| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is smeIM [H]
Identifier: 154245121
GI number: 154245121
Start: 1349195
End: 1350364
Strand: Reverse
Name: smeIM [H]
Synonym: Xaut_1173
Alternate gene names: 154245121
Gene position: 1350364-1349195 (Counterclockwise)
Preceding gene: 154245124
Following gene: 154245119
Centisome position: 25.44
GC content: 70.51
Gene sequence:
>1170_bases GTGCCCGCGGCGGCACCCCGTGCCGCGCGCGCCATGTCTTCGGCGAAGCGGATGCGGGAGGCGGCCGGCGCCGCGCCGGG CGACCTGCCCCTCGACCAGATCCTCCTCGGCGACAGCATCCAGATGATGGCCGGCCTGCCCGCCGGCAGCGTGGACCTCG TGTTCGCCGATCCGCCCTACAATCTCCAGCTCGGCGGTGAGCTGAAGCGGCCCGACGAGAGCCTCGTCGATGCCGTGGAC GACGACTGGGACCGCTTCGACAGCTTCGCCACCTATGATGCCTTCACCCGCGCCTGGCTTCTGGCCGCGCGGCGGGCGCT GAAGCCCAACGGCACGCTGTTCGTCATCGGTTCCTATCACAACATCTTCCGCGTCGGCGCCATGATGCAGGATCTGGGCT TCTGGATCCTCAACGACATCGTGTGGCGCAAGGCCAACCCCATGCCCAACTTCCGGGGCAGGCGCTTCACCAATGCCCAC GAGACCCTGATCTGGGCCGCCCGCAGCGCGGATGCCAAATACACCTTCAATTACGAGGCGCTGAAAGCCGGCAACGAAGA CGTGCAGGTGCGCTCGGACTGGCTGTTTCCCCTCTGCACCGGCCAGGAGCGGCTGAAGGACGGGGCGGGAAAGAAGCTGC ACCCCACCCAGAAGCCCGAGGCCCTGCTCGCCCGCGTCCTGCTCTCGGCGACGAAGCCCGGCGACGTGGTGCTCGACCCC TTCTTCGGCTCCGGCACCACCGGCGCTGTGGCGAAGCGCCTGCGCCGCTCCTTCATCGGCATCGAGCGGGAGGAGGCCTA TGCGCAGGCCGCGCGCGCCCGCATCGACGCGGTGGAGCCGCTGCCGGAAGATGCCCTCGTGGCCCCGCCCAGCGCGCGGG AAGCCCCGCGCGTCGCCTTCTCGGTGCTGGTGGAGCGCGGGCTGGTGACGCCCGGCGCCGAGCTGACCGACGCCAAGGGC CGCTTCCGCGCCGTGGTGCGGGCCGATGGCACATTGGCACTGGCCGGCGGGCAGAATGTGGGCTCCATCCACCGCGTCGG CGCGCTGGCGCAGGGGGCGGAAGCCTGCAACGGCTGGACCTTCTGGCACGTGGAAGAACAGGGCCGCCGCCATCCCATCG ACACCCTGCGCGCTCGCCTCAGGGCCGAGATGGGCATCGCGGCGGAATAG
Upstream 100 bases:
>100_bases GGCGCGCCAGTTGGGCGTTTGTCCGGAGTATGCCGAGCCTGCCCCCTTGGCGGCCCCGCGGGCCGCGAACGCGGTCGCTT CGGCCCCGCGGGCCGTCGAT
Downstream 100 bases:
>100_bases GCCAGCCGGGACGCTCCACTTACGCACGCCGGTCACGCCCGCCTATCCCGGCCGCAGCATCCCCTCTTCAAAGCCCGGCC ACGGATGCCTGATGGACCTC
Product: DNA methylase N-4/N-6 domain-containing protein
Products: NA
Alternate protein names: M.SmeI; Adenine-specific methyltransferase SmeIP; M.CcrMI ortholog; Modification methylase SmeIP; M.SmeIP [H]
Number of amino acids: Translated: 389; Mature: 388
Protein sequence:
>389_residues MPAAAPRAARAMSSAKRMREAAGAAPGDLPLDQILLGDSIQMMAGLPAGSVDLVFADPPYNLQLGGELKRPDESLVDAVD DDWDRFDSFATYDAFTRAWLLAARRALKPNGTLFVIGSYHNIFRVGAMMQDLGFWILNDIVWRKANPMPNFRGRRFTNAH ETLIWAARSADAKYTFNYEALKAGNEDVQVRSDWLFPLCTGQERLKDGAGKKLHPTQKPEALLARVLLSATKPGDVVLDP FFGSGTTGAVAKRLRRSFIGIEREEAYAQAARARIDAVEPLPEDALVAPPSAREAPRVAFSVLVERGLVTPGAELTDAKG RFRAVVRADGTLALAGGQNVGSIHRVGALAQGAEACNGWTFWHVEEQGRRHPIDTLRARLRAEMGIAAE
Sequences:
>Translated_389_residues MPAAAPRAARAMSSAKRMREAAGAAPGDLPLDQILLGDSIQMMAGLPAGSVDLVFADPPYNLQLGGELKRPDESLVDAVD DDWDRFDSFATYDAFTRAWLLAARRALKPNGTLFVIGSYHNIFRVGAMMQDLGFWILNDIVWRKANPMPNFRGRRFTNAH ETLIWAARSADAKYTFNYEALKAGNEDVQVRSDWLFPLCTGQERLKDGAGKKLHPTQKPEALLARVLLSATKPGDVVLDP FFGSGTTGAVAKRLRRSFIGIEREEAYAQAARARIDAVEPLPEDALVAPPSAREAPRVAFSVLVERGLVTPGAELTDAKG RFRAVVRADGTLALAGGQNVGSIHRVGALAQGAEACNGWTFWHVEEQGRRHPIDTLRARLRAEMGIAAE >Mature_388_residues PAAAPRAARAMSSAKRMREAAGAAPGDLPLDQILLGDSIQMMAGLPAGSVDLVFADPPYNLQLGGELKRPDESLVDAVDD DWDRFDSFATYDAFTRAWLLAARRALKPNGTLFVIGSYHNIFRVGAMMQDLGFWILNDIVWRKANPMPNFRGRRFTNAHE TLIWAARSADAKYTFNYEALKAGNEDVQVRSDWLFPLCTGQERLKDGAGKKLHPTQKPEALLARVLLSATKPGDVVLDPF FGSGTTGAVAKRLRRSFIGIEREEAYAQAARARIDAVEPLPEDALVAPPSAREAPRVAFSVLVERGLVTPGAELTDAKGR FRAVVRADGTLALAGGQNVGSIHRVGALAQGAEACNGWTFWHVEEQGRRHPIDTLRARLRAEMGIAAE
Specific function: This methylase recognizes the double-stranded sequence GANTC and causes specific methylation on A-2 on both strands. Ccrm-mediated methylation has important cellular functions. Appears to contribute to the accurate cell-cycle control of DNA replication an
COG id: COG0863
COG function: function code L; DNA modification methylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI87082238, Length=264, Percent_Identity=32.5757575757576, Blast_Score=110, Evalue=2e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002941 - InterPro: IPR002052 - InterPro: IPR001091 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 42383; Mature: 42252
Theoretical pI: Translated: 8.66; Mature: 8.66
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAAAPRAARAMSSAKRMREAAGAAPGDLPLDQILLGDSIQMMAGLPAGSVDLVFADPPY CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHCCCCCCEEEEECCCCC NLQLGGELKRPDESLVDAVDDDWDRFDSFATYDAFTRAWLLAARRALKPNGTLFVIGSYH CEEECCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCH NIFRVGAMMQDLGFWILNDIVWRKANPMPNFRGRRFTNAHETLIWAARSADAKYTFNYEA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHEEEEEECCCCCEEEECHHH LKAGNEDVQVRSDWLFPLCTGQERLKDGAGKKLHPTQKPEALLARVLLSATKPGDVVLDP HHCCCCCEEEECCCCCEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEC FFGSGTTGAVAKRLRRSFIGIEREEAYAQAARARIDAVEPLPEDALVAPPSAREAPRVAF CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCHHHHHH SVLVERGLVTPGAELTDAKGRFRAVVRADGTLALAGGQNVGSIHRVGALAQGAEACNGWT HHHHHHCCCCCCCCCCCCCCCEEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHCCCCE FWHVEEQGRRHPIDTLRARLRAEMGIAAE EEEECCCCCCCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure PAAAPRAARAMSSAKRMREAAGAAPGDLPLDQILLGDSIQMMAGLPAGSVDLVFADPPY CCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHCCCCCCEEEEECCCCC NLQLGGELKRPDESLVDAVDDDWDRFDSFATYDAFTRAWLLAARRALKPNGTLFVIGSYH CEEECCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCH NIFRVGAMMQDLGFWILNDIVWRKANPMPNFRGRRFTNAHETLIWAARSADAKYTFNYEA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCHHEEEEEECCCCCEEEECHHH LKAGNEDVQVRSDWLFPLCTGQERLKDGAGKKLHPTQKPEALLARVLLSATKPGDVVLDP HHCCCCCEEEECCCCCEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEC FFGSGTTGAVAKRLRRSFIGIEREEAYAQAARARIDAVEPLPEDALVAPPSAREAPRVAF CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCHHHHHH SVLVERGLVTPGAELTDAKGRFRAVVRADGTLALAGGQNVGSIHRVGALAQGAEACNGWT HHHHHHCCCCCCCCCCCCCCCEEEEEEECCEEEEECCCCCCHHHHHHHHHHHHHHCCCCE FWHVEEQGRRHPIDTLRARLRAEMGIAAE EEEECCCCCCCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9294447; 11481430 [H]