| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is nfdA [H]
Identifier: 154245222
GI number: 154245222
Start: 1467365
End: 1469341
Strand: Reverse
Name: nfdA [H]
Synonym: Xaut_1274
Alternate gene names: 154245222
Gene position: 1469341-1467365 (Counterclockwise)
Preceding gene: 154245223
Following gene: 154245221
Centisome position: 27.68
GC content: 68.39
Gene sequence:
>1977_bases ATGCCCGACCGAAAGCTGCCCGACCGAAAGCTGCCCGATCGCCGCCAGTTCATCGCCGCGGGGCTCATGGCCGCCGCCGG CCTTGTCCCCACCTCCCCGAAGGCGCAGACCATGAGCGAGACCGCCGACCTCATCCTCTTCAACGGCAAGGTCACCACCC TCGACCGCACCAATCCGCAGGCTGAGGCGGTGGCGGTGAAGGACGGGCGCATCCTGTTCGCCGGCACCACCGCCGACGCC ATGCGCCACGCCGGGACCCTGACGAAAATCATCGACGTGGGCGGCCGGCGGATCATTCCCGGCCTCATCGACAGCCACAT GCACATCATCCGCGGCGGGCTGAACTACAATATGGAGCTGCGCTGGGACGGGGTGCGCTCCCTCGACCACGCCATGGAGA TGCTGAGGAAACAGGTGGCCGTGACCCCGCCGCCGCAATGGGTGCGCGTGGTGGGCGGCTTCACCGAGCACCAGTTCGCC GAGAAGCGCCTGCCCACGCTGGAGGAGCTGAACGCCGCCGCCCCCGACACGCCGGTGTTCATCCTCCACCTCTACGACCG CGCTTTGCTCAATGCGGCGGCCCTGCGCGTGGTAGGCTACACCAAGGACACGCCCAACCCGCCCGGCGGCGAGATCGTGC GCGATGCGGCCGGCAATCCCACCGGCCTGCTTTTGGCCCAGCCCAACGCCACCATCCTCTATTCGACGCTGGCCAAGGGT CCCAAGCTGCCCGCCGAATACCAGAAGAACTCCACCCGCCACTTCATGCGCGAAGTGAACCGGCTGGGCGTCACCAGCGT CATCGACGCCGGCGGCGGCTTCCAGAACTATCCGGACGATTATGCGGTGATCGAGGAGTTGCACCGCGACGGGCAGCTTT CCGTGCGCATCGCCTACAATCTCTTCACCCAGAAGCCGAAGCAGGAGCTGGCGGATTTCTCCGGCTGGTCGAAACAGGTC AAGCCCGGCCAGGGCGACGACCTCTACCGCAACAACGGCGCCGGCGAGATGCTGGTCTATTCCGCCGCCGACTTCGAGGA CTTCCAGGTGGCCCGGCCCGACATGCCGCCCAACATGGAAGGCGACCTGGAACCGGTCATCCGCCTGCTGGCCGAGAACC GCTGGCCGTGGCGGCTGCACGCCACCTATGACGAGACCATCTCGCGCGCCCTCGACGTGTTCGAGAAGGTGAACAAGGAC GTGCCGCTCAAGGGCCTCAACTGGTTCTTCGACCATGCCGAGACCATCACCGACCGCAACATCGACCGCATCGCGGCGCT GGGGGGCGGCATCGCCGTGCAGCATCGCATGGCGTTCCAGGGCGAATATTTCGTGGAGCGCTACGGCGCCGGCAGGGCGG AGCGCTCCCCGCCCATCCGCCGCATGCTGGACGCCGGCATTCCGGTGGGCGCCGGCACCGACGCCACCCGCGTCGCCTCC TACAATCCCTGGGTGTCCCTGTCCTGGCTGGTGACGGGCAAGACTTTGGGCGGCCTCTCCCTCTACCCGCCGTCCAACCT GCTCGACCGCGAGAGTGCGCTGCGGCTGTGGACTGAGGCCAATACCTGGTTCTCCTCCGAGCCCGACAAGAAGGGGCAGG TGAAGGCCGGCCAGCTCGCCGACCTCGTGGTGCTGTCGGACGATTATTTCTCCGTGCCCGAGGACAGGATCCAGGACATC ACCAGCGTGCTCACGCTGCTGGGCGGCACGCCGGTGCATGGCGACGGCGACTTCAAGACGCTCGCGCCCGACCTGCCGCC GCCCATGCCCGACTGGTCGCCGGTGCGCACCTTCGGCGGCTACCAGAAGCGGGCGGAAACCGGCGAGCGCAAATACGCCT TCGCCGCCGCCTGCGGCTGCGCCACCGCCTGCGGCGTCCACGGCCACGCCCACGCCAGCGCGCTGGCGGCGCAGGTGCCC GCCGCCGACGAACGCTCCTTCTGGGGCGCGCTCGGCTGCGCCTGCTGGGCGTTCTGA
Upstream 100 bases:
>100_bases CAACTGCCGGGCCGGCAGAGCGCCGCAGCGGAGCCGCCGCAAGACGCGCATCTCAACACGCCGCCTCACACCCCTCCCGG AACCTGAGCGGAAGAGCGCC
Downstream 100 bases:
>100_bases TGGGGGCGGAGGTGGTGGCGCCTTGAGATGCTTGCACACCGTCGCCGTCCGGCTTGACCGGACGGCCCATCGCCCCGCCG GACCGACGCCTCCGGGACAA
Product: amidohydrolase 3
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 658; Mature: 657
Protein sequence:
>658_residues MPDRKLPDRKLPDRRQFIAAGLMAAAGLVPTSPKAQTMSETADLILFNGKVTTLDRTNPQAEAVAVKDGRILFAGTTADA MRHAGTLTKIIDVGGRRIIPGLIDSHMHIIRGGLNYNMELRWDGVRSLDHAMEMLRKQVAVTPPPQWVRVVGGFTEHQFA EKRLPTLEELNAAAPDTPVFILHLYDRALLNAAALRVVGYTKDTPNPPGGEIVRDAAGNPTGLLLAQPNATILYSTLAKG PKLPAEYQKNSTRHFMREVNRLGVTSVIDAGGGFQNYPDDYAVIEELHRDGQLSVRIAYNLFTQKPKQELADFSGWSKQV KPGQGDDLYRNNGAGEMLVYSAADFEDFQVARPDMPPNMEGDLEPVIRLLAENRWPWRLHATYDETISRALDVFEKVNKD VPLKGLNWFFDHAETITDRNIDRIAALGGGIAVQHRMAFQGEYFVERYGAGRAERSPPIRRMLDAGIPVGAGTDATRVAS YNPWVSLSWLVTGKTLGGLSLYPPSNLLDRESALRLWTEANTWFSSEPDKKGQVKAGQLADLVVLSDDYFSVPEDRIQDI TSVLTLLGGTPVHGDGDFKTLAPDLPPPMPDWSPVRTFGGYQKRAETGERKYAFAAACGCATACGVHGHAHASALAAQVP AADERSFWGALGCACWAF
Sequences:
>Translated_658_residues MPDRKLPDRKLPDRRQFIAAGLMAAAGLVPTSPKAQTMSETADLILFNGKVTTLDRTNPQAEAVAVKDGRILFAGTTADA MRHAGTLTKIIDVGGRRIIPGLIDSHMHIIRGGLNYNMELRWDGVRSLDHAMEMLRKQVAVTPPPQWVRVVGGFTEHQFA EKRLPTLEELNAAAPDTPVFILHLYDRALLNAAALRVVGYTKDTPNPPGGEIVRDAAGNPTGLLLAQPNATILYSTLAKG PKLPAEYQKNSTRHFMREVNRLGVTSVIDAGGGFQNYPDDYAVIEELHRDGQLSVRIAYNLFTQKPKQELADFSGWSKQV KPGQGDDLYRNNGAGEMLVYSAADFEDFQVARPDMPPNMEGDLEPVIRLLAENRWPWRLHATYDETISRALDVFEKVNKD VPLKGLNWFFDHAETITDRNIDRIAALGGGIAVQHRMAFQGEYFVERYGAGRAERSPPIRRMLDAGIPVGAGTDATRVAS YNPWVSLSWLVTGKTLGGLSLYPPSNLLDRESALRLWTEANTWFSSEPDKKGQVKAGQLADLVVLSDDYFSVPEDRIQDI TSVLTLLGGTPVHGDGDFKTLAPDLPPPMPDWSPVRTFGGYQKRAETGERKYAFAAACGCATACGVHGHAHASALAAQVP AADERSFWGALGCACWAF >Mature_657_residues PDRKLPDRKLPDRRQFIAAGLMAAAGLVPTSPKAQTMSETADLILFNGKVTTLDRTNPQAEAVAVKDGRILFAGTTADAM RHAGTLTKIIDVGGRRIIPGLIDSHMHIIRGGLNYNMELRWDGVRSLDHAMEMLRKQVAVTPPPQWVRVVGGFTEHQFAE KRLPTLEELNAAAPDTPVFILHLYDRALLNAAALRVVGYTKDTPNPPGGEIVRDAAGNPTGLLLAQPNATILYSTLAKGP KLPAEYQKNSTRHFMREVNRLGVTSVIDAGGGFQNYPDDYAVIEELHRDGQLSVRIAYNLFTQKPKQELADFSGWSKQVK PGQGDDLYRNNGAGEMLVYSAADFEDFQVARPDMPPNMEGDLEPVIRLLAENRWPWRLHATYDETISRALDVFEKVNKDV PLKGLNWFFDHAETITDRNIDRIAALGGGIAVQHRMAFQGEYFVERYGAGRAERSPPIRRMLDAGIPVGAGTDATRVASY NPWVSLSWLVTGKTLGGLSLYPPSNLLDRESALRLWTEANTWFSSEPDKKGQVKAGQLADLVVLSDDYFSVPEDRIQDIT SVLTLLGGTPVHGDGDFKTLAPDLPPPMPDWSPVRTFGGYQKRAETGERKYAFAAACGCATACGVHGHAHASALAAQVPA ADERSFWGALGCACWAF
Specific function: Hydrolyzes N-substituted formamides, but not amides. N- benzylformamide is the preferred substrate, while N-butylformamide is hydrolyzed at a much lower rate. Has very low activity towards allylformamide, N-(2-cyclohex-1-enylethyl)formamide and N-(alpha-
COG id: COG1574
COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013108 - InterPro: IPR011059 [H]
Pfam domain/function: PF07969 Amidohydro_3 [H]
EC number: =3.5.1.91 [H]
Molecular weight: Translated: 72148; Mature: 72016
Theoretical pI: Translated: 6.57; Mature: 6.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDRKLPDRKLPDRRQFIAAGLMAAAGLVPTSPKAQTMSETADLILFNGKVTTLDRTNPQ CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCEEEECCEEEEEECCCCC AEAVAVKDGRILFAGTTADAMRHAGTLTKIIDVGGRRIIPGLIDSHMHIIRGGLNYNMEL CEEEEEECCEEEEEECCHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHCCCCCCCEEE RWDGVRSLDHAMEMLRKQVAVTPPPQWVRVVGGFTEHQFAEKRLPTLEELNAAAPDTPVF EECHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCCCCCEE ILHLYDRALLNAAALRVVGYTKDTPNPPGGEIVRDAAGNPTGLLLAQPNATILYSTLAKG EEEHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHCCCCCCEEEEECCCCEEEEHHHHCC PKLPAEYQKNSTRHFMREVNRLGVTSVIDAGGGFQNYPDDYAVIEELHRDGQLSVRIAYN CCCCHHHHCCHHHHHHHHHHHCCCHHEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEEEE LFTQKPKQELADFSGWSKQVKPGQGDDLYRNNGAGEMLVYSAADFEDFQVARPDMPPNME HHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCC GDLEPVIRLLAENRWPWRLHATYDETISRALDVFEKVNKDVPLKGLNWFFDHAETITDRN CCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC IDRIAALGGGIAVQHRMAFQGEYFVERYGAGRAERSPPIRRMLDAGIPVGAGTDATRVAS HHHHHHHCCCEEEEEHHHHCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEC YNPWVSLSWLVTGKTLGGLSLYPPSNLLDRESALRLWTEANTWFSSEPDKKGQVKAGQLA CCCCEEEEEEEECCCCCCEEECCCCCHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEE DLVVLSDDYFSVPEDRIQDITSVLTLLGGTPVHGDGDFKTLAPDLPPPMPDWSPVRTFGG EEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC YQKRAETGERKYAFAAACGCATACGVHGHAHASALAAQVPAADERSFWGALGCACWAF HHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure PDRKLPDRKLPDRRQFIAAGLMAAAGLVPTSPKAQTMSETADLILFNGKVTTLDRTNPQ CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCEEEECCEEEEEECCCCC AEAVAVKDGRILFAGTTADAMRHAGTLTKIIDVGGRRIIPGLIDSHMHIIRGGLNYNMEL CEEEEEECCEEEEEECCHHHHHHHHHHHHHHHCCCCEECCHHHHHHHHHHCCCCCCCEEE RWDGVRSLDHAMEMLRKQVAVTPPPQWVRVVGGFTEHQFAEKRLPTLEELNAAAPDTPVF EECHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHCCCHHHHCCCCCCCCEE ILHLYDRALLNAAALRVVGYTKDTPNPPGGEIVRDAAGNPTGLLLAQPNATILYSTLAKG EEEHHHHHHHHHHHHEEEEECCCCCCCCCCHHHHHCCCCCCEEEEECCCCEEEEHHHHCC PKLPAEYQKNSTRHFMREVNRLGVTSVIDAGGGFQNYPDDYAVIEELHRDGQLSVRIAYN CCCCHHHHCCHHHHHHHHHHHCCCHHEEECCCCCCCCCCHHHHHHHHCCCCCEEEEEEEE LFTQKPKQELADFSGWSKQVKPGQGDDLYRNNGAGEMLVYSAADFEDFQVARPDMPPNME HHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEECCCCCCCCC GDLEPVIRLLAENRWPWRLHATYDETISRALDVFEKVNKDVPLKGLNWFFDHAETITDRN CCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC IDRIAALGGGIAVQHRMAFQGEYFVERYGAGRAERSPPIRRMLDAGIPVGAGTDATRVAS HHHHHHHCCCEEEEEHHHHCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEC YNPWVSLSWLVTGKTLGGLSLYPPSNLLDRESALRLWTEANTWFSSEPDKKGQVKAGQLA CCCCEEEEEEEECCCCCCEEECCCCCHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEE DLVVLSDDYFSVPEDRIQDITSVLTLLGGTPVHGDGDFKTLAPDLPPPMPDWSPVRTFGG EEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC YQKRAETGERKYAFAAACGCATACGVHGHAHASALAAQVPAADERSFWGALGCACWAF HHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA