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The map label for this gene is yhjC [H]

Identifier: 154244965

GI number: 154244965

Start: 1165351

End: 1166286

Strand: Reverse

Name: yhjC [H]

Synonym: Xaut_1015

Alternate gene names: 154244965

Gene position: 1166286-1165351 (Counterclockwise)

Preceding gene: 154244970

Following gene: 154244954

Centisome position: 21.97

GC content: 69.02

Gene sequence:

>936_bases
ATGATCCGGCATCATTATTCGAGACTGCGAACAATGGATCGTTTCGATGCCATGCGGGTCTTCACCCGGATTGTCGAACG
CAGGAGCTTCACCCAGGCGGCCGGGGATCTCGGCCTGCCGCGCTCCTCGGTCACCGACGCGGTGAAGGGACTGGAGGCGC
GGCTGGGGGTGCGGCTGCTGCAGCGGACCACGCGGCATGTCAGCCCGACCCTGGATGGCGAGGCCTATTACCAGCGCTGC
GTCAGCCTGCTCGCCGACCTCGAGGATGCCGAGGGCGCCTTCGTCGGAGCCAAGCCCTCGGGCCTCATCCGCATGGATGT
CCACGGCACCCAGGCGCGGCATTTCCTGCTGCCCGGCCTGCCGCGCTTCCTCGCCACCTATCCCGGCATCCGGCTGCACA
TGAGCGAGACCCACCAACAGCTGGACCTGATCCGCGAGGGCTTCGACTGCATCCTGCGCGCCGGCGAACTCGCCAACAGC
CCGTTGATCCGGCGGCGCCTGGCGACCCTTGAGCGCGGTACCTTCGCGAGCCCCGGTTATCTCCGGCGCTTCGGCACGCC
GCGCACGCCGGAGGAGCTTGAAGGGCACGAGATGGTCGGCCTACTGGCCACCGACACCGCCAAGATCTCGCCCTTGCTGT
TCACCGTAGCCGGAAAAGTGCGGCAGCTGACGTTGCCCGCCTCGCTCACGGTGACAGGGCCCGAGACCAACGTGGCCGCC
GCCTGCCTCGGCATCGGACTGATCCAGGTGCCGCGCTACCGCGTCGCCGCAGAGCTTGCGGGAGGCGCCCTGGTGGAGGT
CCTCGCGGACTTCCCGCCCGCCGCCCTGCCGGTCCATGTGCTGTATTCGCACACCCGCCAGCTCTCGCCGCGGCTGCGCG
TGCTCATCGACTGGATGGCCGCCCAGTTCAGGGAACGGGCCGGGCCGGCGCTCTGA

Upstream 100 bases:

>100_bases
GCTGGTGTGAGAGGTCATGGTCTTCGCTCCTGTGCCGACCGCCGGTGTGGCGGCGGGTTGGTGGAGACAATGCCCATTTC
CCCACGCCAGATAATCGCCC

Downstream 100 bases:

>100_bases
CGCTACCCGCGCAAGGGAGAACGCTCTCGATGGGCAGCAGCCGCCACGCCACCGGTCCCGGGACCCGCGCGGCGACGGCC
AGAATATGGTCCGGGCCAAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MIRHHYSRLRTMDRFDAMRVFTRIVERRSFTQAAGDLGLPRSSVTDAVKGLEARLGVRLLQRTTRHVSPTLDGEAYYQRC
VSLLADLEDAEGAFVGAKPSGLIRMDVHGTQARHFLLPGLPRFLATYPGIRLHMSETHQQLDLIREGFDCILRAGELANS
PLIRRRLATLERGTFASPGYLRRFGTPRTPEELEGHEMVGLLATDTAKISPLLFTVAGKVRQLTLPASLTVTGPETNVAA
ACLGIGLIQVPRYRVAAELAGGALVEVLADFPPAALPVHVLYSHTRQLSPRLRVLIDWMAAQFRERAGPAL

Sequences:

>Translated_311_residues
MIRHHYSRLRTMDRFDAMRVFTRIVERRSFTQAAGDLGLPRSSVTDAVKGLEARLGVRLLQRTTRHVSPTLDGEAYYQRC
VSLLADLEDAEGAFVGAKPSGLIRMDVHGTQARHFLLPGLPRFLATYPGIRLHMSETHQQLDLIREGFDCILRAGELANS
PLIRRRLATLERGTFASPGYLRRFGTPRTPEELEGHEMVGLLATDTAKISPLLFTVAGKVRQLTLPASLTVTGPETNVAA
ACLGIGLIQVPRYRVAAELAGGALVEVLADFPPAALPVHVLYSHTRQLSPRLRVLIDWMAAQFRERAGPAL
>Mature_311_residues
MIRHHYSRLRTMDRFDAMRVFTRIVERRSFTQAAGDLGLPRSSVTDAVKGLEARLGVRLLQRTTRHVSPTLDGEAYYQRC
VSLLADLEDAEGAFVGAKPSGLIRMDVHGTQARHFLLPGLPRFLATYPGIRLHMSETHQQLDLIREGFDCILRAGELANS
PLIRRRLATLERGTFASPGYLRRFGTPRTPEELEGHEMVGLLATDTAKISPLLFTVAGKVRQLTLPASLTVTGPETNVAA
ACLGIGLIQVPRYRVAAELAGGALVEVLADFPPAALPVHVLYSHTRQLSPRLRVLIDWMAAQFRERAGPAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=37.248322147651, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1786401, Length=300, Percent_Identity=33.3333333333333, Blast_Score=154, Evalue=8e-39,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=29.7297297297297, Blast_Score=128, Evalue=4e-31,
Organism=Escherichia coli, GI1787589, Length=280, Percent_Identity=28.2142857142857, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787128, Length=283, Percent_Identity=25.4416961130742, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=24.7457627118644, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87081978, Length=305, Percent_Identity=27.8688524590164, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789173, Length=185, Percent_Identity=27.5675675675676, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786448, Length=255, Percent_Identity=27.4509803921569, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34329; Mature: 34329

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRHHYSRLRTMDRFDAMRVFTRIVERRSFTQAAGDLGLPRSSVTDAVKGLEARLGVRLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
QRTTRHVSPTLDGEAYYQRCVSLLADLEDAEGAFVGAKPSGLIRMDVHGTQARHFLLPGL
HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCEEEEECCCCCHHHHHCCCH
PRFLATYPGIRLHMSETHQQLDLIREGFDCILRAGELANSPLIRRRLATLERGTFASPGY
HHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHH
LRRFGTPRTPEELEGHEMVGLLATDTAKISPLLFTVAGKVRQLTLPASLTVTGPETNVAA
HHHCCCCCCHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCEEEECCCEEEEECCCCHHHH
ACLGIGLIQVPRYRVAAELAGGALVEVLADFPPAALPVHVLYSHTRQLSPRLRVLIDWMA
HHHHHHHHHCCHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
AQFRERAGPAL
HHHHHHCCCCC
>Mature Secondary Structure
MIRHHYSRLRTMDRFDAMRVFTRIVERRSFTQAAGDLGLPRSSVTDAVKGLEARLGVRLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
QRTTRHVSPTLDGEAYYQRCVSLLADLEDAEGAFVGAKPSGLIRMDVHGTQARHFLLPGL
HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCEEEEECCCCCHHHHHCCCH
PRFLATYPGIRLHMSETHQQLDLIREGFDCILRAGELANSPLIRRRLATLERGTFASPGY
HHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHH
LRRFGTPRTPEELEGHEMVGLLATDTAKISPLLFTVAGKVRQLTLPASLTVTGPETNVAA
HHHCCCCCCHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCEEEECCCEEEEECCCCHHHH
ACLGIGLIQVPRYRVAAELAGGALVEVLADFPPAALPVHVLYSHTRQLSPRLRVLIDWMA
HHHHHHHHHCCHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHH
AQFRERAGPAL
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]