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The map label for this gene is qseB [H]

Identifier: 154245024

GI number: 154245024

Start: 1234238

End: 1234900

Strand: Direct

Name: qseB [H]

Synonym: Xaut_1075

Alternate gene names: 154245024

Gene position: 1234238-1234900 (Clockwise)

Preceding gene: 154245020

Following gene: 154245025

Centisome position: 23.25

GC content: 72.55

Gene sequence:

>663_bases
ATGCGCATACTGGTCGTCGAGGACGATCCGGTCCTGATGGACGGGCTCAAGGTGGGGCTCGGCCTCGCGGGAGCAACGGT
GGATGAGGCGACGACCTGCGCCGATGCGCGGGCGGCGCTCGCGGCCGGCCGGTTCGATGCGGTGGTGCTCGACGTGATGC
TCCCGGATGGCTCCGGCCTCGACGTGCTCGCCGGCCTGCGCGCGCGGGGCAACGCAACGCCCGTCCTCCTGCTCACCGCC
CTCGACGAGGCGCCGGACCGGGTGCGGGGCCTCGACGGCGGCGCTGACGACTATCTGGGCAAGCCCTTCGACCTCGACGA
ACTGAACGCCCGCGTGCGCGCCATCGCCCGCCGCGGCCATGGCCGGGCCGGCCCGCTGCTCAAGGCGGGCGCGCTGGTGC
TCGATCCCGCCACCCTCGCTGCGACGCTGGATGGGCTGCCCATCGCCCTGTCGCGTCGGGAGTTCGCGGTGCTCTCCGCG
CTCATGGAGCGGCCGGGCGTGATCCGCTCCCGGATGGAGATCGAGGAGCGGCTCTACGGCTGGCAGGAGGAGGTGGAGAG
CAACGCGGTGGAGGTGCACATCCACAATCTTCGGGCCAAGGTCGGCCGCGAGACCATCGAGACCGTGCGCGGCCTCGGCT
ATCGCGTCAGGGGGCCGGCATGA

Upstream 100 bases:

>100_bases
GAGAGCGAGGCGGGTTCGCGACCATGACGCTCCCTCGGATGTCCACCTTAAGCGGGCCTTAAGGTCGGGATAGAAGGGAA
GGGGCGAGGAGAGCGGTCTG

Downstream 100 bases:

>100_bases
GCTCGCTCAAGCGCAGGCTGGTGCTGATCCTGCTGGCGGCCACGGGGGTCATCTGGCTGTGCGCCACCGGCTGGATCTAC
GCCTCCAGCCGCAGCGAGCT

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MRILVVEDDPVLMDGLKVGLGLAGATVDEATTCADARAALAAGRFDAVVLDVMLPDGSGLDVLAGLRARGNATPVLLLTA
LDEAPDRVRGLDGGADDYLGKPFDLDELNARVRAIARRGHGRAGPLLKAGALVLDPATLAATLDGLPIALSRREFAVLSA
LMERPGVIRSRMEIEERLYGWQEEVESNAVEVHIHNLRAKVGRETIETVRGLGYRVRGPA

Sequences:

>Translated_220_residues
MRILVVEDDPVLMDGLKVGLGLAGATVDEATTCADARAALAAGRFDAVVLDVMLPDGSGLDVLAGLRARGNATPVLLLTA
LDEAPDRVRGLDGGADDYLGKPFDLDELNARVRAIARRGHGRAGPLLKAGALVLDPATLAATLDGLPIALSRREFAVLSA
LMERPGVIRSRMEIEERLYGWQEEVESNAVEVHIHNLRAKVGRETIETVRGLGYRVRGPA
>Mature_220_residues
MRILVVEDDPVLMDGLKVGLGLAGATVDEATTCADARAALAAGRFDAVVLDVMLPDGSGLDVLAGLRARGNATPVLLLTA
LDEAPDRVRGLDGGADDYLGKPFDLDELNARVRAIARRGHGRAGPLLKAGALVLDPATLAATLDGLPIALSRREFAVLSA
LMERPGVIRSRMEIEERLYGWQEEVESNAVEVHIHNLRAKVGRETIETVRGLGYRVRGPA

Specific function: Member of a two-component regulatory system qseB/qseC. Activates the flagella regulon by activating transcription of flhDC [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=214, Percent_Identity=49.5327102803738, Blast_Score=196, Evalue=1e-51,
Organism=Escherichia coli, GI1790552, Length=214, Percent_Identity=44.392523364486, Blast_Score=172, Evalue=1e-44,
Organism=Escherichia coli, GI87082012, Length=218, Percent_Identity=38.5321100917431, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1786784, Length=224, Percent_Identity=35.7142857142857, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1787375, Length=218, Percent_Identity=33.9449541284404, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1786599, Length=222, Percent_Identity=35.5855855855856, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1790860, Length=181, Percent_Identity=39.2265193370166, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI2367329, Length=226, Percent_Identity=37.1681415929204, Blast_Score=113, Evalue=8e-27,
Organism=Escherichia coli, GI1789809, Length=225, Percent_Identity=33.7777777777778, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1786911, Length=228, Percent_Identity=32.8947368421053, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1790863, Length=231, Percent_Identity=31.6017316017316, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1788394, Length=229, Percent_Identity=33.1877729257642, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787229, Length=221, Percent_Identity=32.579185520362, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1788550, Length=161, Percent_Identity=32.9192546583851, Blast_Score=71, Evalue=6e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 23388; Mature: 23388

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILVVEDDPVLMDGLKVGLGLAGATVDEATTCADARAALAAGRFDAVVLDVMLPDGSGL
CEEEEECCCCEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCH
DVLAGLRARGNATPVLLLTALDEAPDRVRGLDGGADDYLGKPFDLDELNARVRAIARRGH
HHHHCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCHHCCCCCCCHHHHHHHHHHHHHHCC
GRAGPLLKAGALVLDPATLAATLDGLPIALSRREFAVLSALMERPGVIRSRMEIEERLYG
CCCCCHHHCCEEEECCHHHHHHHCCCCEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
WQEEVESNAVEVHIHNLRAKVGRETIETVRGLGYRVRGPA
HHHHHCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEECCCC
>Mature Secondary Structure
MRILVVEDDPVLMDGLKVGLGLAGATVDEATTCADARAALAAGRFDAVVLDVMLPDGSGL
CEEEEECCCCEEEHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCH
DVLAGLRARGNATPVLLLTALDEAPDRVRGLDGGADDYLGKPFDLDELNARVRAIARRGH
HHHHCCCCCCCCCCEEEEEECCCCHHHHHCCCCCCHHCCCCCCCHHHHHHHHHHHHHHCC
GRAGPLLKAGALVLDPATLAATLDGLPIALSRREFAVLSALMERPGVIRSRMEIEERLYG
CCCCCHHHCCEEEECCHHHHHHHCCCCEEECHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
WQEEVESNAVEVHIHNLRAKVGRETIETVRGLGYRVRGPA
HHHHHCCCEEEEEEEHHHHHHHHHHHHHHHCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]