLAPIVVDELHAAIGEI HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH NRQGVSVLLVEQNAMLALSVAHRGYVLEAGHVVLSGTAQALSDDPGVRRAYLGV CCCCEEEEEEECCCEEEEEECCCCEEEECCCEEEECCHHHHCCCCCCCCCCCCC >Mature Secondary Structure MLEVRDLSAAYGGPDVLSSVTLEVKAGETVAVLGANTAGKTTLLRSISGLVPKARGTIVF CCCCCCCCCCCCCHHHHHHEEEEEECCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEE EGAALLGRAAHTIPGLGIGHVPEGRHVFPRMTTLDNLMMGAFGHRSARDIPERVERVFAL ECHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH FPRLKERQSQMAGSMSGGEQQMVSIGRALMGQPKLLLLDEPSHGLAPIVVDELHAAIGEI HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH NRQGVSVLLVEQNAMLALSVAHRGYVLEAGHVVLSGTAQALSDDPGVRRAYLGV CCCCEEEEEEECCCEEEEEECCCCEEEECCCEEEECCHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]