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The map label for this gene is yjfH [C]

Identifier: 154245126

GI number: 154245126

Start: 1354044

End: 1354850

Strand: Direct

Name: yjfH [C]

Synonym: Xaut_1178

Alternate gene names: 154245126

Gene position: 1354044-1354850 (Clockwise)

Preceding gene: 154245125

Following gene: 154245128

Centisome position: 25.51

GC content: 71.38

Gene sequence:

>807_bases
ATGATCCTTCCGATTGCTGAGGCCGACGATCCGCGCATCGCGGATTTCCGGGACGTGCGGGAGCGCGACCTCGTGGGCCG
GCAGGGCGCCTTCATGGCCGAGGGGGAGGTGGTGCTGCGCCTCCTCGTGTCCCGTCTCGGCGGAGCGGACAGCCACTGCC
TGCGCGCGCTGCTCCTGTCCGAAGCGCAGGCGCAGCGGCTCGGAGATGTCATCGCCGCCCTGCCGCAGGACGTGCCCGTC
TATGTGGCGGGGCAGAAGGTGATGGACCAGGTGGTGGGCTTTCCCATCCATCGCGGCATCCTCGCGCTCGGAGTGGCGCG
GCCGCTGCCGGAGCCTGCGGCGTTGCTGGAGCGACTGGGGGAGCGGGCGCTGGTGGTGGCGGCCCTCGGCCTCACCAATC
ACGACAATATGGGCGGCATCTTCCGTAATGCGGCGGCCTTTGGCGCCGATGCGGTGCTGATCGATGCCGCCTGCTGCGAT
CCGCTCTACCGCAAGGCGATCCGGGTGTCGGTGGGGGCAAGCCTGGTGGTGCCGTTCGCGCGGGTGGCGGACGGGGCGGC
GGCCGTGGAGTTGCTGAAGGCGCGCGGCTTCGAGGTGGTGGCGCTGTCGCCGGCCGGGCGGGAGCCTCTATCGCGGCTGG
TCCGGCCGCCGCGCGTGGCGGCCCTGTTCGGCACCGAGGGGCCGGGCCTGCCGGATGCGGTGATGGCCATGACGCGCACC
GTGGCCATTCCCATGGCGGCCGGCTTCGACAGCCTGAACGTCGCGACCACCAGCGGCATCGTCCTGCATCATTTGTCGGG
GGTGTGA

Upstream 100 bases:

>100_bases
TCGCTGATCCGTCGCGCCCGGTGGAACGGGTGGAGATGCCCCCCAAGCTGGTGGTGCGCGCCACCACAGCCCCGCCGGTG
CCGGTGAAGCGCCGGCCCCT

Downstream 100 bases:

>100_bases
GGGATTCATACCATCGGCCCCGGTCTTCGACCGAAGCCAAGTGGGTTACGCTCAGGCGCCGCGCGGGCTTGGCCGAAGGC
CCATGAGTCAAGCTCAAGGG

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MILPIAEADDPRIADFRDVRERDLVGRQGAFMAEGEVVLRLLVSRLGGADSHCLRALLLSEAQAQRLGDVIAALPQDVPV
YVAGQKVMDQVVGFPIHRGILALGVARPLPEPAALLERLGERALVVAALGLTNHDNMGGIFRNAAAFGADAVLIDAACCD
PLYRKAIRVSVGASLVVPFARVADGAAAVELLKARGFEVVALSPAGREPLSRLVRPPRVAALFGTEGPGLPDAVMAMTRT
VAIPMAAGFDSLNVATTSGIVLHHLSGV

Sequences:

>Translated_268_residues
MILPIAEADDPRIADFRDVRERDLVGRQGAFMAEGEVVLRLLVSRLGGADSHCLRALLLSEAQAQRLGDVIAALPQDVPV
YVAGQKVMDQVVGFPIHRGILALGVARPLPEPAALLERLGERALVVAALGLTNHDNMGGIFRNAAAFGADAVLIDAACCD
PLYRKAIRVSVGASLVVPFARVADGAAAVELLKARGFEVVALSPAGREPLSRLVRPPRVAALFGTEGPGLPDAVMAMTRT
VAIPMAAGFDSLNVATTSGIVLHHLSGV
>Mature_268_residues
MILPIAEADDPRIADFRDVRERDLVGRQGAFMAEGEVVLRLLVSRLGGADSHCLRALLLSEAQAQRLGDVIAALPQDVPV
YVAGQKVMDQVVGFPIHRGILALGVARPLPEPAALLERLGERALVVAALGLTNHDNMGGIFRNAAAFGADAVLIDAACCD
PLYRKAIRVSVGASLVVPFARVADGAAAVELLKARGFEVVALSPAGREPLSRLVRPPRVAALFGTEGPGLPDAVMAMTRT
VAIPMAAGFDSLNVATTSGIVLHHLSGV

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Escherichia coli, GI1790623, Length=218, Percent_Identity=27.5229357798165, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537 [H]

Pfam domain/function: PF00588 SpoU_methylase [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 28023; Mature: 28023

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS00012 PHOSPHOPANTETHEINE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILPIAEADDPRIADFRDVRERDLVGRQGAFMAEGEVVLRLLVSRLGGADSHCLRALLLS
CEECCCCCCCCCCHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHCCCHHHHHHHHHHH
EAQAQRLGDVIAALPQDVPVYVAGQKVMDQVVGFPIHRGILALGVARPLPEPAALLERLG
HHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHC
ERALVVAALGLTNHDNMGGIFRNAAAFGADAVLIDAACCDPLYRKAIRVSVGASLVVPFA
CCEEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEHHHCCHHHHHHHHHHCCCHHHHHHH
RVADGAAAVELLKARGFEVVALSPAGREPLSRLVRPPRVAALFGTEGPGLPDAVMAMTRT
HHHCHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHH
VAIPMAAGFDSLNVATTSGIVLHHLSGV
HHHHHHCCCCCCCHHHHCCHHHHHCCCC
>Mature Secondary Structure
MILPIAEADDPRIADFRDVRERDLVGRQGAFMAEGEVVLRLLVSRLGGADSHCLRALLLS
CEECCCCCCCCCCHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHHCCCHHHHHHHHHHH
EAQAQRLGDVIAALPQDVPVYVAGQKVMDQVVGFPIHRGILALGVARPLPEPAALLERLG
HHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHC
ERALVVAALGLTNHDNMGGIFRNAAAFGADAVLIDAACCDPLYRKAIRVSVGASLVVPFA
CCEEEEEEECCCCCCCCCHHHHHHHHCCCCCEEEEHHHCCHHHHHHHHHHCCCHHHHHHH
RVADGAAAVELLKARGFEVVALSPAGREPLSRLVRPPRVAALFGTEGPGLPDAVMAMTRT
HHHCHHHHHHHHHHCCCEEEEECCCCHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHH
VAIPMAAGFDSLNVATTSGIVLHHLSGV
HHHHHHCCCCCCCHHHHCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]