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The map label for this gene is ygbK [C]

Identifier: 154244975

GI number: 154244975

Start: 1177546

End: 1178826

Strand: Reverse

Name: ygbK [C]

Synonym: Xaut_1025

Alternate gene names: 154244975

Gene position: 1178826-1177546 (Counterclockwise)

Preceding gene: 154244976

Following gene: 154244974

Centisome position: 22.2

GC content: 71.9

Gene sequence:

>1281_bases
ATGACCCTCGCCCTCGGCACCATCGCCGACGACTATACCGGCGCCTCCGACCTCGCCAACACCTTGGCCAAGAACGGCCT
GCGCACCGTGCAGACCGTGGGCATCCCGGCCGACGACCTGCCGCTGGGCGAGGTGGACGCGGTGGTGGTCTCCCTGAAGA
TCCGCTCCGTGCCCGCCGCCGAGGCGGTGGAGAAGGCCCGCGCCGCCGACCGCTGGCTCAGGGCGCGCGGCGCCGGCCAT
GTCATGTACAAGATCTGCTCCACCTTCGATTCCACCGACGAGGGCAATATCGGCCCGGTGCTCGACGCCCTCTCGGCGGA
TGCCGGCGCGGCGGCGGTGCTGGTCACCCCCGCGTTTCCGGAGACCGGGCGCACCGTCTACCAGGGCCATCTCTTCGTCG
GCTCGGTGCCGCTGAACGAGAGCCCGCTCAAGGACCATCCCCTCAATCCCATGCATGACGCGAACCTCGTGCGCGTGCTG
GGGCGGCAGAGCGTCTCCCGCGTGGGGCTGGTTCCACAGGCGCTGGTGGCGCGCGGCGCGGATGCCGTCCGCGCCCGGCT
GGCGGAGCTTGCGGTCGACGGCATCGGCGGCGTGATCGCCGACGCGGTGAATGAGGGCGATCTGGTCACCCTCGGCGCCG
CAGCACTCGATTCCCAGGTTTCCGTGGGCGCCTCCGGCCTCGGCCTCGGCCTGGCCCGGGGCCTCGTCGCCACCGGCCGG
GTGCTGCGGGTCGATGCGACGGCATCGGTCATGGCCGGTGTCGGCGGGCTTTCCGCCTGCCTTGCCGGTAGCTGCTCCAA
GGCCACGCTGGAACAGATCGCGCGGGCCGAGGATGTCATGCCAGTGCTGCGCCTGTCCGCCGAGGCGCTGGTCTCCGGCC
CTGCCGAGGCCGAGGGGGCACTGGAGTGGGCAGCCGCCCGCATCGGCGACGGTCCCGTCCTCATCGCCTCCTCTGCCTCG
CCGGCCGAGGTGGCACGGCTTCAGGCCCTCCACGGCCGCGAGGCTGCCGGCCATGCCATCGAGCAGGGGCTGGCGACCAT
TGCCGAAGGGCTGGTCAAGCGCGGCGTCCGTCGGCTGGTGGTGGCGGGGGGCGAGACCTCCGGCGCGGTGGTGGATCGCC
TGGGCATCCCAGCCTTCGCGCTGGGACCGGAGATCGCCGCCGGCGTGCCGGTGCTGCGCACCATCGGCGGCGCCCACGGT
GATCTTCTCATGGCGCTCAAGTCCGGCAATTTCGGCGGCGTGAACTTTTTCACCGATGCGCTGGGGCTGATGTCGAAGTA
G

Upstream 100 bases:

>100_bases
TCGTGGGCTGCGAATACAACCCGCGCGCCGGCACGCTGAGCGGCCTGAGCTGGTTCGCGCCCTATGCCGCCGCCCCGGCC
CTCCAGGCGGGAGCGAACGG

Downstream 100 bases:

>100_bases
CGAGCCGCCTTCCAGACACCGAGCTTCGCTGAGCGGGCTCCGGCCGGGTCGAAATGGCCCCGTCGGAGCCCGTTCGCGTT
GCAGGGAAACGCCCAGGCCT

Product: Hrp-dependent type III effector protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 425

Protein sequence:

>426_residues
MTLALGTIADDYTGASDLANTLAKNGLRTVQTVGIPADDLPLGEVDAVVVSLKIRSVPAAEAVEKARAADRWLRARGAGH
VMYKICSTFDSTDEGNIGPVLDALSADAGAAAVLVTPAFPETGRTVYQGHLFVGSVPLNESPLKDHPLNPMHDANLVRVL
GRQSVSRVGLVPQALVARGADAVRARLAELAVDGIGGVIADAVNEGDLVTLGAAALDSQVSVGASGLGLGLARGLVATGR
VLRVDATASVMAGVGGLSACLAGSCSKATLEQIARAEDVMPVLRLSAEALVSGPAEAEGALEWAAARIGDGPVLIASSAS
PAEVARLQALHGREAAGHAIEQGLATIAEGLVKRGVRRLVVAGGETSGAVVDRLGIPAFALGPEIAAGVPVLRTIGGAHG
DLLMALKSGNFGGVNFFTDALGLMSK

Sequences:

>Translated_426_residues
MTLALGTIADDYTGASDLANTLAKNGLRTVQTVGIPADDLPLGEVDAVVVSLKIRSVPAAEAVEKARAADRWLRARGAGH
VMYKICSTFDSTDEGNIGPVLDALSADAGAAAVLVTPAFPETGRTVYQGHLFVGSVPLNESPLKDHPLNPMHDANLVRVL
GRQSVSRVGLVPQALVARGADAVRARLAELAVDGIGGVIADAVNEGDLVTLGAAALDSQVSVGASGLGLGLARGLVATGR
VLRVDATASVMAGVGGLSACLAGSCSKATLEQIARAEDVMPVLRLSAEALVSGPAEAEGALEWAAARIGDGPVLIASSAS
PAEVARLQALHGREAAGHAIEQGLATIAEGLVKRGVRRLVVAGGETSGAVVDRLGIPAFALGPEIAAGVPVLRTIGGAHG
DLLMALKSGNFGGVNFFTDALGLMSK
>Mature_425_residues
TLALGTIADDYTGASDLANTLAKNGLRTVQTVGIPADDLPLGEVDAVVVSLKIRSVPAAEAVEKARAADRWLRARGAGHV
MYKICSTFDSTDEGNIGPVLDALSADAGAAAVLVTPAFPETGRTVYQGHLFVGSVPLNESPLKDHPLNPMHDANLVRVLG
RQSVSRVGLVPQALVARGADAVRARLAELAVDGIGGVIADAVNEGDLVTLGAAALDSQVSVGASGLGLGLARGLVATGRV
LRVDATASVMAGVGGLSACLAGSCSKATLEQIARAEDVMPVLRLSAEALVSGPAEAEGALEWAAARIGDGPVLIASSASP
AEVARLQALHGREAAGHAIEQGLATIAEGLVKRGVRRLVVAGGETSGAVVDRLGIPAFALGPEIAAGVPVLRTIGGAHGD
LLMALKSGNFGGVNFFTDALGLMSK

Specific function: Unknown

COG id: COG3395

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygbK [H]

Homologues:

Organism=Escherichia coli, GI1789093, Length=389, Percent_Identity=39.8457583547558, Blast_Score=259, Evalue=3e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010737 [H]

Pfam domain/function: PF07005 DUF1537 [H]

EC number: NA

Molecular weight: Translated: 42896; Mature: 42764

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLALGTIADDYTGASDLANTLAKNGLRTVQTVGIPADDLPLGEVDAVVVSLKIRSVPAA
CEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCHH
EAVEKARAADRWLRARGAGHVMYKICSTFDSTDEGNIGPVLDALSADAGAAAVLVTPAFP
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCC
ETGRTVYQGHLFVGSVPLNESPLKDHPLNPMHDANLVRVLGRQSVSRVGLVPQALVARGA
CCCCEEEECEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCH
DAVRARLAELAVDGIGGVIADAVNEGDLVTLGAAALDSQVSVGASGLGLGLARGLVATGR
HHHHHHHHHHHHHHHCHHHHHHCCCCCEEEEEHHHHCCCHHCCCCHHHHHHHHHHHHCCC
VLRVDATASVMAGVGGLSACLAGSCSKATLEQIARAEDVMPVLRLSAEALVSGPAEAEGA
EEEECCHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LEWAAARIGDGPVLIASSASPAEVARLQALHGREAAGHAIEQGLATIAEGLVKRGVRRLV
HHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEE
VAGGETSGAVVDRLGIPAFALGPEIAAGVPVLRTIGGAHGDLLMALKSGNFGGVNFFTDA
EECCCCCCHHHHHCCCCHHHCCCHHHCCCHHHHHHCCCCCCEEEEEECCCCCCHHHHHHH
LGLMSK
HHHCCC
>Mature Secondary Structure 
TLALGTIADDYTGASDLANTLAKNGLRTVQTVGIPADDLPLGEVDAVVVSLKIRSVPAA
EEEECCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEEEECCCCHH
EAVEKARAADRWLRARGAGHVMYKICSTFDSTDEGNIGPVLDALSADAGAAAVLVTPAFP
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCC
ETGRTVYQGHLFVGSVPLNESPLKDHPLNPMHDANLVRVLGRQSVSRVGLVPQALVARGA
CCCCEEEECEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCH
DAVRARLAELAVDGIGGVIADAVNEGDLVTLGAAALDSQVSVGASGLGLGLARGLVATGR
HHHHHHHHHHHHHHHCHHHHHHCCCCCEEEEEHHHHCCCHHCCCCHHHHHHHHHHHHCCC
VLRVDATASVMAGVGGLSACLAGSCSKATLEQIARAEDVMPVLRLSAEALVSGPAEAEGA
EEEECCHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LEWAAARIGDGPVLIASSASPAEVARLQALHGREAAGHAIEQGLATIAEGLVKRGVRRLV
HHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEE
VAGGETSGAVVDRLGIPAFALGPEIAAGVPVLRTIGGAHGDLLMALKSGNFGGVNFFTDA
EECCCCCCHHHHHCCCCHHHCCCHHHCCCHHHHHHCCCCCCEEEEEECCCCCCHHHHHHH
LGLMSK
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]