Click here to switch to the map view.

The map label for this gene is ynfA [C]

Identifier: 154245327

GI number: 154245327

Start: 1583629

End: 1583949

Strand: Reverse

Name: ynfA [C]

Synonym: Xaut_1380

Alternate gene names: 154245327

Gene position: 1583949-1583629 (Counterclockwise)

Preceding gene: 154245328

Following gene: 154245325

Centisome position: 29.84

GC content: 70.72

Gene sequence:

>321_bases
ATGACGCTGCCCGCCTTCCTCTTCGCCGCCCTTGGGGAAATCGCCGGCTGTTTCGCGGTCTGGCATGTGGTGCGGCTCGG
CGGGTCGCACTGGTGGCTGCTGCCCGGCATCGTGAGCCTTGCCGCCTTCGCCTATGCCCTCACCTTCGTGGAGGCGGAGG
CTGCCGGCCGGGCGTTCGCGGCCTATGGCGGCATCTATATCCTGTCGTCGCTGGTCTGGATGTGGACGGTGGAAGGCGTG
CGCCCCGACCGTTGGGACGCCACCGGCGCGGCTCTGTGCCTCGCCGGGGCGGCGGTCATCGTCTTCGGCCCGCGGGGCTG
A

Upstream 100 bases:

>100_bases
CGGCGCCTGCTTGCGCAGCAGCCCGGCTGGTGGGTGAAGCCCACACTTCTGCGATAGGGCTGAACCCCACCATGACGCGC
CCCCCGAAGACGTTGCCCCG

Downstream 100 bases:

>100_bases
TCTCAATCAGGCCCGCGTGGCGCGGCCTTCTCGCGGGCGAGCAGGCGCTGGTAGACCCAGCCCATGGCCACCAGAACCAG
TCCGAGGCCGATGAAGGAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MTLPAFLFAALGEIAGCFAVWHVVRLGGSHWWLLPGIVSLAAFAYALTFVEAEAAGRAFAAYGGIYILSSLVWMWTVEGV
RPDRWDATGAALCLAGAAVIVFGPRG

Sequences:

>Translated_106_residues
MTLPAFLFAALGEIAGCFAVWHVVRLGGSHWWLLPGIVSLAAFAYALTFVEAEAAGRAFAAYGGIYILSSLVWMWTVEGV
RPDRWDATGAALCLAGAAVIVFGPRG
>Mature_105_residues
TLPAFLFAALGEIAGCFAVWHVVRLGGSHWWLLPGIVSLAAFAYALTFVEAEAAGRAFAAYGGIYILSSLVWMWTVEGVR
PDRWDATGAALCLAGAAVIVFGPRG

Specific function: Unknown

COG id: COG1742

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0060 family

Homologues:

Organism=Escherichia coli, GI1787865, Length=98, Percent_Identity=43.8775510204082, Blast_Score=75, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1380_XANP2 (A7IF35)

Other databases:

- EMBL:   CP000781
- RefSeq:   YP_001416285.1
- STRING:   A7IF35
- GeneID:   5420739
- GenomeReviews:   CP000781_GR
- KEGG:   xau:Xaut_1380
- eggNOG:   COG1742
- HOGENOM:   HBG313568
- OMA:   ALWVIPA
- ProtClustDB:   CLSK979408
- BioCyc:   XAUT78245:XAUT_1380-MONOMER
- HAMAP:   MF_00010
- InterPro:   IPR003844

Pfam domain/function: PF02694 UPF0060

EC number: NA

Molecular weight: Translated: 11216; Mature: 11085

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xd50e8a4)-; HASH(0xf66003c)-; HASH(0xfc3b8ac)-; HASH(0xe408d88)-;

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPAFLFAALGEIAGCFAVWHVVRLGGSHWWLLPGIVSLAAFAYALTFVEAEAAGRAFA
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHH
AYGGIYILSSLVWMWTVEGVRPDRWDATGAALCLAGAAVIVFGPRG
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCEEEEECCCH
>Mature Secondary Structure 
TLPAFLFAALGEIAGCFAVWHVVRLGGSHWWLLPGIVSLAAFAYALTFVEAEAAGRAFA
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHH
AYGGIYILSSLVWMWTVEGVRPDRWDATGAALCLAGAAVIVFGPRG
HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCEEEEECCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA