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The map label for this gene is yafC [H]

Identifier: 154245318

GI number: 154245318

Start: 1573810

End: 1574736

Strand: Reverse

Name: yafC [H]

Synonym: Xaut_1371

Alternate gene names: 154245318

Gene position: 1574736-1573810 (Counterclockwise)

Preceding gene: 154245320

Following gene: 154245313

Centisome position: 29.66

GC content: 70.01

Gene sequence:

>927_bases
ATGATCGCCTGGGACGATTTCCGCCTGGTGCAGGCCATTGCGCAGAGCAGCTCGCTGGCCGGGGCGGCCGAGCAGCTGGG
GGTGAACCACTCCACCGTGTTCCGCCGGCTCGGCGCGCTGGAGGAGCAGCTCGGCGCCCGCCTGTTCGAGCGCGCGCGCT
CGGGCTACGTGCCCACCGCCATCGGCGAGGAGATGGTGCGCCTCGCCGAGCGCATGGCCGACGAGGTGCTGTCCGTGGAG
CGCCGCATCACCGGGCAGGACCTGAGGCCCTCCGGCGAATTGCGCGTGACCACCAACGACACCCTGCTGGTGCACATGCT
GACGCCGGTGTTCGCCTCGTTCCTCAAGGCCTACCCGGAGATCCGGCTGGACGTGGTCATCTCCAACCAGTCCCTCAGCC
TGTCGAAGCGCGACGCCGATGTGGCCATCCGCGCCAGCGACCGGCCGGGGGATACGCTGGTGGGCCGGCGCATGGCCTCC
ATCGCCTGGGCCATCTATGCCCGCGCCGACCTCGCGCCCGCGACCCCGCTCGGTGCCGGCGATTTCAGGCGTTACGACTG
GATCGGATTTTCCGACAATCTCGGCGGCATCAAGCCGGCCAAATGGTTGCGCGAGCGGGTGGACGAGGACAGGCTGGTCT
ATCGCGTCAACACGGTGCTGGGGCTGGCGGAAGCGGCCGCCGAGGGCATCGGGCTCGCGGTGCTGCCCTGCTTCATCGCG
GCGGTGACGCCCGGCCTCGTCCAGATCGTGCCGCCGCAGCCCGAGATGGAATCCGGCCTGTGGCTGCTCACCCATCCGGA
CATCAAGGCCACGGCACGGGTGCGCACCTTCATGGAGCATGCGGGCCGCGAGATCGGCAAGCTGCGCGGCCGCATCGAGG
GACGCGAGGCGCTGGTCTCCGGTGAAGGCCAGATGGTCGAGGGCTGA

Upstream 100 bases:

>100_bases
AATCAAGCTGGAGTTTGCATCCACGCAAATCACATCCTCGCGTGGGGCGAGGGCGCGGGACGCGAATGACCGCAGGACCA
ACGAGCATGTGGGATTGGGA

Downstream 100 bases:

>100_bases
CCGGCCGGGATTATTCCGCGGAGGCTTCGGTGGTGGAGTTGCGGGGCTTGGCCTTGGCACGGCGGGAAGCCACCTGCGAC
TTGTCCCCGCCGGCGCTCAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MIAWDDFRLVQAIAQSSSLAGAAEQLGVNHSTVFRRLGALEEQLGARLFERARSGYVPTAIGEEMVRLAERMADEVLSVE
RRITGQDLRPSGELRVTTNDTLLVHMLTPVFASFLKAYPEIRLDVVISNQSLSLSKRDADVAIRASDRPGDTLVGRRMAS
IAWAIYARADLAPATPLGAGDFRRYDWIGFSDNLGGIKPAKWLRERVDEDRLVYRVNTVLGLAEAAAEGIGLAVLPCFIA
AVTPGLVQIVPPQPEMESGLWLLTHPDIKATARVRTFMEHAGREIGKLRGRIEGREALVSGEGQMVEG

Sequences:

>Translated_308_residues
MIAWDDFRLVQAIAQSSSLAGAAEQLGVNHSTVFRRLGALEEQLGARLFERARSGYVPTAIGEEMVRLAERMADEVLSVE
RRITGQDLRPSGELRVTTNDTLLVHMLTPVFASFLKAYPEIRLDVVISNQSLSLSKRDADVAIRASDRPGDTLVGRRMAS
IAWAIYARADLAPATPLGAGDFRRYDWIGFSDNLGGIKPAKWLRERVDEDRLVYRVNTVLGLAEAAAEGIGLAVLPCFIA
AVTPGLVQIVPPQPEMESGLWLLTHPDIKATARVRTFMEHAGREIGKLRGRIEGREALVSGEGQMVEG
>Mature_308_residues
MIAWDDFRLVQAIAQSSSLAGAAEQLGVNHSTVFRRLGALEEQLGARLFERARSGYVPTAIGEEMVRLAERMADEVLSVE
RRITGQDLRPSGELRVTTNDTLLVHMLTPVFASFLKAYPEIRLDVVISNQSLSLSKRDADVAIRASDRPGDTLVGRRMAS
IAWAIYARADLAPATPLGAGDFRRYDWIGFSDNLGGIKPAKWLRERVDEDRLVYRVNTVLGLAEAAAEGIGLAVLPCFIA
AVTPGLVQIVPPQPEMESGLWLLTHPDIKATARVRTFMEHAGREIGKLRGRIEGREALVSGEGQMVEG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=190, Percent_Identity=28.9473684210526, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787589, Length=234, Percent_Identity=25.6410256410256, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=23.6486486486486, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33727; Mature: 33727

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAWDDFRLVQAIAQSSSLAGAAEQLGVNHSTVFRRLGALEEQLGARLFERARSGYVPTA
CCCCHHHHHHHHHHHHCHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
IGEEMVRLAERMADEVLSVERRITGQDLRPSGELRVTTNDTLLVHMLTPVFASFLKAYPE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEHHHHHHHHHHHHHHHCCC
IRLDVVISNQSLSLSKRDADVAIRASDRPGDTLVGRRMASIAWAIYARADLAPATPLGAG
EEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
DFRRYDWIGFSDNLGGIKPAKWLRERVDEDRLVYRVNTVLGLAEAAAEGIGLAVLPCFIA
CCCCEECCCCCCCCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHH
AVTPGLVQIVPPQPEMESGLWLLTHPDIKATARVRTFMEHAGREIGKLRGRIEGREALVS
HHCCCCEEEECCCCCHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEC
GEGQMVEG
CCCCCCCC
>Mature Secondary Structure
MIAWDDFRLVQAIAQSSSLAGAAEQLGVNHSTVFRRLGALEEQLGARLFERARSGYVPTA
CCCCHHHHHHHHHHHHCHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
IGEEMVRLAERMADEVLSVERRITGQDLRPSGELRVTTNDTLLVHMLTPVFASFLKAYPE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEHHHHHHHHHHHHHHHCCC
IRLDVVISNQSLSLSKRDADVAIRASDRPGDTLVGRRMASIAWAIYARADLAPATPLGAG
EEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
DFRRYDWIGFSDNLGGIKPAKWLRERVDEDRLVYRVNTVLGLAEAAAEGIGLAVLPCFIA
CCCCEECCCCCCCCCCCCHHHHHHHHCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHH
AVTPGLVQIVPPQPEMESGLWLLTHPDIKATARVRTFMEHAGREIGKLRGRIEGREALVS
HHCCCCEEEECCCCCHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEC
GEGQMVEG
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]