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The map label for this gene is nrtC [H]

Identifier: 154245033

GI number: 154245033

Start: 1247132

End: 1248535

Strand: Reverse

Name: nrtC [H]

Synonym: Xaut_1084

Alternate gene names: 154245033

Gene position: 1248535-1247132 (Counterclockwise)

Preceding gene: 154245034

Following gene: 154245032

Centisome position: 23.52

GC content: 57.83

Gene sequence:

>1404_bases
ATGAAGATCGATTCCGTGTGCATTTCTGTCAGCCGCCGCGTGATGCTTGCCGCTTTGGCGGCCCTTGCGACAATGCCTTT
TGCCATCTCGCTGGCTGGCGCAGCACCGCTCAAGCTTGAAAAAGACGAGTTGAAGCTTGGCTTCATCAAATTGACCGACA
TGGCCCCCCTCGCCATCGCGAAGGAAAAGGGGTTCTTCGAAGATGAGGGGCTCTATGTAACCCTGGAGCCGCAAGCAAAC
TGGAAGGTTCTGCTTGATCGTGTCATCGACGGCGAACTCGATGGCGCGCAGATGCTCGCTGGCCAACCGCTCGCGGCGAC
GATCGGCTTTGGCACCAAGGCGGAACTGGTGACTCCCTTCTCCATGGACCTGAACGGCAACGGCATCACCGTTTCCAACG
AGGTCTGGGAGATGATGAAGCCCTATGTCGAGATGAAGGACGGGAAGCCGGTCCATCCGATCAAGGCCGATGCCCTGAAG
AAGGTCATTGAAAAATTCAAGGCGAGCGGAAAGCCATTCAACATGGGGATGGTGTTTCCCGTTTCGACCCATAATTACGA
GCTGCGCTACTGGCTGGCGGCCGGCAACATCAATCCCGGATTCTATTCGAAAAATGATCTGTCCGGCCAGATCAAGGCTG
ACGCGTTGCTGTCGGTGACGCCGCCGCCTCAGATGCCCTCGACGCTCGAGGCCGGAACCATCAATGGCTACAGCGTTGGC
GAGCCCTGGAACCAGGCCGCGGTGGCCAAGGGCGTGGGCGTGCCGGTCATCACCGATTACGAAATCTGGAAGAACAATCC
GGAGAAGGTCTTCGGCCTGACCAAGGCGTTTACTGAAAAGTATCCGAACACGACCATTGCCCTCACCAAGGCTCTGATCC
GCGCCGGCGAATGGCTGGACGCGAACAACAATGCCAACCGCAAGGAAGCGGTGAAGATTCTGTCGAAGTCTGAATATGTC
GGCGCGGACGCGGCCGTCATTGCCAATTCGATGACCGGAACCTTTGAATATGAGAAGGGTGACAAGCGGGAGGTCCCGGA
CTTCAACGTCTTCTTCCGCTACAATGCCACCTATCCCTTCTATTCCGACGCCGTCTGGTACCTCACTCAGATGCGTCGCT
GGGGCCAGATCCCCGAAACGAAGGACGATGCCTGGTACGCGGATGTCGCAACCAAGGTCTATCGCCCGGACCTCTACCTG
AAGGCGGCGAAACTCCTGGTTGAGGAAGGCAAGGCGAAGCAGGCCGACTTCCCCTGGGATTCCGATGGCTACCGGGCGCC
GACGTCCGACTTCATCGACGGCGTCAGCTACGACGGCCGCAAGCCGAACAGCTACATCGATTCTCTCCCCATCGGCCTGA
AGTCGAAGCAGGTCATGGAAGGAAGTGAGATCGTCAATCGTTGA

Upstream 100 bases:

>100_bases
TCGCTCCGAGGTTTCGGAGGCGACAGCTGGTTGTCGGCCACACTCCCCATCAGAATCAACAGCACGGGCTGCCTTGCAGT
CCGGGCGGTCGGAGATATCG

Downstream 100 bases:

>100_bases
TCGCTCCTCACGGGGCCGGCGCGCGACGCCGCTGGCCCCGACCGGACCTACAGCCAGATCAGGACGCATCATGTCGAATG
CTGCCCAAAATACTGCATCT

Product: nitrate/sulfonate/bicarbonate ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MKIDSVCISVSRRVMLAALAALATMPFAISLAGAAPLKLEKDELKLGFIKLTDMAPLAIAKEKGFFEDEGLYVTLEPQAN
WKVLLDRVIDGELDGAQMLAGQPLAATIGFGTKAELVTPFSMDLNGNGITVSNEVWEMMKPYVEMKDGKPVHPIKADALK
KVIEKFKASGKPFNMGMVFPVSTHNYELRYWLAAGNINPGFYSKNDLSGQIKADALLSVTPPPQMPSTLEAGTINGYSVG
EPWNQAAVAKGVGVPVITDYEIWKNNPEKVFGLTKAFTEKYPNTTIALTKALIRAGEWLDANNNANRKEAVKILSKSEYV
GADAAVIANSMTGTFEYEKGDKREVPDFNVFFRYNATYPFYSDAVWYLTQMRRWGQIPETKDDAWYADVATKVYRPDLYL
KAAKLLVEEGKAKQADFPWDSDGYRAPTSDFIDGVSYDGRKPNSYIDSLPIGLKSKQVMEGSEIVNR

Sequences:

>Translated_467_residues
MKIDSVCISVSRRVMLAALAALATMPFAISLAGAAPLKLEKDELKLGFIKLTDMAPLAIAKEKGFFEDEGLYVTLEPQAN
WKVLLDRVIDGELDGAQMLAGQPLAATIGFGTKAELVTPFSMDLNGNGITVSNEVWEMMKPYVEMKDGKPVHPIKADALK
KVIEKFKASGKPFNMGMVFPVSTHNYELRYWLAAGNINPGFYSKNDLSGQIKADALLSVTPPPQMPSTLEAGTINGYSVG
EPWNQAAVAKGVGVPVITDYEIWKNNPEKVFGLTKAFTEKYPNTTIALTKALIRAGEWLDANNNANRKEAVKILSKSEYV
GADAAVIANSMTGTFEYEKGDKREVPDFNVFFRYNATYPFYSDAVWYLTQMRRWGQIPETKDDAWYADVATKVYRPDLYL
KAAKLLVEEGKAKQADFPWDSDGYRAPTSDFIDGVSYDGRKPNSYIDSLPIGLKSKQVMEGSEIVNR
>Mature_467_residues
MKIDSVCISVSRRVMLAALAALATMPFAISLAGAAPLKLEKDELKLGFIKLTDMAPLAIAKEKGFFEDEGLYVTLEPQAN
WKVLLDRVIDGELDGAQMLAGQPLAATIGFGTKAELVTPFSMDLNGNGITVSNEVWEMMKPYVEMKDGKPVHPIKADALK
KVIEKFKASGKPFNMGMVFPVSTHNYELRYWLAAGNINPGFYSKNDLSGQIKADALLSVTPPPQMPSTLEAGTINGYSVG
EPWNQAAVAKGVGVPVITDYEIWKNNPEKVFGLTKAFTEKYPNTTIALTKALIRAGEWLDANNNANRKEAVKILSKSEYV
GADAAVIANSMTGTFEYEKGDKREVPDFNVFFRYNATYPFYSDAVWYLTQMRRWGQIPETKDDAWYADVATKVYRPDLYL
KAAKLLVEEGKAKQADFPWDSDGYRAPTSDFIDGVSYDGRKPNSYIDSLPIGLKSKQVMEGSEIVNR

Specific function: Probably part of a high-affinity binding-protein- dependent transport system for nitrate. Probably responsible for energy coupling to the transport system [H]

COG id: COG0715

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR015168
- InterPro:   IPR005890 [H]

Pfam domain/function: PF00005 ABC_tran; PF09084 NMT1 [H]

EC number: NA

Molecular weight: Translated: 51604; Mature: 51604

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIDSVCISVSRRVMLAALAALATMPFAISLAGAAPLKLEKDELKLGFIKLTDMAPLAIA
CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEEECCCEEEEEEEECCCCCEEEE
KEKGFFEDEGLYVTLEPQANWKVLLDRVIDGELDGAQMLAGQPLAATIGFGTKAELVTPF
CCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCCEEEEEE
SMDLNGNGITVSNEVWEMMKPYVEMKDGKPVHPIKADALKKVIEKFKASGKPFNMGMVFP
EEEECCCCEEECHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEE
VSTHNYELRYWLAAGNINPGFYSKNDLSGQIKADALLSVTPPPQMPSTLEAGTINGYSVG
EECCCEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEECCCCCCCCCCCCCCCCCCCCC
EPWNQAAVAKGVGVPVITDYEIWKNNPEKVFGLTKAFTEKYPNTTIALTKALIRAGEWLD
CCCCHHHHHCCCCCCEEECHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
ANNNANRKEAVKILSKSEYVGADAAVIANSMTGTFEYEKGDKREVPDFNVFFRYNATYPF
CCCCCCHHHHHHHHHCCCCCCCCHHHEECCCCCEEEECCCCCCCCCCEEEEEEECCCCCC
YSDAVWYLTQMRRWGQIPETKDDAWYADVATKVYRPDLYLKAAKLLVEEGKAKQADFPWD
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCC
SDGYRAPTSDFIDGVSYDGRKPNSYIDSLPIGLKSKQVMEGSEIVNR
CCCCCCCHHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHCCHHHHCC
>Mature Secondary Structure
MKIDSVCISVSRRVMLAALAALATMPFAISLAGAAPLKLEKDELKLGFIKLTDMAPLAIA
CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCEEECCCEEEEEEEECCCCCEEEE
KEKGFFEDEGLYVTLEPQANWKVLLDRVIDGELDGAQMLAGQPLAATIGFGTKAELVTPF
CCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCHHHHCCCCCEEEECCCCCCEEEEEE
SMDLNGNGITVSNEVWEMMKPYVEMKDGKPVHPIKADALKKVIEKFKASGKPFNMGMVFP
EEEECCCCEEECHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEE
VSTHNYELRYWLAAGNINPGFYSKNDLSGQIKADALLSVTPPPQMPSTLEAGTINGYSVG
EECCCEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEECCCCCCCCCCCCCCCCCCCCC
EPWNQAAVAKGVGVPVITDYEIWKNNPEKVFGLTKAFTEKYPNTTIALTKALIRAGEWLD
CCCCHHHHHCCCCCCEEECHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
ANNNANRKEAVKILSKSEYVGADAAVIANSMTGTFEYEKGDKREVPDFNVFFRYNATYPF
CCCCCCHHHHHHHHHCCCCCCCCHHHEECCCCCEEEECCCCCCCCCCEEEEEEECCCCCC
YSDAVWYLTQMRRWGQIPETKDDAWYADVATKVYRPDLYLKAAKLLVEEGKAKQADFPWD
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCC
SDGYRAPTSDFIDGVSYDGRKPNSYIDSLPIGLKSKQVMEGSEIVNR
CCCCCCCHHHHHCCCCCCCCCCCCHHHCCCCCCCCHHHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]